Soybean mGWAS DBExplore The Genetic Basis Of Soybean Metabolism Glycine max
Overview Annotation GWAS Evidence Associated genes

P53199

Metabolite ID
P53199
Deionized mass
438.2391 Da
Average m/z
439.2449
Average RT
29.7936
Adduct
[M+H]+
Association scope
Overlapping genes only
Associated genes
47
GWAS result file
Available
Open in Soybean Metabolome Repository

Candidate annotations

Search compound candidates by deionized mass and tolerance. Follow compound IDs for database records, or use name searches to explore chemistry and soybean literature. About candidate annotations

GWAS Evidence

Dataset: indexed GWAS records.

Settings

SNP counts, plot highlights, gene associations and downloads use P < 10⁻¹⁰. Changing the threshold updates this page together.

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Associated genes

47 genes linked to SNP records with P < 10⁻¹⁰ in the selected scope. Supporting SNP records are counted per feature–gene pair.

Gene ID Alias Description Arabidopsis ortholog Supporting SNP recordsGene interval (1-based)Minimum P
Glyma.06G289400 hypothetical protein AT2G20580:RPN1A:26S proteasome regulatory subunit S2 1A__AT4G28470:RPN1B:26S proteasome regulatory subunit S2 1B 4Chr06:47813934–47821512 (+)3.297e-12
Glyma.05G182500 hypothetical protein AT5G65210:TGA1:bZIP transcription factor family protein 2Chr05:37029299–37037313 (+)9.09e-12
Glyma.07G021800 hypothetical protein AT1G80920:J8:Chaperone DnaJ-domain superfamily protein 2Chr07:1697119–1698666 (+)2.74e-12
Glyma.13G134400 hypothetical protein AT2G37370:AT2G37370:centrosomal protein of 135 kDa-like protein 2Chr13:24677399–24693129 (-)1.29e-11
Glyma.13G135700 hypothetical protein NA 2Chr13:24812720–24818735 (+)4.325e-13
Glyma.13G135800 hypothetical protein AT5G02800:CDL1:Protein kinase superfamily protein 2Chr13:24820151–24823999 (-)4.325e-13
Glyma.16G031600 hypothetical protein NA 2Chr16:2964569–2985013 (+)4.482e-11
Glyma.20G218500 hypothetical protein AT4G10465:AT4G10465:Heavy metal transport/detoxification superfamily protein__AT2G18196:AT2G18196:Heavy metal transport… 2Chr20:45428471–45432099 (+)4.805e-15
Glyma.20G218700 hypothetical protein AT5G47520:RABA5a:RAB GTPase homolog A5A 2Chr20:45447355–45452750 (-)3.255e-14
Glyma.03G016700 hypothetical protein AT4G00740:QUA3:S-adenosyl-L-methionine-dependent methyltransferases superfamily protein 1Chr03:1683395–1688893 (-)9.115e-11
Glyma.03G018800 hypothetical protein AT2G45680:TCP9:TCP family transcription factor 1Chr03:1875182–1876855 (+)9.83e-11
Glyma.03G023000 hypothetical protein AT4G00220:JLO:Lateral organ boundaries (LOB) domain family protein 1Chr03:2423540–2428634 (-)1.363e-11
Glyma.03G036500 WNK5 AT3G51630:WNK5:with no lysine (K) kinase 5 1Chr03:4402746–4408323 (+)5.175e-11
Glyma.05G182900 hypothetical protein NA 1Chr05:37056753–37057349 (-)4.924e-11
Glyma.05G183100 hypothetical protein AT5G64940:ATH13:ABC2 homolog 13 1Chr05:37059525–37070146 (-)4.924e-11
Glyma.05G219200 hypothetical protein NA 1Chr05:39875137–39879113 (-)1.322e-14
Glyma.05G237800 hypothetical protein AT1G48790:AMSH1:associated molecule with the SH3 domain of STAM 1 1Chr05:41406807–41413022 (-)4.925e-12
Glyma.06G289300 hypothetical protein AT2G20570:GPRI1:GBF's pro-rich region-interacting factor 1 1Chr06:47797509–47802933 (+)1.995e-11
Glyma.06G289600 hypothetical protein AT5G51740:AT5G51740:Peptidase family M48 family protein 1Chr06:47831855–47835534 (-)3.5e-13
Glyma.06G292900 hypothetical protein AT4G03540:AT4G03540:Uncharacterized protein family (UPF0497) 1Chr06:48170133–48173010 (-)7.52e-12
Glyma.06G293300 hypothetical protein AT4G28280:LLG3:LORELEI-LIKE-GPI ANCHORED PROTEIN 3 1Chr06:48198132–48201464 (-)5.255e-11
Glyma.07G013400 hypothetical protein AT3G21310:AT3G21310:Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein 1Chr07:1028243–1033837 (-)7.981e-12
Glyma.07G013500 hypothetical protein NA 1Chr07:1036819–1041984 (-)7.981e-12
Glyma.07G021100 hypothetical protein NA 1Chr07:1647678–1650627 (+)4.282e-11
Glyma.07G021600 hypothetical protein AT5G48930:HCT:hydroxycinnamoyl-CoA shikimate/quinate hydroxycinnamoyl transferase 1Chr07:1673827–1680014 (-)4.282e-11
Glyma.07G021700 hypothetical protein NA 1Chr07:1684537–1692320 (+)8.754e-12
Glyma.08G139300 hypothetical protein AT2G22125:CSI1:binding protein 1Chr08:10653279–10664544 (-)5.779e-12
Glyma.09G069400 hypothetical protein NA 1Chr09:7055066–7058933 (+)3.498e-11
Glyma.10G078700 hypothetical protein NA 1Chr10:8882318–8903950 (+)4.714e-11
Glyma.10G079100 hypothetical protein NA 1Chr10:8960669–8962364 (-)4.714e-11
Glyma.10G079800 hypothetical protein NA 1Chr10:9223520–9228511 (-)4.714e-11
Glyma.10G080000 hypothetical protein AT3G11660:NHL1:NDR1/HIN1-like 1__AT3G52470:AT3G52470:Late embryosis abundant (LEA) hydroxyproline-rich glycoprotein fam… 1Chr10:9258476–9260697 (-)4.714e-11
Glyma.10G081200 hypothetical protein NA 1Chr10:9600771–9603988 (-)4.508e-11
Glyma.10G081700 hypothetical protein NA 1Chr10:9752508–9758422 (+)5.818e-11
Glyma.12G204000 hypothetical protein AT1G03687:AT1G03687:DTW domain-containing protein 1Chr12:36428558–36432835 (+)7.478e-11
Glyma.12G204400 hypothetical protein AT4G03560:TPC1:two-pore channel 1 1Chr12:36473422–36498915 (+)7.478e-11
Glyma.13G134300 hypothetical protein NA 1Chr13:24664171–24665742 (-)1.29e-11
Glyma.13G135300 hypothetical protein NA 1Chr13:24770681–24773826 (+)2.816e-11
Glyma.13G135400 hypothetical protein AT5G12130:PDE149:integral membrane TerC family protein 1Chr13:24786242–24791938 (+)2.816e-11
Glyma.13G135500 hypothetical protein AT5G02780:GSTL1:glutathione transferase lambda 1 1Chr13:24798567–24801567 (+)4.325e-13
Glyma.16G028100 hypothetical protein AT3G07570:AT3G07570:Cytochrome b561/ferric reductase transmembrane with DOMON related domain-containing protein 1Chr16:2725294–2733429 (-)5.074e-11
Glyma.16G062500 hypothetical protein NA 1Chr16:6099546–6105267 (-)8.063e-11
Glyma.16G064100 hypothetical protein NA 1Chr16:6322034–6325343 (-)4.962e-11
Glyma.17G251200 hypothetical protein NA 1Chr17:40605249–40607536 (+)4.182e-11
Glyma.20G120200 hypothetical protein NA 1Chr20:36268998–36282456 (-)9.225e-12
Glyma.20G217600 hypothetical protein NA 1Chr20:45339886–45344226 (+)3.124e-11
Glyma.20G217800 hypothetical protein AT1G32850:UBP11:ubiquitin-specific protease 11__AT4G10590:UBP10:ubiquitin-specific protease 10 1Chr20:45369972–45380130 (+)3.124e-11