Soybean mGWAS DBExplore The Genetic Basis Of Soybean Metabolism Glycine max
Overview Annotation GWAS Evidence Associated genes

P53432

Metabolite ID
P53432
Deionized mass
259.8939 Da
Average m/z
260.9011
Average RT
30.0177
Adduct
[M+H]+
Association scope
Overlapping genes only
Associated genes
40
GWAS result file
Available
Open in Soybean Metabolome Repository

Candidate annotations

Search compound candidates by deionized mass and tolerance. Follow compound IDs for database records, or use name searches to explore chemistry and soybean literature. About candidate annotations

GWAS Evidence

Dataset: indexed GWAS records.

Settings

SNP counts, plot highlights, gene associations and downloads use P < 10⁻¹⁰. Changing the threshold updates this page together.

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Associated genes

40 genes linked to SNP records with P < 10⁻¹⁰ in the selected scope. Supporting SNP records are counted per feature–gene pair.

Gene ID Alias Description Arabidopsis ortholog Supporting SNP recordsGene interval (1-based)Minimum P
Glyma.01G036200 hypothetical protein AT1G10510:emb2004:RNI-like superfamily protein 3Chr01:3791180–3811591 (-)1.568e-13
Glyma.08G145300 hypothetical protein AT5G64750:ABR1:Integrase-type DNA-binding superfamily protein 3Chr08:11041449–11043230 (-)5.191e-12
Glyma.01G036500 hypothetical protein AT1G59980:ARL2:ARG1-like 2__AT1G24120:ARL1:ARG1-like 1 2Chr01:3821377–3825854 (-)1.568e-13
Glyma.03G021400 hypothetical protein AT2G45540:AT2G45540:WD-40 repeat family protein / beige-like protein 2Chr03:2202325–2234931 (+)8.03e-11
Glyma.08G142400 WRKY6 WRKY transcription factor 6 NA 2Chr08:10843433–10846761 (-)3.995e-11
Glyma.08G144000 hypothetical protein NA 2Chr08:10981530–10989743 (+)3.995e-11
Glyma.01G036300 hypothetical protein NA 1Chr01:3813757–3814433 (+)1.387e-11
Glyma.01G039600 hypothetical protein NA 1Chr01:4300332–4302844 (-)4.09e-11
Glyma.03G020800 hypothetical protein AT3G61050:NTMC2T4:Calcium-dependent lipid-binding (CaLB domain) family protein 1Chr03:2124895–2135692 (-)7.472e-12
Glyma.03G023000 hypothetical protein AT4G00220:JLO:Lateral organ boundaries (LOB) domain family protein 1Chr03:2423540–2428634 (-)5.653e-13
Glyma.04G112200 hypothetical protein AT5G51750:SBT1.3:subtilase 1.3 1Chr04:12562882–12565006 (+)7.517e-11
Glyma.05G224700 hypothetical protein NA 1Chr05:40351005–40361888 (+)2.954e-11
Glyma.05G226000 hypothetical protein AT5G19730:AT5G19730:Pectin lyase-like superfamily protein 1Chr05:40458098–40461736 (+)5.901e-11
Glyma.06G145300 hypothetical protein AT5G05340:PRX52:Peroxidase superfamily protein 1Chr06:11849535–11851671 (+)5.995e-11
Glyma.07G021800 hypothetical protein AT1G80920:J8:Chaperone DnaJ-domain superfamily protein 1Chr07:1697119–1698666 (+)1.69e-11
Glyma.08G141800 hypothetical protein AT1G74050:AT1G74050:Ribosomal protein L6 family protein 1Chr08:10823835–10825767 (+)2.515e-11
Glyma.08G143000 hypothetical protein AT3G57940:AT3G57940:GNAT acetyltransferase (DUF699)__AT1G10490:AT1G10490:GNAT acetyltransferase (DUF699) 1Chr08:10872816–10885213 (-)3.995e-11
Glyma.08G143200 hypothetical protein AT4G39420:AT4G39420:spatacsin carboxy-terminus protein 1Chr08:10898111–10922975 (-)3.995e-11
Glyma.08G143400 hypothetical protein NA 1Chr08:10941737–10944154 (+)9.485e-12
Glyma.08G143700 hypothetical protein NA 1Chr08:10963025–10963671 (+)1.278e-11
Glyma.08G143900 hypothetical protein AT1G20580:AT1G20580:Small nuclear ribonucleoprotein family protein 1Chr08:10973479–10976014 (-)8.642e-12
Glyma.08G144600 hypothetical protein NA 1Chr08:10997491–11002758 (+)3.995e-11
Glyma.08G144700 hypothetical protein NA 1Chr08:11004138–11009322 (-)3.995e-11
Glyma.08G144900 hypothetical protein NA 1Chr08:11022996–11023930 (-)2.515e-11
Glyma.08G145400 hypothetical protein AT5G09880:AT5G09880:Splicing factor, CC1-like protein 1Chr08:11050835–11058461 (+)2.515e-11
Glyma.08G145500 hypothetical protein NA 1Chr08:11061447–11062601 (-)2.515e-11
Glyma.08G145600 hypothetical protein AT5G64740:CESA6:cellulose synthase 6__AT4G39350:CESA2:cellulose synthase A2__AT5G09870:CESA5:cellulose synthase 5 1Chr08:11066152–11073328 (-)2.515e-11
Glyma.08G145700 hypothetical protein AT5G64730:AT5G64730:Transducin/WD40 repeat-like superfamily protein 1Chr08:11083230–11086950 (-)1.187e-13
Glyma.08G145900 hypothetical protein AT4G39330:CAD9:cinnamyl alcohol dehydrogenase 9 1Chr08:11092669–11096142 (-)1.187e-13
Glyma.08G146000 hypothetical protein AT5G09850:AT5G09850:Transcription elongation factor (TFIIS) family protein 1Chr08:11103557–11106499 (+)5.121e-12
Glyma.08G146300 hypothetical protein AT5G09820:AT5G09820:Plastid-lipid associated protein PAP / fibrillin family protein 1Chr08:11136129–11139057 (-)7.32e-12
Glyma.09G016500 hypothetical protein NA 1Chr09:1274652–1276853 (-)2.652e-12
Glyma.09G016800 hypothetical protein NA 1Chr09:1300913–1311894 (+)1.427e-12
Glyma.12G108600 hypothetical protein NA 1Chr12:9994609–9997302 (-)6.496e-11
Glyma.12G109500 hypothetical protein AT4G03415:PP2C52:Protein phosphatase 2C family protein 1Chr12:10308026–10314332 (-)6.496e-11
Glyma.16G003000 hypothetical protein AT1G58025:AT1G58025:DNA-binding bromodomain-containing protein 1Chr16:164584–168767 (+)3.584e-11
Glyma.16G003200 hypothetical protein NA 1Chr16:172940–178668 (-)3.584e-11
Glyma.16G003600 hypothetical protein AT5G49945:AT5G49945: 1Chr16:198072–202486 (-)3.49e-11
Glyma.19G150000 hypothetical protein AT3G58060:AT3G58060:Cation efflux family protein 1Chr19:41018746–41025024 (+)4.247e-11
Glyma.20G107200 hypothetical protein AT4G38540:AT4G38540:FAD/NAD(P)-binding oxidoreductase family protein 1Chr20:34984922–34988496 (+)2.023e-11