Soybean mGWAS DBExplore The Genetic Basis Of Soybean Metabolism Glycine max
Overview Annotation GWAS Evidence Associated genes

P53116

Metabolite ID
P53116
Deionized mass
243.8782 Da
Average m/z
244.8856
Average RT
29.6537
Adduct
[M+H]+
Association scope
Overlapping genes only
Associated genes
142
GWAS result file
Available
Open in Soybean Metabolome Repository

Candidate annotations

Search compound candidates by deionized mass and tolerance. Follow compound IDs for database records, or use name searches to explore chemistry and soybean literature. About candidate annotations

GWAS Evidence

Dataset: indexed GWAS records.

Settings

SNP counts, plot highlights, gene associations and downloads use P < 10⁻¹⁰. Changing the threshold updates this page together.

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Associated genes

142 genes linked to SNP records with P < 10⁻¹⁰ in the selected scope. Supporting SNP records are counted per feature–gene pair.

Gene ID Alias Description Arabidopsis ortholog Supporting SNP recordsGene interval (1-based)Minimum P
Glyma.19G011800 hypothetical protein AT3G01420:DOX1:Peroxidase superfamily protein 4Chr19:1134716–1143232 (+)1.329e-12
Glyma.06G305700 hypothetical protein AT2G05710:ACO3:aconitase 3 3Chr06:49451501–49461369 (-)8.59e-11
Glyma.16G209300 hypothetical protein NA 3Chr16:36856833–36863994 (-)2.986e-12
Glyma.16G210200 hypothetical protein NA 3Chr16:36933402–36938940 (+)3.917e-11
Glyma.03G018800 hypothetical protein AT2G45680:TCP9:TCP family transcription factor 2Chr03:1875182–1876855 (+)2.512e-14
Glyma.03G019600 hypothetical protein AT2G45640:SAP18:SIN3 associated polypeptide P18 2Chr03:2007617–2009871 (+)7.378e-14
Glyma.07G069400 hypothetical protein AT2G46020:BRM:transcription regulatory protein SNF2 2Chr07:6270176–6283087 (-)8.335e-13
Glyma.09G282900 hypothetical protein AT2G29090:CYP707A2:cytochrome P450, family 707, subfamily A, polypeptide 2 2Chr09:49863377–49871270 (+)8.171e-13
Glyma.10G028700 hypothetical protein AT1G03090:MCCA:methylcrotonyl-CoA carboxylase alpha chain 2Chr10:2485817–2497071 (-)6.273e-14
Glyma.14G093100 hypothetical protein NA 2Chr14:8654730–8655892 (-)2.847e-15
Glyma.14G149300 hypothetical protein NA 2Chr14:32235308–32258014 (+)8.795e-16
Glyma.16G031600 hypothetical protein NA 2Chr16:2964569–2985013 (+)2.802e-11
Glyma.17G216700 hypothetical protein AT4G31930:AT4G31930:Mitochondrial glycoprotein family protein 2Chr17:36510062–36519347 (+)2.698e-13
Glyma.19G011700 hypothetical protein AT3G01420:DOX1:Peroxidase superfamily protein 2Chr19:1123637–1130946 (+)1.707e-12
Glyma.19G011900 hypothetical protein AT3G28140:AT3G28140:RNA ligase/cyclic nucleotide phosphodiesterase family protein__AT5G40190:AT5G40190:RNA ligase/cycli… 2Chr19:1148510–1149495 (+)8.455e-12
Glyma.20G107200 hypothetical protein AT4G38540:AT4G38540:FAD/NAD(P)-binding oxidoreductase family protein 2Chr20:34984922–34988496 (+)5.986e-11
Glyma.01G034300 hypothetical protein NA 1Chr01:3573149–3579461 (-)8.425e-13
Glyma.01G034700 hypothetical protein NA 1Chr01:3599923–3602578 (-)4.495e-12
Glyma.01G037200 hypothetical protein NA 1Chr01:3946315–3948100 (-)7.45e-11
Glyma.02G133800 hypothetical protein AT1G49660:CXE5:carboxyesterase 5 1Chr02:13850366–13851962 (-)1.881e-11
Glyma.02G193800 hypothetical protein AT5G06470:AT5G06470:Glutaredoxin family protein 1Chr02:36706657–36712744 (-)2.384e-11
Glyma.03G016700 hypothetical protein AT4G00740:QUA3:S-adenosyl-L-methionine-dependent methyltransferases superfamily protein 1Chr03:1683395–1688893 (-)4.013e-11
Glyma.03G017800 hypothetical protein AT4G00770:TRM9:DUF4378 domain protein 1Chr03:1780719–1783735 (+)9.499e-12
Glyma.03G018600 hypothetical protein AT2G45695:AT2G45695:Ubiquitin related modifier 1 1Chr03:1859210–1862572 (-)7.55e-15
Glyma.03G019700 hypothetical protein AT3G61130:GAUT1:galacturonosyltransferase 1 1Chr03:2010835–2018418 (+)1.953e-14
Glyma.03G021700 hypothetical protein AT2G45490:AUR3:ataurora3 1Chr03:2248429–2251737 (+)1.386e-12
Glyma.03G022100 hypothetical protein AT4G32430:AT4G32430:Pentatricopeptide repeat (PPR) superfamily protein 1Chr03:2301675–2307263 (+)7.115e-14
Glyma.03G023000 hypothetical protein AT4G00220:JLO:Lateral organ boundaries (LOB) domain family protein 1Chr03:2423540–2428634 (-)4.585e-12
Glyma.03G135200 hypothetical protein NA 1Chr03:35070964–35078620 (+)5.699e-11
Glyma.03G177700 hypothetical protein NA 1Chr03:39046772–39051158 (+)1.71e-14
Glyma.03G209700 hypothetical protein NA 1Chr03:41646792–41648527 (+)9.616e-12
Glyma.05G127500 hypothetical protein NA 1Chr05:32041345–32049554 (+)2.478e-11
Glyma.05G127800 hypothetical protein AT4G18240:SS4:starch synthase 4 1Chr05:32125404–32138244 (+)3.959e-11
Glyma.05G127900 SAD1 AT5G48870:SAD1:Small nuclear ribonucleoprotein family protein 1Chr05:32139620–32141770 (-)3.959e-11
Glyma.05G128200 hypothetical protein AT5G46330:FLS2:Leucine-rich receptor-like protein kinase family protein 1Chr05:32158034–32162343 (-)3.959e-11
Glyma.05G219200 hypothetical protein NA 1Chr05:39875137–39879113 (-)8.817e-14
Glyma.05G224700 hypothetical protein NA 1Chr05:40351005–40361888 (+)1.669e-11
Glyma.05G226000 hypothetical protein AT5G19730:AT5G19730:Pectin lyase-like superfamily protein 1Chr05:40458098–40461736 (+)2.287e-11
Glyma.05G236400 hypothetical protein AT1G23210:GH9B6:glycosyl hydrolase 9B6__AT1G70710:GH9B1:glycosyl hydrolase 9B1 1Chr05:41274513–41279615 (-)3.931e-13
Glyma.05G236700 hypothetical protein AT4G33760:AT4G33760:tRNA synthetase class II (D, K and N) family protein 1Chr05:41301540–41310727 (+)1.211e-13
Glyma.05G237800 hypothetical protein AT1G48790:AMSH1:associated molecule with the SH3 domain of STAM 1 1Chr05:41406807–41413022 (-)1.424e-16
Glyma.06G084800 hypothetical protein NA 1Chr06:6515571–6517480 (-)8.847e-14
Glyma.06G085000 hypothetical protein NA 1Chr06:6524339–6529016 (-)8.847e-14
Glyma.06G085100 hypothetical protein NA 1Chr06:6531956–6537295 (-)8.847e-14
Glyma.06G085200 hypothetical protein NA 1Chr06:6540849–6545557 (+)4.962e-13
Glyma.06G125200 hypothetical protein AT4G27940:MTM1:manganese tracking factor for mitochondrial SOD2 1Chr06:10209787–10215982 (+)1.126e-11
Glyma.06G125300 hypothetical protein AT5G24105:AGP41:arabinogalactan protein 41 1Chr06:10216506–10218901 (-)1.126e-11
Glyma.06G126500 hypothetical protein AT5G04070:AT5G04070:NAD(P)-binding Rossmann-fold superfamily protein 1Chr06:10367536–10373426 (-)1.837e-12
Glyma.06G126900 hypothetical protein AT5G04520:AT5G04520:3-oxoacyl-acyl-carrier synthase-like protein (Protein of unknown function DUF455) 1Chr06:10403126–10408307 (-)2.475e-11
Glyma.06G200200 hypothetical protein NA 1Chr06:18327920–18331068 (-)2.643e-13
Glyma.06G201700 hypothetical protein NA 1Chr06:18577883–18617874 (+)7.368e-11
Glyma.06G209300 hypothetical protein NA 1Chr06:20573671–20581076 (-)9.697e-11
Glyma.06G303300 hypothetical protein NA 1Chr06:49275774–49276891 (+)5.699e-11
Glyma.06G303700 hypothetical protein AT1G05230:HDG2:homeodomain GLABROUS 2 1Chr06:49315918–49324382 (+)4.349e-12
Glyma.06G303800 hypothetical protein AT1G05220:AT1G05220:Transmembrane protein 97, Putative__AT2G32380:AT2G32380:Transmembrane protein 97, Putative 1Chr06:49328417–49330906 (-)4.349e-12
Glyma.06G305300 hypothetical protein NA 1Chr06:49431590–49435985 (-)8.59e-11
Glyma.06G305600 hypothetical protein NA 1Chr06:49446542–49450635 (-)8.59e-11
Glyma.07G015700 hypothetical protein AT1G79750:NADP-ME4:NADP-malic enzyme 4 1Chr07:1244977–1251198 (-)1.978e-13
Glyma.07G068000 hypothetical protein AT3G61460:BRH1: 1Chr07:6128862–6129740 (+)8.012e-11
Glyma.07G068300 hypothetical protein AT5G62980:FOLB2:Dihydroneopterin aldolase__AT3G11750:FOLB1:Dihydroneopterin aldolase 1Chr07:6169729–6172231 (+)5.185e-11
Glyma.07G068400 hypothetical protein AT1G29320:AT1G29320:Transducin/WD40 repeat-like superfamily protein 1Chr07:6173172–6180430 (-)2.016e-11
Glyma.07G068600 hypothetical protein NA 1Chr07:6192764–6197166 (+)2.016e-11
Glyma.07G068700 hypothetical protein AT2G46060:AT2G46060:transmembrane protein-like protein 1Chr07:6200187–6208590 (+)1.131e-11
Glyma.07G068800 hypothetical protein NA 1Chr07:6211775–6221107 (-)1.131e-11
Glyma.07G069100 hypothetical protein NA 1Chr07:6246145–6250192 (+)2.016e-11
Glyma.07G069600 hypothetical protein AT4G00370:ANTR2:Major facilitator superfamily protein 1Chr07:6307073–6313498 (-)1.793e-13
Glyma.07G071800 hypothetical protein AT4G20960:PyrD:Cytidine/deoxycytidylate deaminase family protein 1Chr07:6523253–6526707 (+)2.105e-11
Glyma.07G073100 hypothetical protein NA 1Chr07:6656839–6661250 (-)4.58e-11
Glyma.07G078300 hypothetical protein NA 1Chr07:7150800–7154478 (-)1.551e-11
Glyma.07G091400 COL21 CONSTANS-like zinc finger protein AT1G25440:BBX15:B-box type zinc finger protein with CCT domain-containing protein 1Chr07:8539101–8547001 (+)2.173e-11
Glyma.07G100400 hypothetical protein AT3G18050:AT3G18050:GPI-anchored protein 1Chr07:9523110–9526319 (+)7.219e-12
Glyma.08G112600 hypothetical protein NA 1Chr08:8660670–8663379 (-)1.357e-11
Glyma.08G112700 hypothetical protein NA 1Chr08:8661027–8661191 (+)1.357e-11
Glyma.08G139300 hypothetical protein AT2G22125:CSI1:binding protein 1Chr08:10653279–10664544 (-)5.159e-11
Glyma.08G210200 hypothetical protein NA 1Chr08:17010526–17012557 (+)7.992e-11
Glyma.08G210300 hypothetical protein NA 1Chr08:17011623–17012548 (-)7.992e-11
Glyma.08G211800 hypothetical protein NA 1Chr08:17104514–17105442 (-)1.793e-12
Glyma.08G294800 hypothetical protein AT1G59710:AT1G59710:actin cross-linking protein (DUF569) 1Chr08:40993962–41001629 (+)6.252e-11
Glyma.08G294900 hypothetical protein AT1G59720:CRR28:Tetratricopeptide repeat (TPR)-like superfamily protein 1Chr08:41002768–41005138 (-)5.642e-11
Glyma.08G296900 hypothetical protein NA 1Chr08:41297891–41301852 (+)9.506e-14
Glyma.09G052700 hypothetical protein AT1G31120:KUP10:K+ uptake permease 10 1Chr09:4617652–4626364 (+)3.658e-11
Glyma.09G082000 hypothetical protein NA 1Chr09:9638564–9650178 (+)2.545e-11
Glyma.09G202900 hypothetical protein AT5G10560:AT5G10560:Glycosyl hydrolase family protein 1Chr09:42685911–42690981 (-)1.695e-11
Glyma.09G237900 hypothetical protein NA 1Chr09:45960580–45964267 (+)1.674e-12
Glyma.09G238200 NIP2-1 putative Si transporter NIP2-1 NA 1Chr09:46029192–46034136 (+)7.721e-11
Glyma.10G028500 hypothetical protein NA 1Chr10:2476846–2478953 (+)6.273e-14
Glyma.10G028600 hypothetical protein NA 1Chr10:2487313–2489838 (+)9.121e-11
Glyma.10G078700 hypothetical protein NA 1Chr10:8882318–8903950 (+)2.234e-11
Glyma.10G079100 hypothetical protein NA 1Chr10:8960669–8962364 (-)2.234e-11
Glyma.10G079800 hypothetical protein NA 1Chr10:9223520–9228511 (-)2.233e-11
Glyma.10G080000 hypothetical protein AT3G11660:NHL1:NDR1/HIN1-like 1__AT3G52470:AT3G52470:Late embryosis abundant (LEA) hydroxyproline-rich glycoprotein fam… 1Chr10:9258476–9260697 (-)2.233e-11
Glyma.10G081200 hypothetical protein NA 1Chr10:9600771–9603988 (-)1.117e-11
Glyma.10G081700 hypothetical protein NA 1Chr10:9752508–9758422 (+)2.373e-13
Glyma.10G263800 hypothetical protein AT1G23010:LPR1:Cupredoxin superfamily protein 1Chr10:48805999–48811533 (-)7.886e-11
Glyma.11G049700 hypothetical protein NA 1Chr11:3731308–3734534 (+)9.096e-11
Glyma.11G050300 hypothetical protein AT2G23093:AT2G23093:Major facilitator superfamily protein 1Chr11:3765453–3771565 (+)2.045e-11
Glyma.11G050500 hypothetical protein AT5G67370:CGLD27:DUF1230 family protein (DUF1230) 1Chr11:3778152–3782174 (+)2.045e-11
Glyma.11G050600 hypothetical protein NA 1Chr11:3779988–3786583 (-)2.045e-11
Glyma.11G051600 hypothetical protein NA 1Chr11:3857225–3859564 (-)2.045e-11
Glyma.12G114500 hypothetical protein AT4G22930:PYR4:pyrimidin 4 1Chr12:11396572–11400825 (-)2.017e-16
Glyma.12G114900 hypothetical protein NA 1Chr12:11457987–11462951 (-)2.017e-16
Glyma.13G135500 hypothetical protein AT5G02780:GSTL1:glutathione transferase lambda 1 1Chr13:24798567–24801567 (+)7.183e-11
Glyma.13G135700 hypothetical protein NA 1Chr13:24812720–24818735 (+)7.183e-11
Glyma.13G135800 hypothetical protein AT5G02800:CDL1:Protein kinase superfamily protein 1Chr13:24820151–24823999 (-)7.183e-11
Glyma.13G156000 hypothetical protein AT2G07560:HA6:H[+]-ATPase 6__AT3G42640:HA8:H[+]-ATPase 8 1Chr13:27104338–27109785 (+)2.244e-11
Glyma.14G067800 hypothetical protein AT3G12380:ARP5:actin-related protein 5 1Chr14:5675792–5680343 (+)7.4e-11
Glyma.14G068500 hypothetical protein NA 1Chr14:5741909–5745574 (-)8.293e-13
Glyma.14G069500 hypothetical protein AT5G37810:NIP4;1:NOD26-like intrinsic protein 4;1 1Chr14:5822246–5825628 (-)2.57e-13
Glyma.14G087900 hypothetical protein NA 1Chr14:7887761–7897469 (+)2.931e-11
Glyma.14G094900 hypothetical protein AT1G60960:IRT3:iron regulated transporter 3 1Chr14:8824846–8827258 (-)1.237e-15
Glyma.14G148800 hypothetical protein AT1G44760:AT1G44760:Adenine nucleotide alpha hydrolases-like superfamily protein 1Chr14:32154755–32157298 (+)8.795e-16
Glyma.14G201600 hypothetical protein NA 1Chr14:46703283–46706500 (+)6.738e-11
Glyma.14G201700 hypothetical protein NA 1Chr14:46711634–46715644 (-)6.738e-11
Glyma.14G201800 hypothetical protein AT5G58390:AT5G58390:Peroxidase superfamily protein 1Chr14:46728613–46733836 (+)2.568e-13
Glyma.15G009800 hypothetical protein NA 1Chr15:753771–758859 (-)5.079e-11
Glyma.15G124000 hypothetical protein NA 1Chr15:9845097–9849312 (-)4.929e-17
Glyma.15G124500 MLO-like protein 13 AT4G24250:MLO13:Seven transmembrane MLO family protein 1Chr15:9888761–9894068 (-)4.272e-14
Glyma.16G117400 hypothetical protein NA 1Chr16:26234552–26238233 (-)2.337e-11
Glyma.16G118100 hypothetical protein AT2G17570:cPT1:Undecaprenyl pyrophosphate synthetase family protein 1Chr16:26324650–26336836 (+)2.239e-11
Glyma.16G119300 hypothetical protein NA 1Chr16:26643902–26644416 (+)2.419e-11
Glyma.16G179800 hypothetical protein AT5G52520:OVA6:Class II aaRS and biotin synthetases superfamily protein 1Chr16:34022480–34027055 (-)6.913e-11
Glyma.16G182600 hypothetical protein AT5G52400:CYP715A1:cytochrome P450, family 715, subfamily A, polypeptide 1 1Chr16:34364037–34367765 (-)5.528e-12
Glyma.16G189100 hypothetical protein AT1G05190:emb2394:Ribosomal protein L6 family 1Chr16:35170253–35173950 (-)7.492e-11
Glyma.16G196200 HSF-32 heat stress transcription factor 32 AT5G62020:HSFB2A:heat shock transcription factor B2A 1Chr16:35760178–35761852 (+)5.922e-11
Glyma.16G196400 hypothetical protein AT5G07270:XBAT33:uncharacterized protein 1Chr16:35782198–35790495 (-)1.664e-11
Glyma.16G196900 hypothetical protein NA 1Chr16:35841279–35846894 (-)1.123e-11
Glyma.16G208500 EIF6 AT3G55620:eIF6A:Translation initiation factor IF6 1Chr16:36806718–36809299 (+)4.737e-12
Glyma.16G209900 hypothetical protein NA 1Chr16:36919141–36924601 (+)3.917e-11
Glyma.16G210300 hypothetical protein AT1G73340:AT1G73340:Cytochrome P450 superfamily protein 1Chr16:36943073–36948828 (+)1.216e-12
Glyma.16G210400 hypothetical protein AT1G73350:AT1G73350:ankyrin repeat protein 1Chr16:36949685–36953467 (+)1.216e-12
Glyma.17G038400 hypothetical protein AT3G17330:ECT6:evolutionarily conserved C-terminal region 6 1Chr17:2836787–2841979 (-)9.819e-11
Glyma.17G038500 hypothetical protein NA 1Chr17:2843533–2853547 (-)9.819e-11
Glyma.17G215500 KNAT5 NA 1Chr17:36212363–36217688 (-)1.408e-12
Glyma.18G091600 hypothetical protein NA 1Chr18:9165090–9166656 (-)5.483e-11
Glyma.18G231300 hypothetical protein AT3G61310:AT3G61310:AT hook motif DNA-binding family protein 1Chr18:51979095–51987062 (-)7.953e-11
Glyma.18G231500 hypothetical protein NA 1Chr18:52019138–52019828 (-)3.598e-12
Glyma.19G011600 hypothetical protein NA 1Chr19:1111789–1116419 (+)2.328e-11
Glyma.19G012100 hypothetical protein AT3G28150:TBL22:TRICHOME BIREFRINGENCE-LIKE 22 1Chr19:1155711–1161298 (-)4.056e-12
Glyma.19G012300 hypothetical protein NA 1Chr19:1165111–1173031 (-)4.056e-12
Glyma.20G107500 hypothetical protein AT2G16910:AMS:basic helix-loop-helix (bHLH) DNA-binding superfamily protein 1Chr20:35011922–35015196 (-)1.282e-12
Glyma.20G109000 hypothetical protein AT4G32640:AT4G32640:Sec23/Sec24 protein transport family protein__AT3G44340:CEF:uncharacterized protein 1Chr20:35134138–35152085 (-)1.304e-11
Glyma.20G110000 hypothetical protein AT3G54260:TBL36:TRICHOME BIREFRINGENCE-LIKE 36 1Chr20:35229423–35231861 (+)6.15e-12