Soybean mGWAS DBExplore The Genetic Basis Of Soybean Metabolism Glycine max
Overview Annotation GWAS Evidence Associated genes

P53333

Metabolite ID
P53333
Deionized mass
108.0100 Da
Average m/z
109.0176
Average RT
29.9282
Adduct
[M+H]+
Association scope
Overlapping genes only
Associated genes
27
GWAS result file
Available
Open in Soybean Metabolome Repository

Candidate annotations

Search compound candidates by deionized mass and tolerance. Follow compound IDs for database records, or use name searches to explore chemistry and soybean literature. About candidate annotations

GWAS Evidence

Dataset: indexed GWAS records.

Settings

SNP counts, plot highlights, gene associations and downloads use P < 10⁻¹⁰. Changing the threshold updates this page together.

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Associated genes

27 genes linked to SNP records with P < 10⁻¹⁰ in the selected scope. Supporting SNP records are counted per feature–gene pair.

Gene ID Alias Description Arabidopsis ortholog Supporting SNP recordsGene interval (1-based)Minimum P
Glyma.06G305700 hypothetical protein AT2G05710:ACO3:aconitase 3 3Chr06:49451501–49461369 (-)5.938e-11
Glyma.08G123500 hypothetical protein NA 2Chr08:9494946–9505931 (-)2.173e-11
Glyma.01G120000 hypothetical protein NA 1Chr01:41270985–41274854 (+)3.428e-11
Glyma.06G200200 hypothetical protein NA 1Chr06:18327920–18331068 (-)2.761e-11
Glyma.06G305300 hypothetical protein NA 1Chr06:49431590–49435985 (-)5.938e-11
Glyma.06G305600 hypothetical protein NA 1Chr06:49446542–49450635 (-)5.938e-11
Glyma.06G316500 hypothetical protein AT2G47420:DIM1A:Ribosomal RNA adenine dimethylase family protein 1Chr06:50531222–50538652 (-)2.786e-11
Glyma.08G122200 hypothetical protein NA 1Chr08:9416766–9429995 (-)2.173e-11
Glyma.08G122300 hypothetical protein AT1G29390:COR314-TM2:cold regulated 314 thylakoid membrane 2 1Chr08:9435391–9437279 (+)2.173e-11
Glyma.08G122500 hypothetical protein NA 1Chr08:9441329–9445315 (-)2.173e-11
Glyma.08G122700 hypothetical protein AT1G29350:AT1G29350:RNA polymerase II degradation factor-like protein (DUF1296) 1Chr08:9452604–9458932 (+)2.173e-11
Glyma.09G082000 hypothetical protein NA 1Chr09:9638564–9650178 (+)3.386e-12
Glyma.09G084300 hypothetical protein AT2G34680:AIR9:Outer arm dynein light chain 1 protein 1Chr09:10129602–10197250 (-)2.286e-11
Glyma.11G118200 hypothetical protein NA 1Chr11:8979431–8983783 (+)7.797e-11
Glyma.12G028800 hypothetical protein AT1G50300:TAF15:TBP-associated factor 15 1Chr12:2148313–2153234 (-)3.222e-12
Glyma.13G203900 hypothetical protein NA 1Chr13:31793697–31796601 (-)4.143e-11
Glyma.16G018000 hypothetical protein NA 1Chr16:1601748–1607341 (-)5.882e-11
Glyma.16G145600 hypothetical protein AT1G11310:MLO2:Seven transmembrane MLO family protein__AT2G39200:MLO12:Seven transmembrane MLO family protein__AT1G6156… 1Chr16:30652378–30659548 (+)6.266e-11
Glyma.18G044100 hypothetical protein NA 1Chr18:3809348–3812858 (-)2.656e-11
Glyma.18G044200 hypothetical protein AT5G17300:RVE1:Homeodomain-like superfamily protein 1Chr18:3813589–3817289 (-)2.656e-11
Glyma.19G009400 hypothetical protein AT5G40270:AT5G40270:HD domain-containing metal-dependent phosphohydrolase family protein 1Chr19:885045–893253 (+)9.628e-11
Glyma.19G011600 hypothetical protein NA 1Chr19:1111789–1116419 (+)4.902e-12
Glyma.19G011700 hypothetical protein AT3G01420:DOX1:Peroxidase superfamily protein 1Chr19:1123637–1130946 (+)4.902e-12
Glyma.19G011800 hypothetical protein AT3G01420:DOX1:Peroxidase superfamily protein 1Chr19:1134716–1143232 (+)5.013e-11
Glyma.19G012100 hypothetical protein AT3G28150:TBL22:TRICHOME BIREFRINGENCE-LIKE 22 1Chr19:1155711–1161298 (-)2.241e-12
Glyma.19G012300 hypothetical protein NA 1Chr19:1165111–1173031 (-)2.241e-12
Glyma.20G013100 hypothetical protein NA 1Chr20:1134080–1135710 (-)9.565e-11