Soybean mGWAS DBExplore The Genetic Basis Of Soybean Metabolism Glycine max
Overview Annotation GWAS Evidence Associated genes

P53574

Metabolite ID
P53574
Deionized mass
655.3649 Da
Average m/z
656.3732
Average RT
30.0766
Adduct
[M+H]+
Association scope
Overlapping genes only
Associated genes
79
GWAS result file
Available
Open in Soybean Metabolome Repository

Candidate annotations

Search compound candidates by deionized mass and tolerance. Follow compound IDs for database records, or use name searches to explore chemistry and soybean literature. About candidate annotations

GWAS Evidence

Dataset: indexed GWAS records.

Settings

SNP counts, plot highlights, gene associations and downloads use P < 10⁻¹⁰. Changing the threshold updates this page together.

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Associated genes

79 genes linked to SNP records with P < 10⁻¹⁰ in the selected scope. Supporting SNP records are counted per feature–gene pair.

Gene ID Alias Description Arabidopsis ortholog Supporting SNP recordsGene interval (1-based)Minimum P
Glyma.16G114900 hypothetical protein NA 3Chr16:25456379–25485759 (+)5.948e-11
Glyma.10G081700 hypothetical protein NA 2Chr10:9752508–9758422 (+)1.404e-14
Glyma.13G135700 hypothetical protein NA 2Chr13:24812720–24818735 (+)2.105e-11
Glyma.13G135800 hypothetical protein AT5G02800:CDL1:Protein kinase superfamily protein 2Chr13:24820151–24823999 (-)2.105e-11
Glyma.16G031600 hypothetical protein NA 2Chr16:2964569–2985013 (+)5.055e-11
Glyma.16G180100 hypothetical protein NA 2Chr16:34070806–34076053 (+)4.166e-13
Glyma.17G215800 Aberrant root formation protein 4 AT5G11030:ALF4:aberrant root formation protein 2Chr17:36328551–36338097 (+)2.753e-11
Glyma.18G259000 hypothetical protein NA 2Chr18:54442402–54446789 (-)1.869e-11
Glyma.01G123900 hypothetical protein AT3G51770:ETO1:tetratricopeptide repeat (TPR)-containing protein 1Chr01:42831758–42837350 (+)8.847e-12
Glyma.01G124100 hypothetical protein NA 1Chr01:42886229–42892204 (-)2.128e-11
Glyma.01G169700 hypothetical protein AT4G36410:UBC17:ubiquitin-conjugating enzyme 17 1Chr01:50715084–50719427 (-)1.797e-12
Glyma.01G169800 hypothetical protein AT4G36400:D2HGDH:FAD-linked oxidases family protein 1Chr01:50726088–50733347 (-)1.797e-12
Glyma.02G205300 hypothetical protein NA 1Chr02:39037472–39038396 (-)1.042e-11
Glyma.03G023000 hypothetical protein AT4G00220:JLO:Lateral organ boundaries (LOB) domain family protein 1Chr03:2423540–2428634 (-)2.158e-12
Glyma.04G104400 hypothetical protein NA 1Chr04:9885009–9889282 (+)2.101e-11
Glyma.05G124700 hypothetical protein NA 1Chr05:31807311–31817648 (+)1.844e-11
Glyma.05G127500 hypothetical protein NA 1Chr05:32041345–32049554 (+)3.468e-11
Glyma.05G127800 hypothetical protein AT4G18240:SS4:starch synthase 4 1Chr05:32125404–32138244 (+)9.566e-11
Glyma.05G127900 SAD1 AT5G48870:SAD1:Small nuclear ribonucleoprotein family protein 1Chr05:32139620–32141770 (-)9.567e-11
Glyma.05G128200 hypothetical protein AT5G46330:FLS2:Leucine-rich receptor-like protein kinase family protein 1Chr05:32158034–32162343 (-)9.566e-11
Glyma.05G236400 hypothetical protein AT1G23210:GH9B6:glycosyl hydrolase 9B6__AT1G70710:GH9B1:glycosyl hydrolase 9B1 1Chr05:41274513–41279615 (-)3.92e-16
Glyma.05G236700 hypothetical protein AT4G33760:AT4G33760:tRNA synthetase class II (D, K and N) family protein 1Chr05:41301540–41310727 (+)1.449e-12
Glyma.06G019800 hypothetical protein NA 1Chr06:1494230–1501925 (+)6.51e-11
Glyma.07G068700 hypothetical protein AT2G46060:AT2G46060:transmembrane protein-like protein 1Chr07:6200187–6208590 (+)9.565e-11
Glyma.07G068800 hypothetical protein NA 1Chr07:6211775–6221107 (-)9.565e-11
Glyma.07G069400 hypothetical protein AT2G46020:BRM:transcription regulatory protein SNF2 1Chr07:6270176–6283087 (-)2.253e-11
Glyma.09G018700 hypothetical protein NA 1Chr09:1470411–1472672 (-)4.272e-11
Glyma.09G019300 hypothetical protein AT1G52520:FRS6:FAR1-related sequence 6 1Chr09:1514278–1517148 (+)7.689e-11
Glyma.09G052700 hypothetical protein AT1G31120:KUP10:K+ uptake permease 10 1Chr09:4617652–4626364 (+)6.314e-15
Glyma.09G082000 hypothetical protein NA 1Chr09:9638564–9650178 (+)1.467e-11
Glyma.10G078700 hypothetical protein NA 1Chr10:8882318–8903950 (+)3.523e-13
Glyma.10G079100 hypothetical protein NA 1Chr10:8960669–8962364 (-)3.523e-13
Glyma.10G079700 hypothetical protein AT2G35980:YLS9:Late embryosis abundant (LEA) hydroxyproline-rich glycoprotein family 1Chr10:9218478–9219468 (-)7.048e-11
Glyma.10G079800 hypothetical protein NA 1Chr10:9223520–9228511 (-)3.523e-13
Glyma.10G080000 hypothetical protein AT3G11660:NHL1:NDR1/HIN1-like 1__AT3G52470:AT3G52470:Late embryosis abundant (LEA) hydroxyproline-rich glycoprotein fam… 1Chr10:9258476–9260697 (-)3.523e-13
Glyma.10G081200 hypothetical protein NA 1Chr10:9600771–9603988 (-)2.059e-13
Glyma.10G082100 hypothetical protein AT3G05680:EMB2016:embryo defective 2016 1Chr10:9934486–9960586 (-)7.908e-11
Glyma.11G037100 hypothetical protein AT2G35660:CTF2A:FAD/NAD(P)-binding oxidoreductase family protein 1Chr11:2678678–2681764 (-)9.891e-13
Glyma.11G064300 hypothetical protein AT4G36780:BEH2:BES1/BZR1 homolog 2 1Chr11:4849799–4851673 (+)4.605e-12
Glyma.11G095100 hypothetical protein NA 1Chr11:7212438–7214276 (-)2.686e-14
Glyma.11G095600 hypothetical protein AT1G50460:HKL1:hexokinase-like 1 1Chr11:7249880–7254364 (-)3.053e-11
Glyma.12G114500 hypothetical protein AT4G22930:PYR4:pyrimidin 4 1Chr12:11396572–11400825 (-)1.29e-11
Glyma.12G114900 hypothetical protein NA 1Chr12:11457987–11462951 (-)1.29e-11
Glyma.12G202200 hypothetical protein AT2G20860:LIP1:lipoic acid synthase 1 1Chr12:36267599–36271584 (+)4.585e-11
Glyma.12G202300 hypothetical protein NA 1Chr12:36275438–36276838 (+)4.585e-11
Glyma.13G135300 hypothetical protein NA 1Chr13:24770681–24773826 (+)3.405e-11
Glyma.13G135400 hypothetical protein AT5G12130:PDE149:integral membrane TerC family protein 1Chr13:24786242–24791938 (+)3.405e-11
Glyma.13G135500 hypothetical protein AT5G02780:GSTL1:glutathione transferase lambda 1 1Chr13:24798567–24801567 (+)2.105e-11
Glyma.13G156000 hypothetical protein AT2G07560:HA6:H[+]-ATPase 6__AT3G42640:HA8:H[+]-ATPase 8 1Chr13:27104338–27109785 (+)7.359e-13
Glyma.14G066800 hypothetical protein NA 1Chr14:5511222–5513114 (+)3.443e-11
Glyma.14G069500 hypothetical protein AT5G37810:NIP4;1:NOD26-like intrinsic protein 4;1 1Chr14:5822246–5825628 (-)4.176e-13
Glyma.14G093100 hypothetical protein NA 1Chr14:8654730–8655892 (-)4.375e-11
Glyma.14G213400 hypothetical protein NA 1Chr14:47844823–47847028 (+)3.013e-11
Glyma.15G035600 hypothetical protein AT3G46740:TOC75-III:translocon at the outer envelope membrane of chloroplasts 75-III 1Chr15:2830678–2835534 (+)2.535e-11
Glyma.15G121100 hypothetical protein NA 1Chr15:9567797–9570248 (+)5.639e-13
Glyma.15G121300 hypothetical protein AT5G47760:PGLP2:2-phosphoglycolate phosphatase 2 1Chr15:9584685–9590201 (-)7.414e-13
Glyma.15G121500 hypothetical protein AT1G03370:AT1G03370:C2 calcium/lipid-binding and GRAM domain containing protein 1Chr15:9602794–9615281 (+)5.639e-13
Glyma.15G121800 hypothetical protein NA 1Chr15:9643746–9648073 (+)5.639e-13
Glyma.15G124000 hypothetical protein NA 1Chr15:9845097–9849312 (-)2.659e-11
Glyma.15G124500 MLO-like protein 13 AT4G24250:MLO13:Seven transmembrane MLO family protein 1Chr15:9888761–9894068 (-)8.474e-12
Glyma.16G003000 hypothetical protein AT1G58025:AT1G58025:DNA-binding bromodomain-containing protein 1Chr16:164584–168767 (+)1.449e-13
Glyma.16G003200 hypothetical protein NA 1Chr16:172940–178668 (-)1.449e-13
Glyma.16G003600 hypothetical protein AT5G49945:AT5G49945: 1Chr16:198072–202486 (-)5.717e-13
Glyma.16G115300 hypothetical protein NA 1Chr16:25584135–25585667 (+)5.948e-11
Glyma.16G115400 hypothetical protein NA 1Chr16:25604547–25606360 (+)5.948e-11
Glyma.16G115500 hypothetical protein NA 1Chr16:25622503–25630816 (+)5.948e-11
Glyma.16G115600 hypothetical protein AT1G13410:AT1G13410:Tetratricopeptide repeat (TPR)-like superfamily protein 1Chr16:25661245–25664376 (-)5.948e-11
Glyma.16G117400 hypothetical protein NA 1Chr16:26234552–26238233 (-)4.985e-12
Glyma.16G118100 hypothetical protein AT2G17570:cPT1:Undecaprenyl pyrophosphate synthetase family protein 1Chr16:26324650–26336836 (+)4.844e-12
Glyma.16G119400 hypothetical protein NA 1Chr16:26684278–26687087 (+)2.545e-12
Glyma.16G180000 hypothetical protein NA 1Chr16:34064572–34069421 (+)8.43e-11
Glyma.16G189100 hypothetical protein AT1G05190:emb2394:Ribosomal protein L6 family 1Chr16:35170253–35173950 (-)6.058e-13
Glyma.17G215500 KNAT5 NA 1Chr17:36212363–36217688 (-)5.794e-11
Glyma.17G215700 hypothetical protein AT5G11040:TRS120:TRS120 1Chr17:36319785–36329259 (-)2.753e-11
Glyma.18G260700 hypothetical protein NA 1Chr18:54660451–54661757 (+)2.353e-12
Glyma.19G128200 hypothetical protein NA 1Chr19:38739769–38743404 (+)1.426e-11
Glyma.20G019500 hypothetical protein AT1G21065:AT1G21065:secondary thiamine-phosphate synthase enzyme 1Chr20:2039210–2040459 (+)6.787e-13
Glyma.20G019700 hypothetical protein NA 1Chr20:2047020–2050862 (-)4.151e-12
Glyma.20G019800 hypothetical protein AT1G49350:AT1G49350:pfkB-like carbohydrate kinase family protein 1Chr20:2051817–2057262 (+)4.973e-13