Soybean mGWAS DBExplore The Genetic Basis Of Soybean Metabolism Glycine max
Overview Annotation GWAS Evidence Associated genes

P53560

Metabolite ID
P53560
Deionized mass
275.1977 Da
Average m/z
276.2045
Average RT
30.0563
Adduct
[M+H]+
Association scope
Overlapping genes only
Associated genes
42
GWAS result file
Available
Open in Soybean Metabolome Repository

Candidate annotations

Search compound candidates by deionized mass and tolerance. Follow compound IDs for database records, or use name searches to explore chemistry and soybean literature. About candidate annotations

GWAS Evidence

Dataset: indexed GWAS records.

Settings

SNP counts, plot highlights, gene associations and downloads use P < 10⁻¹⁰. Changing the threshold updates this page together.

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Associated genes

42 genes linked to SNP records with P < 10⁻¹⁰ in the selected scope. Supporting SNP records are counted per feature–gene pair.

Gene ID Alias Description Arabidopsis ortholog Supporting SNP recordsGene interval (1-based)Minimum P
Glyma.09G277300 hypothetical protein NA 2Chr09:49271634–49276648 (-)1.724e-11
Glyma.01G124100 hypothetical protein NA 1Chr01:42886229–42892204 (-)2.569e-11
Glyma.02G088200 hypothetical protein AT1G64680:AT1G64680:beta-carotene isomerase D27 1Chr02:7717452–7725490 (+)1.163e-11
Glyma.02G205300 hypothetical protein NA 1Chr02:39037472–39038396 (-)8.854e-11
Glyma.02G205400 hypothetical protein AT5G57880:MPS1:multipolar spindle 1 1Chr02:39040135–39043181 (-)1.796e-11
Glyma.03G023000 hypothetical protein AT4G00220:JLO:Lateral organ boundaries (LOB) domain family protein 1Chr03:2423540–2428634 (-)7.522e-16
Glyma.03G136000 hypothetical protein NA 1Chr03:35138670–35188160 (-)1.078e-11
Glyma.03G136100 hypothetical protein NA 1Chr03:35199503–35203392 (-)3.13e-12
Glyma.04G084800 hypothetical protein AT5G11630:NOXY2:uncharacterized protein 1Chr04:7187985–7192897 (+)2.625e-13
Glyma.05G226000 hypothetical protein AT5G19730:AT5G19730:Pectin lyase-like superfamily protein 1Chr05:40458098–40461736 (+)5.113e-13
Glyma.05G236400 hypothetical protein AT1G23210:GH9B6:glycosyl hydrolase 9B6__AT1G70710:GH9B1:glycosyl hydrolase 9B1 1Chr05:41274513–41279615 (-)5.539e-11
Glyma.05G236700 hypothetical protein AT4G33760:AT4G33760:tRNA synthetase class II (D, K and N) family protein 1Chr05:41301540–41310727 (+)4.722e-16
Glyma.05G237800 hypothetical protein AT1G48790:AMSH1:associated molecule with the SH3 domain of STAM 1 1Chr05:41406807–41413022 (-)2.872e-12
Glyma.06G019800 hypothetical protein NA 1Chr06:1494230–1501925 (+)5.624e-12
Glyma.06G291800 hypothetical protein NA 1Chr06:48044194–48047197 (-)2.37e-11
Glyma.06G292200 hypothetical protein AT5G44290:AT5G44290:Protein kinase superfamily protein 1Chr06:48100578–48107433 (-)2.37e-11
Glyma.06G316500 hypothetical protein AT2G47420:DIM1A:Ribosomal RNA adenine dimethylase family protein 1Chr06:50531222–50538652 (-)7.085e-11
Glyma.06G317100 hypothetical protein AT5G61520:AT5G61520:Major facilitator superfamily protein 1Chr06:50586679–50589765 (+)4.017e-11
Glyma.08G141100 hypothetical protein AT5G64910:AT5G64910:Serine/Threonine-kinase 1Chr08:10778910–10784589 (-)2.717e-11
Glyma.08G142200 hypothetical protein NA 1Chr08:10833827–10834390 (-)1.578e-11
Glyma.08G142400 WRKY6 WRKY transcription factor 6 NA 1Chr08:10843433–10846761 (-)1.578e-11
Glyma.08G142500 hypothetical protein NA 1Chr08:10848944–10850129 (+)2.482e-11
Glyma.09G062200 hypothetical protein AT2G19350:AT2G19350:transmembrane protein (DUF872) 1Chr09:5901280–5902349 (+)7.516e-11
Glyma.09G084300 hypothetical protein AT2G34680:AIR9:Outer arm dynein light chain 1 protein 1Chr09:10129602–10197250 (-)5.069e-12
Glyma.09G238200 NIP2-1 putative Si transporter NIP2-1 NA 1Chr09:46029192–46034136 (+)3.835e-11
Glyma.09G255700 hypothetical protein AT1G01540:AT1G01540:Protein kinase superfamily protein__AT4G01330:AT4G01330:Protein kinase superfamily protein 1Chr09:47507850–47511743 (+)6.988e-11
Glyma.09G270500 hypothetical protein AT1G09780:iPGAM1:Phosphoglycerate mutase, 2,3-bisphosphoglycerate-independent 1Chr09:48745649–48751140 (+)5.414e-11
Glyma.13G156000 hypothetical protein AT2G07560:HA6:H[+]-ATPase 6__AT3G42640:HA8:H[+]-ATPase 8 1Chr13:27104338–27109785 (+)3.724e-11
Glyma.13G203200 hypothetical protein AT3G52105:AT3G52105:DIS3-exonuclease-like protein 1Chr13:31720004–31725252 (+)1.844e-11
Glyma.13G203300 hypothetical protein AT3G63530:BB:RING/U-box superfamily protein 1Chr13:31727841–31735910 (-)1.844e-11
Glyma.13G203700 hypothetical protein NA 1Chr13:31780982–31784218 (+)1.844e-11
Glyma.13G203900 hypothetical protein NA 1Chr13:31793697–31796601 (-)6.677e-13
Glyma.15G035600 hypothetical protein AT3G46740:TOC75-III:translocon at the outer envelope membrane of chloroplasts 75-III 1Chr15:2830678–2835534 (+)2.271e-12
Glyma.15G124000 hypothetical protein NA 1Chr15:9845097–9849312 (-)6.173e-11
Glyma.15G124500 MLO-like protein 13 AT4G24250:MLO13:Seven transmembrane MLO family protein 1Chr15:9888761–9894068 (-)1.401e-16
Glyma.17G144000 hypothetical protein AT4G16760:ACX1:acyl-CoA oxidase 1 1Chr17:11759547–11765498 (-)6.084e-11
Glyma.18G111800 hypothetical protein AT1G32910:AT1G32910:HXXXD-type acyl-transferase family protein 1Chr18:13278653–13284970 (+)8.797e-11
Glyma.18G112600 hypothetical protein NA 1Chr18:13398219–13405422 (+)3.688e-13
Glyma.19G097300 hypothetical protein AT3G26890:AT3G26890:meiosis chromosome segregation family protein 1Chr19:34177996–34184886 (-)2.125e-11
Glyma.19G102000 ICE2 AT3G26744:ICE1:basic helix-loop-helix (bHLH) DNA-binding superfamily protein 1Chr19:34998146–35001862 (+)3.679e-11
Glyma.19G102200 hypothetical protein AT2G31410:AT2G31410:coiled-coil protein 1Chr19:35024582–35025690 (+)3.679e-11
Glyma.20G107200 hypothetical protein AT4G38540:AT4G38540:FAD/NAD(P)-binding oxidoreductase family protein 1Chr20:34984922–34988496 (+)1.053e-11