Soybean mGWAS DBExplore The Genetic Basis Of Soybean Metabolism Glycine max
Overview Annotation GWAS Evidence Associated genes

P52902

Metabolite ID
P52902
Deionized mass
309.1304 Da
Average m/z
310.1358
Average RT
29.3364
Adduct
[M+H]+
Association scope
Overlapping genes only
Associated genes
119
GWAS result file
Available
Open in Soybean Metabolome Repository

Candidate annotations

Search compound candidates by deionized mass and tolerance. Follow compound IDs for database records, or use name searches to explore chemistry and soybean literature. About candidate annotations

GWAS Evidence

Dataset: indexed GWAS records.

Settings

SNP counts, plot highlights, gene associations and downloads use P < 10⁻¹⁰. Changing the threshold updates this page together.

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Associated genes

119 genes linked to SNP records with P < 10⁻¹⁰ in the selected scope. Supporting SNP records are counted per feature–gene pair.

Gene ID Alias Description Arabidopsis ortholog Supporting SNP recordsGene interval (1-based)Minimum P
Glyma.16G209300 hypothetical protein NA 5Chr16:36856833–36863994 (-)2.452e-16
Glyma.06G305700 hypothetical protein AT2G05710:ACO3:aconitase 3 3Chr06:49451501–49461369 (-)2.305e-11
Glyma.13G134400 hypothetical protein AT2G37370:AT2G37370:centrosomal protein of 135 kDa-like protein 3Chr13:24677399–24693129 (-)6.037e-11
Glyma.16G147900 hypothetical protein NA 3Chr16:30864919–30872425 (+)1.312e-11
Glyma.16G210200 hypothetical protein NA 3Chr16:36933402–36938940 (+)2.506e-11
Glyma.05G164700 hypothetical protein NA 2Chr05:35543931–35549196 (-)2.888e-11
Glyma.12G203700 hypothetical protein AT4G28260:AT4G28260:acyl-UDP-N-acetylglucosamine O-acyltransferase 2Chr12:36406747–36413696 (+)9.034e-12
Glyma.13G135700 hypothetical protein NA 2Chr13:24812720–24818735 (+)7.371e-14
Glyma.13G135800 hypothetical protein AT5G02800:CDL1:Protein kinase superfamily protein 2Chr13:24820151–24823999 (-)7.371e-14
Glyma.16G144200 hypothetical protein AT3G50380:AT3G50380:vacuolar protein sorting-associated protein, putative (DUF1162) 2Chr16:30434508–30475458 (-)2.773e-12
Glyma.16G209400 hypothetical protein AT1G17840:ABCG11:white-brown complex-like protein 2Chr16:36871978–36878151 (-)8.669e-12
Glyma.17G215800 Aberrant root formation protein 4 AT5G11030:ALF4:aberrant root formation protein 2Chr17:36328551–36338097 (+)9.944e-11
Glyma.01G169700 hypothetical protein AT4G36410:UBC17:ubiquitin-conjugating enzyme 17 1Chr01:50715084–50719427 (-)2.277e-11
Glyma.01G169800 hypothetical protein AT4G36400:D2HGDH:FAD-linked oxidases family protein 1Chr01:50726088–50733347 (-)2.277e-11
Glyma.03G021700 hypothetical protein AT2G45490:AUR3:ataurora3 1Chr03:2248429–2251737 (+)4.452e-11
Glyma.03G022100 hypothetical protein AT4G32430:AT4G32430:Pentatricopeptide repeat (PPR) superfamily protein 1Chr03:2301675–2307263 (+)2.27e-12
Glyma.03G023000 hypothetical protein AT4G00220:JLO:Lateral organ boundaries (LOB) domain family protein 1Chr03:2423540–2428634 (-)3.028e-17
Glyma.03G177700 hypothetical protein NA 1Chr03:39046772–39051158 (+)4.351e-12
Glyma.03G209700 hypothetical protein NA 1Chr03:41646792–41648527 (+)1.83e-12
Glyma.05G124700 hypothetical protein NA 1Chr05:31807311–31817648 (+)6.892e-14
Glyma.05G126400 hypothetical protein NA 1Chr05:31961493–31968339 (+)1.786e-11
Glyma.05G127500 hypothetical protein NA 1Chr05:32041345–32049554 (+)1.624e-11
Glyma.05G127800 hypothetical protein AT4G18240:SS4:starch synthase 4 1Chr05:32125404–32138244 (+)2.888e-11
Glyma.05G127900 SAD1 AT5G48870:SAD1:Small nuclear ribonucleoprotein family protein 1Chr05:32139620–32141770 (-)2.888e-11
Glyma.05G128200 hypothetical protein AT5G46330:FLS2:Leucine-rich receptor-like protein kinase family protein 1Chr05:32158034–32162343 (-)2.888e-11
Glyma.05G137500 hypothetical protein NA 1Chr05:33012282–33015297 (-)3.717e-11
Glyma.05G137600 hypothetical protein NA 1Chr05:33018107–33020120 (-)4.891e-11
Glyma.05G236400 hypothetical protein AT1G23210:GH9B6:glycosyl hydrolase 9B6__AT1G70710:GH9B1:glycosyl hydrolase 9B1 1Chr05:41274513–41279615 (-)3.661e-11
Glyma.05G236700 hypothetical protein AT4G33760:AT4G33760:tRNA synthetase class II (D, K and N) family protein 1Chr05:41301540–41310727 (+)1.281e-11
Glyma.06G085200 hypothetical protein NA 1Chr06:6540849–6545557 (+)8.352e-11
Glyma.06G112300 hypothetical protein AT1G44780:AT1G44780:translation initiation factor__AT4G08310:AT4G08310:DNA ligase 1Chr06:9113982–9118848 (-)4.374e-13
Glyma.06G112600 hypothetical protein AT1G77620:AT1G77620:P-loop containing nucleoside triphosphate hydrolases superfamily protein 1Chr06:9134358–9144986 (+)4.374e-13
Glyma.06G112700 hypothetical protein AT1G44760:AT1G44760:Adenine nucleotide alpha hydrolases-like superfamily protein 1Chr06:9156973–9158659 (+)4.374e-13
Glyma.06G118500 hypothetical protein NA 1Chr06:9644661–9650144 (-)1.728e-13
Glyma.06G118800 hypothetical protein NA 1Chr06:9666921–9667708 (+)1.728e-13
Glyma.06G125200 hypothetical protein AT4G27940:MTM1:manganese tracking factor for mitochondrial SOD2 1Chr06:10209787–10215982 (+)2.622e-13
Glyma.06G125300 hypothetical protein AT5G24105:AGP41:arabinogalactan protein 41 1Chr06:10216506–10218901 (-)2.622e-13
Glyma.06G126500 hypothetical protein AT5G04070:AT5G04070:NAD(P)-binding Rossmann-fold superfamily protein 1Chr06:10367536–10373426 (-)3.344e-11
Glyma.06G291800 hypothetical protein NA 1Chr06:48044194–48047197 (-)5.684e-11
Glyma.06G292200 hypothetical protein AT5G44290:AT5G44290:Protein kinase superfamily protein 1Chr06:48100578–48107433 (-)5.684e-11
Glyma.06G305300 hypothetical protein NA 1Chr06:49431590–49435985 (-)2.305e-11
Glyma.06G305600 hypothetical protein NA 1Chr06:49446542–49450635 (-)2.305e-11
Glyma.07G013400 hypothetical protein AT3G21310:AT3G21310:Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein 1Chr07:1028243–1033837 (-)6.494e-11
Glyma.07G013500 hypothetical protein NA 1Chr07:1036819–1041984 (-)6.494e-11
Glyma.08G016700 hypothetical protein AT1G63840:AT1G63840:RING/U-box superfamily protein 1Chr08:1330226–1331366 (-)3.285e-12
Glyma.08G122000 hypothetical protein AT5G46400:PRP39-2:Tetratricopeptide repeat (TPR)-like superfamily protein 1Chr08:9397717–9410004 (+)4.675e-12
Glyma.09G016500 hypothetical protein NA 1Chr09:1274652–1276853 (-)9.527e-12
Glyma.09G016800 hypothetical protein NA 1Chr09:1300913–1311894 (+)1.441e-11
Glyma.09G058900 hypothetical protein NA 1Chr09:5397968–5404650 (-)1.619e-12
Glyma.09G253800 hypothetical protein NA 1Chr09:47356240–47357763 (-)8.69e-11
Glyma.09G253900 hypothetical protein NA 1Chr09:47359742–47364806 (-)8.69e-11
Glyma.10G081700 hypothetical protein NA 1Chr10:9752508–9758422 (+)5.54e-11
Glyma.11G095100 hypothetical protein NA 1Chr11:7212438–7214276 (-)1.17e-11
Glyma.11G125600 hypothetical protein AT2G46200:AT2G46200:U11/U12 small nuclear ribonucleoprotein 1Chr11:9540747–9545520 (-)3.021e-11
Glyma.11G127100 hypothetical protein AT1G06040:STO:B-box zinc finger family protein 1Chr11:9656242–9659517 (+)7.766e-13
Glyma.11G127200 hypothetical protein AT3G59480:AT3G59480:pfkB-like carbohydrate kinase family protein 1Chr11:9660434–9665570 (-)7.766e-13
Glyma.11G127300 hypothetical protein AT2G28480:AT2G28480:RNA-binding CRS1 / YhbY (CRM) domain protein 1Chr11:9667918–9671917 (-)7.766e-13
Glyma.12G108600 hypothetical protein NA 1Chr12:9994609–9997302 (-)1.012e-12
Glyma.12G109500 hypothetical protein AT4G03415:PP2C52:Protein phosphatase 2C family protein 1Chr12:10308026–10314332 (-)1.012e-12
Glyma.12G186200 hypothetical protein AT3G44350:NAC061:NAC domain containing protein 61 1Chr12:34708678–34710549 (+)3.673e-11
Glyma.12G202200 hypothetical protein AT2G20860:LIP1:lipoic acid synthase 1 1Chr12:36267599–36271584 (+)3.342e-13
Glyma.12G202300 hypothetical protein NA 1Chr12:36275438–36276838 (+)3.342e-13
Glyma.12G202400 hypothetical protein AT4G03415:PP2C52:Protein phosphatase 2C family protein 1Chr12:36289704–36295084 (-)4.272e-11
Glyma.12G203600 EXPB8 AT2G20750:EXPB1:expansin B1 1Chr12:36390283–36394245 (-)7.199e-12
Glyma.12G204000 hypothetical protein AT1G03687:AT1G03687:DTW domain-containing protein 1Chr12:36428558–36432835 (+)2.769e-11
Glyma.12G204400 hypothetical protein AT4G03560:TPC1:two-pore channel 1 1Chr12:36473422–36498915 (+)2.769e-11
Glyma.13G095000 hypothetical protein NA 1Chr13:21005327–21006774 (-)5.162e-11
Glyma.13G134300 hypothetical protein NA 1Chr13:24664171–24665742 (-)6.037e-11
Glyma.13G134500 hypothetical protein AT3G09560:PAH1:Lipin family protein 1Chr13:24696109–24705068 (-)6.446e-11
Glyma.13G135300 hypothetical protein NA 1Chr13:24770681–24773826 (+)7.371e-14
Glyma.13G135400 hypothetical protein AT5G12130:PDE149:integral membrane TerC family protein 1Chr13:24786242–24791938 (+)7.371e-14
Glyma.13G135500 hypothetical protein AT5G02780:GSTL1:glutathione transferase lambda 1 1Chr13:24798567–24801567 (+)4.432e-13
Glyma.13G136500 hypothetical protein NA 1Chr13:24910198–24916336 (-)1.309e-11
Glyma.13G138300 hypothetical protein AT2G37130:AT2G37130:Peroxidase superfamily protein 1Chr13:25095882–25099473 (-)3.674e-11
Glyma.14G044000 hypothetical protein AT5G62290:AT5G62290:nucleotide-sensitive chloride conductance regulator (ICln) family protein 1Chr14:3343611–3346483 (+)9.154e-11
Glyma.14G066800 hypothetical protein NA 1Chr14:5511222–5513114 (+)2.3e-12
Glyma.14G198600 hypothetical protein NA 1Chr14:46360801–46362778 (+)7.056e-11
Glyma.14G198800 hypothetical protein AT1G07030:AT1G07030:Mitochondrial substrate carrier family protein 1Chr14:46375963–46379746 (-)7.056e-11
Glyma.15G121100 hypothetical protein NA 1Chr15:9567797–9570248 (+)3.521e-15
Glyma.15G121300 hypothetical protein AT5G47760:PGLP2:2-phosphoglycolate phosphatase 2 1Chr15:9584685–9590201 (-)2.909e-15
Glyma.15G121500 hypothetical protein AT1G03370:AT1G03370:C2 calcium/lipid-binding and GRAM domain containing protein 1Chr15:9602794–9615281 (+)3.521e-15
Glyma.15G121800 hypothetical protein NA 1Chr15:9643746–9648073 (+)3.521e-15
Glyma.15G124000 hypothetical protein NA 1Chr15:9845097–9849312 (-)6.199e-14
Glyma.15G124500 MLO-like protein 13 AT4G24250:MLO13:Seven transmembrane MLO family protein 1Chr15:9888761–9894068 (-)5.965e-15
Glyma.16G020200 hypothetical protein NA 1Chr16:1828561–1835982 (-)7.67e-11
Glyma.16G024800 hypothetical protein AT4G31010:AT4G31010:RNA-binding CRS1 / YhbY (CRM) domain-containing protein 1Chr16:2407161–2410997 (-)9.114e-11
Glyma.16G025300 hypothetical protein NA 1Chr16:2438122–2440528 (-)4.25e-14
Glyma.16G025400 hypothetical protein AT2G46430:CNGC3:cyclic nucleotide gated channel 3 1Chr16:2443212–2450834 (-)4.25e-14
Glyma.16G050500 AFB3B auxin signaling F-box 3 protein AT3G26810:AFB2:auxin signaling F-box 2 1Chr16:4853237–4856710 (+)5.286e-11
Glyma.16G139000 hypothetical protein NA 1Chr16:29623540–29631451 (+)9.536e-12
Glyma.16G139500 hypothetical protein AT5G66550:AT5G66550:Maf-like protein 1Chr16:29686243–29690410 (-)5.196e-11
Glyma.16G142300 hypothetical protein AT4G36850:AT4G36850:PQ-loop repeat family protein / transmembrane family protein 1Chr16:30086178–30091466 (-)2.395e-11
Glyma.16G144300 hypothetical protein NA 1Chr16:30443185–30446450 (+)2.773e-12
Glyma.16G145100 hypothetical protein NA 1Chr16:30578388–30581421 (-)6.847e-13
Glyma.16G145200 hypothetical protein NA 1Chr16:30586018–30588859 (-)5.312e-13
Glyma.16G145600 hypothetical protein AT1G11310:MLO2:Seven transmembrane MLO family protein__AT2G39200:MLO12:Seven transmembrane MLO family protein__AT1G6156… 1Chr16:30652378–30659548 (+)6.847e-13
Glyma.16G147000 hypothetical protein NA 1Chr16:30773803–30777822 (-)2.594e-11
Glyma.16G179800 hypothetical protein AT5G52520:OVA6:Class II aaRS and biotin synthetases superfamily protein 1Chr16:34022480–34027055 (-)3.17e-12
Glyma.16G182600 hypothetical protein AT5G52400:CYP715A1:cytochrome P450, family 715, subfamily A, polypeptide 1 1Chr16:34364037–34367765 (-)4.496e-11
Glyma.16G196200 HSF-32 heat stress transcription factor 32 AT5G62020:HSFB2A:heat shock transcription factor B2A 1Chr16:35760178–35761852 (+)3.367e-11
Glyma.16G207900 hypothetical protein AT5G08450:AT5G08450:zinc finger CCCH domain protein 1Chr16:36754888–36763450 (+)2.37e-13
Glyma.16G208500 EIF6 AT3G55620:eIF6A:Translation initiation factor IF6 1Chr16:36806718–36809299 (+)2.494e-11
Glyma.16G209000 hypothetical protein NA 1Chr16:36841786–36845498 (-)5.475e-13
Glyma.16G209900 hypothetical protein NA 1Chr16:36919141–36924601 (+)2.506e-11
Glyma.16G210300 hypothetical protein AT1G73340:AT1G73340:Cytochrome P450 superfamily protein 1Chr16:36943073–36948828 (+)5.102e-13
Glyma.16G210400 hypothetical protein AT1G73350:AT1G73350:ankyrin repeat protein 1Chr16:36949685–36953467 (+)5.102e-13
Glyma.17G064000 hypothetical protein AT2G18840:AT2G18840:Integral membrane Yip1 family protein__AT4G30260:AT4G30260:Integral membrane Yip1 family protein 1Chr17:4924830–4930155 (-)2.202e-12
Glyma.17G064200 hypothetical protein AT5G57500:AT5G57500:Galactosyltransferase family protein 1Chr17:4943412–4944357 (-)2.202e-12
Glyma.17G215500 KNAT5 NA 1Chr17:36212363–36217688 (-)7.478e-12
Glyma.17G215700 hypothetical protein AT5G11040:TRS120:TRS120 1Chr17:36319785–36329259 (-)9.944e-11
Glyma.18G230700 hypothetical protein AT3G61290:AT3G61290:O-glucosyltransferase rumi-like protein (DUF821) 1Chr18:51943730–51947645 (+)9.811e-11
Glyma.18G251900 hypothetical protein AT3G60320:AT3G60320:bZIP domain class transcription factor (DUF630 and DUF632)__AT1G02110:AT1G02110:bZIP domain class t… 1Chr18:53855786–53862322 (-)4.409e-13
Glyma.18G263900 hypothetical protein AT5G15410:DND1:Cyclic nucleotide-regulated ion channel family protein 1Chr18:54907058–54912936 (-)1.195e-11
Glyma.18G266100 hypothetical protein NA 1Chr18:55052591–55056489 (-)8.635e-12
Glyma.18G266500 hypothetical protein NA 1Chr18:55088284–55091427 (-)4.236e-12
Glyma.19G012100 hypothetical protein AT3G28150:TBL22:TRICHOME BIREFRINGENCE-LIKE 22 1Chr19:1155711–1161298 (-)5.88e-13
Glyma.19G012300 hypothetical protein NA 1Chr19:1165111–1173031 (-)5.88e-13
Glyma.20G019500 hypothetical protein AT1G21065:AT1G21065:secondary thiamine-phosphate synthase enzyme 1Chr20:2039210–2040459 (+)6.836e-11
Glyma.20G019800 hypothetical protein AT1G49350:AT1G49350:pfkB-like carbohydrate kinase family protein 1Chr20:2051817–2057262 (+)2.856e-13