Soybean mGWAS DBExplore The Genetic Basis Of Soybean Metabolism Glycine max
Overview Annotation GWAS Evidence Associated genes

P53467

Metabolite ID
P53467
Deionized mass
449.2712 Da
Average m/z
450.2757
Average RT
30.0350
Adduct
[M+H]+
Association scope
Overlapping genes only
Associated genes
63
GWAS result file
Available
Open in Soybean Metabolome Repository

Candidate annotations

Search compound candidates by deionized mass and tolerance. Follow compound IDs for database records, or use name searches to explore chemistry and soybean literature. About candidate annotations

GWAS Evidence

Dataset: indexed GWAS records.

Settings

SNP counts, plot highlights, gene associations and downloads use P < 10⁻¹⁰. Changing the threshold updates this page together.

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Associated genes

63 genes linked to SNP records with P < 10⁻¹⁰ in the selected scope. Supporting SNP records are counted per feature–gene pair.

Gene ID Alias Description Arabidopsis ortholog Supporting SNP recordsGene interval (1-based)Minimum P
Glyma.16G209300 hypothetical protein NA 4Chr16:36856833–36863994 (-)2.587e-13
Glyma.08G123500 hypothetical protein NA 3Chr08:9494946–9505931 (-)4.231e-16
Glyma.16G210200 hypothetical protein NA 3Chr16:36933402–36938940 (+)1.839e-13
Glyma.16G210300 hypothetical protein AT1G73340:AT1G73340:Cytochrome P450 superfamily protein 3Chr16:36943073–36948828 (+)6.921e-15
Glyma.08G119300 hypothetical protein AT1G29330:ERD2:ER lumen protein retaining receptor family protein 2Chr08:9198213–9201688 (-)9.413e-16
Glyma.08G122200 hypothetical protein NA 2Chr08:9416766–9429995 (-)4.231e-16
Glyma.08G122300 hypothetical protein AT1G29390:COR314-TM2:cold regulated 314 thylakoid membrane 2 2Chr08:9435391–9437279 (+)4.231e-16
Glyma.08G122500 hypothetical protein NA 2Chr08:9441329–9445315 (-)4.231e-16
Glyma.13G134400 hypothetical protein AT2G37370:AT2G37370:centrosomal protein of 135 kDa-like protein 2Chr13:24677399–24693129 (-)7.29e-12
Glyma.13G135700 hypothetical protein NA 2Chr13:24812720–24818735 (+)4.952e-12
Glyma.13G135800 hypothetical protein AT5G02800:CDL1:Protein kinase superfamily protein 2Chr13:24820151–24823999 (-)4.952e-12
Glyma.15G140700 hypothetical protein NA 2Chr15:11520847–11522863 (-)9.936e-11
Glyma.16G118100 hypothetical protein AT2G17570:cPT1:Undecaprenyl pyrophosphate synthetase family protein 2Chr16:26324650–26336836 (+)2.19e-11
Glyma.16G196900 hypothetical protein NA 2Chr16:35841279–35846894 (-)3.372e-11
Glyma.16G208500 EIF6 AT3G55620:eIF6A:Translation initiation factor IF6 2Chr16:36806718–36809299 (+)4.909e-13
Glyma.17G216700 hypothetical protein AT4G31930:AT4G31930:Mitochondrial glycoprotein family protein 2Chr17:36510062–36519347 (+)7.929e-12
Glyma.01G168800 hypothetical protein AT1G24430:AT1G24430:HXXXD-type acyl-transferase family protein 1Chr01:50633986–50636589 (+)7.161e-12
Glyma.01G169700 hypothetical protein AT4G36410:UBC17:ubiquitin-conjugating enzyme 17 1Chr01:50715084–50719427 (-)6.102e-13
Glyma.01G169800 hypothetical protein AT4G36400:D2HGDH:FAD-linked oxidases family protein 1Chr01:50726088–50733347 (-)6.102e-13
Glyma.02G133800 hypothetical protein AT1G49660:CXE5:carboxyesterase 5 1Chr02:13850366–13851962 (-)1.087e-11
Glyma.03G023000 hypothetical protein AT4G00220:JLO:Lateral organ boundaries (LOB) domain family protein 1Chr03:2423540–2428634 (-)1.783e-11
Glyma.04G084200 hypothetical protein AT2G25830:AT2G25830:YebC-like protein 1Chr04:7137351–7146570 (-)4.397e-11
Glyma.05G149300 hypothetical protein AT2G03870:EMB2816:Small nuclear ribonucleoprotein family protein 1Chr05:34357418–34361032 (-)6.828e-13
Glyma.05G149900 hypothetical protein NA 1Chr05:34389242–34393621 (-)6.828e-13
Glyma.05G236700 hypothetical protein AT4G33760:AT4G33760:tRNA synthetase class II (D, K and N) family protein 1Chr05:41301540–41310727 (+)6.616e-13
Glyma.05G237800 hypothetical protein AT1G48790:AMSH1:associated molecule with the SH3 domain of STAM 1 1Chr05:41406807–41413022 (-)9.306e-11
Glyma.08G117500 hypothetical protein AT4G18780:IRX1:cellulose synthase family protein 1Chr08:9065033–9071774 (-)8.079e-11
Glyma.08G118400 hypothetical protein AT4G18810:AT4G18810:NAD(P)-binding Rossmann-fold superfamily protein 1Chr08:9147404–9153858 (-)8.079e-11
Glyma.08G118500 hypothetical protein NA 1Chr08:9161382–9162471 (+)1.133e-11
Glyma.08G122600 hypothetical protein NA 1Chr08:9445153–9450502 (+)8.619e-11
Glyma.08G122700 hypothetical protein AT1G29350:AT1G29350:RNA polymerase II degradation factor-like protein (DUF1296) 1Chr08:9452604–9458932 (+)4.231e-16
Glyma.09G016500 hypothetical protein NA 1Chr09:1274652–1276853 (-)6.191e-11
Glyma.09G016800 hypothetical protein NA 1Chr09:1300913–1311894 (+)8.701e-11
Glyma.09G186700 hypothetical protein AT1G20050:HYD1:C-8,7 sterol isomerase 1Chr09:41147591–41150204 (+)4.562e-11
Glyma.09G252100 hypothetical protein AT1G79790:FHY1:Haloacid dehalogenase-like hydrolase (HAD) superfamily protein 1Chr09:47245185–47248478 (+)3.113e-11
Glyma.09G282900 hypothetical protein AT2G29090:CYP707A2:cytochrome P450, family 707, subfamily A, polypeptide 2 1Chr09:49863377–49871270 (+)7.161e-13
Glyma.10G081700 hypothetical protein NA 1Chr10:9752508–9758422 (+)1.117e-11
Glyma.11G048300 hypothetical protein AT4G37640:ACA2:calcium ATPase 2 1Chr11:3601241–3607177 (+)1.792e-12
Glyma.11G049700 hypothetical protein NA 1Chr11:3731308–3734534 (+)5.696e-14
Glyma.11G050300 hypothetical protein AT2G23093:AT2G23093:Major facilitator superfamily protein 1Chr11:3765453–3771565 (+)1.902e-13
Glyma.11G050500 hypothetical protein AT5G67370:CGLD27:DUF1230 family protein (DUF1230) 1Chr11:3778152–3782174 (+)1.902e-13
Glyma.11G050600 hypothetical protein NA 1Chr11:3779988–3786583 (-)1.902e-13
Glyma.11G051600 hypothetical protein NA 1Chr11:3857225–3859564 (-)1.902e-13
Glyma.12G054500 hypothetical protein NA 1Chr12:3938604–3943724 (+)1.846e-11
Glyma.12G054700 hypothetical protein AT3G45140:LOX2:lipoxygenase 2 1Chr12:3949453–3957386 (-)7.862e-12
Glyma.13G134300 hypothetical protein NA 1Chr13:24664171–24665742 (-)7.29e-12
Glyma.13G135300 hypothetical protein NA 1Chr13:24770681–24773826 (+)6.941e-11
Glyma.13G135400 hypothetical protein AT5G12130:PDE149:integral membrane TerC family protein 1Chr13:24786242–24791938 (+)6.941e-11
Glyma.13G135500 hypothetical protein AT5G02780:GSTL1:glutathione transferase lambda 1 1Chr13:24798567–24801567 (+)4.952e-12
Glyma.14G068100 hypothetical protein AT3G12550:FDM3:XH/XS domain-containing protein 1Chr14:5701618–5711043 (-)1.407e-12
Glyma.16G105400 hypothetical protein AT2G43040:NPG1:tetratricopeptide repeat (TPR)-containing protein 1Chr16:21357465–21364357 (-)8.666e-11
Glyma.16G117400 hypothetical protein NA 1Chr16:26234552–26238233 (-)5.436e-11
Glyma.16G119300 hypothetical protein NA 1Chr16:26643902–26644416 (+)2.229e-11
Glyma.16G119400 hypothetical protein NA 1Chr16:26684278–26687087 (+)9.56e-12
Glyma.16G207900 hypothetical protein AT5G08450:AT5G08450:zinc finger CCCH domain protein 1Chr16:36754888–36763450 (+)8.04e-11
Glyma.16G209900 hypothetical protein NA 1Chr16:36919141–36924601 (+)1.839e-13
Glyma.16G210400 hypothetical protein AT1G73350:AT1G73350:ankyrin repeat protein 1Chr16:36949685–36953467 (+)6.921e-15
Glyma.17G215500 KNAT5 NA 1Chr17:36212363–36217688 (-)1.696e-13
Glyma.19G012100 hypothetical protein AT3G28150:TBL22:TRICHOME BIREFRINGENCE-LIKE 22 1Chr19:1155711–1161298 (-)4.961e-12
Glyma.19G012300 hypothetical protein NA 1Chr19:1165111–1173031 (-)4.961e-12
Glyma.19G128200 hypothetical protein NA 1Chr19:38739769–38743404 (+)5.757e-11
Glyma.19G216500 hypothetical protein AT3G62390:TBL6:TRICHOME BIREFRINGENCE-LIKE 6 1Chr19:46951591–46954520 (+)2.692e-12
Glyma.19G218100 hypothetical protein AT1G02390:GPAT2:glycerol-3-phosphate acyltransferase 2 1Chr19:47082133–47085750 (+)5.168e-11