Soybean mGWAS DBExplore The Genetic Basis Of Soybean Metabolism Glycine max
Overview Annotation GWAS Evidence Associated genes

P53128

Metabolite ID
P53128
Deionized mass
412.1929 Da
Average m/z
413.1993
Average RT
29.6708
Adduct
[M+H]+
Association scope
Overlapping genes only
Associated genes
42
GWAS result file
Available
Open in Soybean Metabolome Repository

Candidate annotations

Search compound candidates by deionized mass and tolerance. Follow compound IDs for database records, or use name searches to explore chemistry and soybean literature. About candidate annotations

GWAS Evidence

Dataset: indexed GWAS records.

Settings

SNP counts, plot highlights, gene associations and downloads use P < 10⁻¹⁰. Changing the threshold updates this page together.

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Associated genes

42 genes linked to SNP records with P < 10⁻¹⁰ in the selected scope. Supporting SNP records are counted per feature–gene pair.

Gene ID Alias Description Arabidopsis ortholog Supporting SNP recordsGene interval (1-based)Minimum P
Glyma.18G226300 hypothetical protein NA 10Chr18:51471540–51498344 (+)2.656e-13
Glyma.08G123500 hypothetical protein NA 2Chr08:9494946–9505931 (-)1.861e-12
Glyma.10G081700 hypothetical protein NA 2Chr10:9752508–9758422 (+)9.402e-14
Glyma.14G149300 hypothetical protein NA 2Chr14:32235308–32258014 (+)1.362e-11
Glyma.16G031600 hypothetical protein NA 2Chr16:2964569–2985013 (+)2.209e-13
Glyma.16G209300 hypothetical protein NA 2Chr16:36856833–36863994 (-)4.98e-12
Glyma.03G209700 hypothetical protein NA 1Chr03:41646792–41648527 (+)1.234e-12
Glyma.04G063900 hypothetical protein NA 1Chr04:5310107–5313853 (+)3.47e-12
Glyma.06G079400 hypothetical protein NA 1Chr06:6105463–6107101 (+)5.697e-11
Glyma.08G122200 hypothetical protein NA 1Chr08:9416766–9429995 (-)1.861e-12
Glyma.08G122300 hypothetical protein AT1G29390:COR314-TM2:cold regulated 314 thylakoid membrane 2 1Chr08:9435391–9437279 (+)1.861e-12
Glyma.08G122500 hypothetical protein NA 1Chr08:9441329–9445315 (-)1.861e-12
Glyma.08G122700 hypothetical protein AT1G29350:AT1G29350:RNA polymerase II degradation factor-like protein (DUF1296) 1Chr08:9452604–9458932 (+)1.861e-12
Glyma.08G210200 hypothetical protein NA 1Chr08:17010526–17012557 (+)1.427e-11
Glyma.08G210300 hypothetical protein NA 1Chr08:17011623–17012548 (-)1.427e-11
Glyma.08G211800 hypothetical protein NA 1Chr08:17104514–17105442 (-)2.761e-13
Glyma.09G282900 hypothetical protein AT2G29090:CYP707A2:cytochrome P450, family 707, subfamily A, polypeptide 2 1Chr09:49863377–49871270 (+)1.654e-11
Glyma.10G078700 hypothetical protein NA 1Chr10:8882318–8903950 (+)1.619e-11
Glyma.10G079100 hypothetical protein NA 1Chr10:8960669–8962364 (-)1.619e-11
Glyma.10G079800 hypothetical protein NA 1Chr10:9223520–9228511 (-)1.619e-11
Glyma.10G080000 hypothetical protein AT3G11660:NHL1:NDR1/HIN1-like 1__AT3G52470:AT3G52470:Late embryosis abundant (LEA) hydroxyproline-rich glycoprotein fam… 1Chr10:9258476–9260697 (-)1.619e-11
Glyma.10G081200 hypothetical protein NA 1Chr10:9600771–9603988 (-)7.431e-12
Glyma.11G064300 hypothetical protein AT4G36780:BEH2:BES1/BZR1 homolog 2 1Chr11:4849799–4851673 (+)1.877e-12
Glyma.13G156000 hypothetical protein AT2G07560:HA6:H[+]-ATPase 6__AT3G42640:HA8:H[+]-ATPase 8 1Chr13:27104338–27109785 (+)7.978e-11
Glyma.13G181100 hypothetical protein AT2G47960:AT2G47960:trafficking protein particle complex subunit-like protein 1Chr13:29426889–29433599 (-)2.187e-11
Glyma.14G093100 hypothetical protein NA 1Chr14:8654730–8655892 (-)9.572e-12
Glyma.14G148800 hypothetical protein AT1G44760:AT1G44760:Adenine nucleotide alpha hydrolases-like superfamily protein 1Chr14:32154755–32157298 (+)1.362e-11
Glyma.16G028100 hypothetical protein AT3G07570:AT3G07570:Cytochrome b561/ferric reductase transmembrane with DOMON related domain-containing protein 1Chr16:2725294–2733429 (-)5.175e-11
Glyma.16G146300 hypothetical protein NA 1Chr16:30714315–30716624 (+)5.161e-11
Glyma.16G146700 hypothetical protein NA 1Chr16:30755899–30759360 (-)5.161e-11
Glyma.16G208500 EIF6 AT3G55620:eIF6A:Translation initiation factor IF6 1Chr16:36806718–36809299 (+)7.7e-11
Glyma.16G210300 hypothetical protein AT1G73340:AT1G73340:Cytochrome P450 superfamily protein 1Chr16:36943073–36948828 (+)2.163e-11
Glyma.16G210400 hypothetical protein AT1G73350:AT1G73350:ankyrin repeat protein 1Chr16:36949685–36953467 (+)2.163e-11
Glyma.18G006800 hypothetical protein AT1G67370:ASY1:DNA-binding HORMA family protein 1Chr18:495989–502111 (-)2.469e-13
Glyma.18G045700 hypothetical protein NA 1Chr18:3956176–3958846 (+)3.807e-11
Glyma.18G226200 hypothetical protein AT4G00750:AT4G00750:S-adenosyl-L-methionine-dependent methyltransferases superfamily protein 1Chr18:51454812–51459765 (-)4.808e-11
Glyma.18G230700 hypothetical protein AT3G61290:AT3G61290:O-glucosyltransferase rumi-like protein (DUF821) 1Chr18:51943730–51947645 (+)2.517e-13
Glyma.18G231500 hypothetical protein NA 1Chr18:52019138–52019828 (-)2.408e-12
Glyma.20G022500 hypothetical protein NA 1Chr20:2342943–2353164 (+)6.011e-11
Glyma.20G107200 hypothetical protein AT4G38540:AT4G38540:FAD/NAD(P)-binding oxidoreductase family protein 1Chr20:34984922–34988496 (+)2.587e-11
Glyma.20G107500 hypothetical protein AT2G16910:AMS:basic helix-loop-helix (bHLH) DNA-binding superfamily protein 1Chr20:35011922–35015196 (-)4.025e-12
Glyma.20G109800 hypothetical protein AT2G35130:AT2G35130:Tetratricopeptide repeat (TPR)-like superfamily protein 1Chr20:35213258–35219502 (+)8.114e-11