Soybean mGWAS DBExplore The Genetic Basis Of Soybean Metabolism Glycine max
Overview Annotation GWAS Evidence Associated genes

P53289

Metabolite ID
P53289
Deionized mass
510.1250 Da
Average m/z
511.1352
Average RT
29.8799
Adduct
[M+H]+
Association scope
Overlapping genes only
Associated genes
57
GWAS result file
Available
Open in Soybean Metabolome Repository

Candidate annotations

Search compound candidates by deionized mass and tolerance. Follow compound IDs for database records, or use name searches to explore chemistry and soybean literature. About candidate annotations

GWAS Evidence

Dataset: indexed GWAS records.

Settings

SNP counts, plot highlights, gene associations and downloads use P < 10⁻¹⁰. Changing the threshold updates this page together.

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Associated genes

57 genes linked to SNP records with P < 10⁻¹⁰ in the selected scope. Supporting SNP records are counted per feature–gene pair.

Gene ID Alias Description Arabidopsis ortholog Supporting SNP recordsGene interval (1-based)Minimum P
Glyma.09G050000 hypothetical protein NA 2Chr09:4357237–4360131 (+)2.945e-11
Glyma.12G202400 hypothetical protein AT4G03415:PP2C52:Protein phosphatase 2C family protein 2Chr12:36289704–36295084 (-)6.017e-16
Glyma.12G203700 hypothetical protein AT4G28260:AT4G28260:acyl-UDP-N-acetylglucosamine O-acyltransferase 2Chr12:36406747–36413696 (+)3.325e-15
Glyma.12G204400 hypothetical protein AT4G03560:TPC1:two-pore channel 1 2Chr12:36473422–36498915 (+)1.744e-16
Glyma.13G134400 hypothetical protein AT2G37370:AT2G37370:centrosomal protein of 135 kDa-like protein 2Chr13:24677399–24693129 (-)4.469e-11
Glyma.13G135700 hypothetical protein NA 2Chr13:24812720–24818735 (+)3.225e-12
Glyma.13G135800 hypothetical protein AT5G02800:CDL1:Protein kinase superfamily protein 2Chr13:24820151–24823999 (-)3.225e-12
Glyma.14G201600 hypothetical protein NA 2Chr14:46703283–46706500 (+)7.236e-13
Glyma.16G196900 hypothetical protein NA 2Chr16:35841279–35846894 (-)6.008e-11
Glyma.01G169700 hypothetical protein AT4G36410:UBC17:ubiquitin-conjugating enzyme 17 1Chr01:50715084–50719427 (-)8.028e-11
Glyma.01G169800 hypothetical protein AT4G36400:D2HGDH:FAD-linked oxidases family protein 1Chr01:50726088–50733347 (-)8.028e-11
Glyma.03G023000 hypothetical protein AT4G00220:JLO:Lateral organ boundaries (LOB) domain family protein 1Chr03:2423540–2428634 (-)8.571e-13
Glyma.05G231800 ALDH2C1 aldehyde dehydrogenase family 2 member C1 AT3G24503:ALDH2C4:aldehyde dehydrogenase 2C4 1Chr05:40924505–40929251 (+)1.65e-12
Glyma.05G236400 hypothetical protein AT1G23210:GH9B6:glycosyl hydrolase 9B6__AT1G70710:GH9B1:glycosyl hydrolase 9B1 1Chr05:41274513–41279615 (-)1.722e-13
Glyma.05G236700 hypothetical protein AT4G33760:AT4G33760:tRNA synthetase class II (D, K and N) family protein 1Chr05:41301540–41310727 (+)1.961e-12
Glyma.06G079400 hypothetical protein NA 1Chr06:6105463–6107101 (+)9.8e-11
Glyma.06G084200 hypothetical protein NA 1Chr06:6479142–6484077 (+)5.884e-11
Glyma.06G084800 hypothetical protein NA 1Chr06:6515571–6517480 (-)1.246e-13
Glyma.06G085000 hypothetical protein NA 1Chr06:6524339–6529016 (-)1.246e-13
Glyma.06G085100 hypothetical protein NA 1Chr06:6531956–6537295 (-)1.246e-13
Glyma.06G085200 hypothetical protein NA 1Chr06:6540849–6545557 (+)3.474e-14
Glyma.06G112300 hypothetical protein AT1G44780:AT1G44780:translation initiation factor__AT4G08310:AT4G08310:DNA ligase 1Chr06:9113982–9118848 (-)7.036e-11
Glyma.06G112600 hypothetical protein AT1G77620:AT1G77620:P-loop containing nucleoside triphosphate hydrolases superfamily protein 1Chr06:9134358–9144986 (+)7.036e-11
Glyma.06G112700 hypothetical protein AT1G44760:AT1G44760:Adenine nucleotide alpha hydrolases-like superfamily protein 1Chr06:9156973–9158659 (+)7.036e-11
Glyma.07G015700 hypothetical protein AT1G79750:NADP-ME4:NADP-malic enzyme 4 1Chr07:1244977–1251198 (-)2.03e-11
Glyma.07G021800 hypothetical protein AT1G80920:J8:Chaperone DnaJ-domain superfamily protein 1Chr07:1697119–1698666 (+)7.393e-11
Glyma.09G049400 hypothetical protein NA 1Chr09:4296096–4296806 (-)7.317e-11
Glyma.09G050100 hypothetical protein AT1G30910:AT1G30910:Molybdenum cofactor sulfurase family protein__AT5G44720:AT5G44720:Molybdenum cofactor sulfurase fam… 1Chr09:4363430–4366853 (+)8.224e-11
Glyma.09G186700 hypothetical protein AT1G20050:HYD1:C-8,7 sterol isomerase 1Chr09:41147591–41150204 (+)2.161e-13
Glyma.09G187600 hypothetical protein AT5G19460:NUDT20:nudix hydrolase homolog 20 1Chr09:41213588–41217191 (+)7.649e-11
Glyma.12G108600 hypothetical protein NA 1Chr12:9994609–9997302 (-)4.37e-14
Glyma.12G109500 hypothetical protein AT4G03415:PP2C52:Protein phosphatase 2C family protein 1Chr12:10308026–10314332 (-)4.37e-14
Glyma.12G114500 hypothetical protein AT4G22930:PYR4:pyrimidin 4 1Chr12:11396572–11400825 (-)5.379e-14
Glyma.12G114900 hypothetical protein NA 1Chr12:11457987–11462951 (-)5.379e-14
Glyma.12G198700 hypothetical protein AT5G62990:emb1692:Ubiquitin carboxyl-terminal hydrolase family protein 1Chr12:36001658–36004086 (+)5.163e-11
Glyma.12G202200 hypothetical protein AT2G20860:LIP1:lipoic acid synthase 1 1Chr12:36267599–36271584 (+)2.99e-14
Glyma.12G202300 hypothetical protein NA 1Chr12:36275438–36276838 (+)2.99e-14
Glyma.12G203600 EXPB8 AT2G20750:EXPB1:expansin B1 1Chr12:36390283–36394245 (-)1.697e-15
Glyma.12G204000 hypothetical protein AT1G03687:AT1G03687:DTW domain-containing protein 1Chr12:36428558–36432835 (+)1.744e-16
Glyma.12G204600 hypothetical protein AT4G28310:AT4G28310:microtubule-associated protein 1Chr12:36504234–36505245 (+)2.546e-14
Glyma.12G205900 hypothetical protein NA 1Chr12:36622011–36625824 (+)1.327e-11
Glyma.12G212300 hypothetical protein AT3G58710:WRKY69:WRKY DNA-binding protein 69 1Chr12:37131153–37134096 (+)4.407e-11
Glyma.12G212800 hypothetical protein NA 1Chr12:37179924–37185798 (-)4.882e-11
Glyma.13G134300 hypothetical protein NA 1Chr13:24664171–24665742 (-)4.469e-11
Glyma.13G135300 hypothetical protein NA 1Chr13:24770681–24773826 (+)3.88e-11
Glyma.13G135400 hypothetical protein AT5G12130:PDE149:integral membrane TerC family protein 1Chr13:24786242–24791938 (+)3.88e-11
Glyma.13G135500 hypothetical protein AT5G02780:GSTL1:glutathione transferase lambda 1 1Chr13:24798567–24801567 (+)3.225e-12
Glyma.14G068500 hypothetical protein NA 1Chr14:5741909–5745574 (-)3.362e-11
Glyma.14G093100 hypothetical protein NA 1Chr14:8654730–8655892 (-)8.967e-12
Glyma.14G197700 hypothetical protein AT5G58470:TAF15b:TBP-associated factor 15B 1Chr14:46291986–46298337 (+)8.987e-13
Glyma.14G198000 hypothetical protein NA 1Chr14:46334117–46336863 (+)8.987e-13
Glyma.14G201700 hypothetical protein NA 1Chr14:46711634–46715644 (-)7.236e-13
Glyma.15G124500 MLO-like protein 13 AT4G24250:MLO13:Seven transmembrane MLO family protein 1Chr15:9888761–9894068 (-)5.241e-11
Glyma.20G106800 hypothetical protein AT4G38520:AT4G38520:Protein phosphatase 2C family protein__AT3G51370:AT3G51370:Protein phosphatase 2C family protein 1Chr20:34935548–34940516 (-)1.318e-11
Glyma.20G107000 hypothetical protein NA 1Chr20:34968161–34968457 (+)3.145e-11
Glyma.20G109000 hypothetical protein AT4G32640:AT4G32640:Sec23/Sec24 protein transport family protein__AT3G44340:CEF:uncharacterized protein 1Chr20:35134138–35152085 (-)1.555e-11
Glyma.20G109100 hypothetical protein AT1G14590:AT1G14590:Nucleotide-diphospho-sugar transferase family protein 1Chr20:35166747–35171332 (+)1.555e-11