Soybean mGWAS DBExplore The Genetic Basis Of Soybean Metabolism Glycine max
Overview Annotation GWAS Evidence Associated genes

P52876

Metabolite ID
P52876
Deionized mass
502.1838 Da
Average m/z
503.1889
Average RT
29.3088
Adduct
[M+H]+
Association scope
Overlapping genes only
Associated genes
62
GWAS result file
Available
Open in Soybean Metabolome Repository

Candidate annotations

Search compound candidates by deionized mass and tolerance. Follow compound IDs for database records, or use name searches to explore chemistry and soybean literature. About candidate annotations

GWAS Evidence

Dataset: indexed GWAS records.

Settings

SNP counts, plot highlights, gene associations and downloads use P < 10⁻¹⁰. Changing the threshold updates this page together.

Loading GWAS records…

Loading Manhattan plot…

This Q–Q plot describes the indexed records. For downsampled files, it does not represent the distribution across all tested variants. Data coverage

Loading Q–Q plot…
Loading GWAS summary…

Associated genes

62 genes linked to SNP records with P < 10⁻¹⁰ in the selected scope. Supporting SNP records are counted per feature–gene pair.

Gene ID Alias Description Arabidopsis ortholog Supporting SNP recordsGene interval (1-based)Minimum P
Glyma.16G209300 hypothetical protein NA 3Chr16:36856833–36863994 (-)8.018e-15
Glyma.04G107400 hypothetical protein AT2G20510:TIM44-1:translocase inner membrane subunit 44-1__AT2G36070:TIM44-2:translocase inner membrane subunit 44-2 2Chr04:11276495–11288391 (+)2.443e-13
Glyma.09G053800 hypothetical protein NA 2Chr09:4737413–4755632 (-)8.64e-12
Glyma.13G134400 hypothetical protein AT2G37370:AT2G37370:centrosomal protein of 135 kDa-like protein 2Chr13:24677399–24693129 (-)5.508e-11
Glyma.16G031600 hypothetical protein NA 2Chr16:2964569–2985013 (+)2.52e-13
Glyma.18G240600 hypothetical protein AT2G40730:CTEXP:kinase family with ARM repeat domain-containing protein 2Chr18:52922157–52933250 (-)8.577e-11
Glyma.02G205400 hypothetical protein AT5G57880:MPS1:multipolar spindle 1 1Chr02:39040135–39043181 (-)1.797e-12
Glyma.02G265700 hypothetical protein NA 1Chr02:45059017–45060529 (-)2.371e-11
Glyma.03G022100 hypothetical protein AT4G32430:AT4G32430:Pentatricopeptide repeat (PPR) superfamily protein 1Chr03:2301675–2307263 (+)3.457e-11
Glyma.03G023000 hypothetical protein AT4G00220:JLO:Lateral organ boundaries (LOB) domain family protein 1Chr03:2423540–2428634 (-)6.133e-14
Glyma.04G105200 hypothetical protein AT1G78000:SULTR1;2:sulfate transporter 1;2 1Chr04:10100969–10108172 (-)5.323e-11
Glyma.04G105500 hypothetical protein NA 1Chr04:10440510–10445278 (+)5.323e-11
Glyma.04G107100 hypothetical protein AT1G22060:AT1G22060:sporulation-specific protein 1Chr04:11239281–11250948 (-)2.443e-13
Glyma.04G107300 hypothetical protein AT1G36310:AT1G36310:S-adenosyl-L-methionine-dependent methyltransferases superfamily protein 1Chr04:11253648–11256731 (+)2.443e-13
Glyma.04G110600 hypothetical protein NA 1Chr04:12199550–12200299 (-)2.443e-13
Glyma.04G110700 hypothetical protein AT1G72190:AT1G72190:D-isomer specific 2-hydroxyacid dehydrogenase family protein 1Chr04:12206027–12222024 (-)2.443e-13
Glyma.04G112200 hypothetical protein AT5G51750:SBT1.3:subtilase 1.3 1Chr04:12562882–12565006 (+)7.22e-15
Glyma.05G236700 hypothetical protein AT4G33760:AT4G33760:tRNA synthetase class II (D, K and N) family protein 1Chr05:41301540–41310727 (+)2.275e-13
Glyma.05G237800 hypothetical protein AT1G48790:AMSH1:associated molecule with the SH3 domain of STAM 1 1Chr05:41406807–41413022 (-)9.001e-16
Glyma.06G085900 hypothetical protein AT2G25830:AT2G25830:YebC-like protein 1Chr06:6617102–6622706 (-)7.409e-11
Glyma.06G313500 hypothetical protein NA 1Chr06:50191600–50203098 (-)1.091e-11
Glyma.06G315100 hypothetical protein AT5G04930:ALA1:aminophospholipid ATPase 1 1Chr06:50401945–50408153 (+)5.999e-11
Glyma.06G317100 hypothetical protein AT5G61520:AT5G61520:Major facilitator superfamily protein 1Chr06:50586679–50589765 (+)6.53e-11
Glyma.09G052900 hypothetical protein NA 1Chr09:4652312–4653046 (+)2.138e-11
Glyma.09G058900 hypothetical protein NA 1Chr09:5397968–5404650 (-)7.55e-12
Glyma.09G084300 hypothetical protein AT2G34680:AIR9:Outer arm dynein light chain 1 protein 1Chr09:10129602–10197250 (-)3.656e-12
Glyma.09G282900 hypothetical protein AT2G29090:CYP707A2:cytochrome P450, family 707, subfamily A, polypeptide 2 1Chr09:49863377–49871270 (+)2.978e-11
Glyma.10G078700 hypothetical protein NA 1Chr10:8882318–8903950 (+)3.11e-12
Glyma.10G079100 hypothetical protein NA 1Chr10:8960669–8962364 (-)3.11e-12
Glyma.10G079800 hypothetical protein NA 1Chr10:9223520–9228511 (-)3.11e-12
Glyma.10G080000 hypothetical protein AT3G11660:NHL1:NDR1/HIN1-like 1__AT3G52470:AT3G52470:Late embryosis abundant (LEA) hydroxyproline-rich glycoprotein fam… 1Chr10:9258476–9260697 (-)3.11e-12
Glyma.10G081200 hypothetical protein NA 1Chr10:9600771–9603988 (-)1.141e-12
Glyma.10G081700 hypothetical protein NA 1Chr10:9752508–9758422 (+)1.794e-12
Glyma.11G048300 hypothetical protein AT4G37640:ACA2:calcium ATPase 2 1Chr11:3601241–3607177 (+)2.221e-11
Glyma.11G127100 hypothetical protein AT1G06040:STO:B-box zinc finger family protein 1Chr11:9656242–9659517 (+)1.62e-11
Glyma.11G127200 hypothetical protein AT3G59480:AT3G59480:pfkB-like carbohydrate kinase family protein 1Chr11:9660434–9665570 (-)1.62e-11
Glyma.11G127300 hypothetical protein AT2G28480:AT2G28480:RNA-binding CRS1 / YhbY (CRM) domain protein 1Chr11:9667918–9671917 (-)1.62e-11
Glyma.12G018000 hypothetical protein NA 1Chr12:1252709–1256330 (-)7.158e-11
Glyma.12G028800 hypothetical protein AT1G50300:TAF15:TBP-associated factor 15 1Chr12:2148313–2153234 (-)7.71e-11
Glyma.12G204000 hypothetical protein AT1G03687:AT1G03687:DTW domain-containing protein 1Chr12:36428558–36432835 (+)5.249e-12
Glyma.12G204400 hypothetical protein AT4G03560:TPC1:two-pore channel 1 1Chr12:36473422–36498915 (+)5.249e-12
Glyma.13G134300 hypothetical protein NA 1Chr13:24664171–24665742 (-)5.508e-11
Glyma.13G181100 hypothetical protein AT2G47960:AT2G47960:trafficking protein particle complex subunit-like protein 1Chr13:29426889–29433599 (-)1.595e-11
Glyma.13G184500 hypothetical protein NA 1Chr13:29829471–29834027 (+)3.776e-13
Glyma.14G044000 hypothetical protein AT5G62290:AT5G62290:nucleotide-sensitive chloride conductance regulator (ICln) family protein 1Chr14:3343611–3346483 (+)8.435e-12
Glyma.14G045100 hypothetical protein AT3G43600:AAO2:aldehyde oxidase 2__AT1G04580:AO4:aldehyde oxidase 4__AT5G20960:AO1:aldehyde oxidase 1__AT2G27150:AAO3:a… 1Chr14:3438828–3448015 (-)4.162e-11
Glyma.14G093100 hypothetical protein NA 1Chr14:8654730–8655892 (-)3.286e-13
Glyma.14G191400 hypothetical protein NA 1Chr14:45610980–45612600 (+)5.523e-11
Glyma.16G032000 hypothetical protein AT4G01270:AT4G01270:RING/U-box superfamily protein 1Chr16:3031286–3036010 (+)5.603e-11
Glyma.16G142300 hypothetical protein AT4G36850:AT4G36850:PQ-loop repeat family protein / transmembrane family protein 1Chr16:30086178–30091466 (-)1.356e-11
Glyma.16G143400 hypothetical protein NA 1Chr16:30337469–30338390 (-)7.555e-11
Glyma.16G207900 hypothetical protein AT5G08450:AT5G08450:zinc finger CCCH domain protein 1Chr16:36754888–36763450 (+)9.353e-11
Glyma.16G208400 hypothetical protein NA 1Chr16:36789890–36801967 (-)4.494e-11
Glyma.16G208500 EIF6 AT3G55620:eIF6A:Translation initiation factor IF6 1Chr16:36806718–36809299 (+)6.693e-12
Glyma.17G257100 hypothetical protein AT1G75660:XRN3:5'-3' exoribonuclease 3 1Chr17:41113121–41125026 (+)2.815e-11
Glyma.17G258400 hypothetical protein AT1G30755:AT1G30755:elongation factor G, putative (DUF668) 1Chr17:41248979–41254225 (+)3.845e-11
Glyma.17G258700 hypothetical protein AT4G24190:SHD:Chaperone protein htpG family protein 1Chr17:41280124–41284980 (-)5.773e-12
Glyma.18G044900 hypothetical protein AT1G66120:AAE11:AMP-dependent synthetase and ligase family protein__AT1G68270:AT1G68270:AMP-dependent synthetase and li… 1Chr18:3881382–3884162 (+)6.023e-11
Glyma.18G045700 hypothetical protein NA 1Chr18:3956176–3958846 (+)3.662e-12
Glyma.19G006900 hypothetical protein AT5G14700:AT5G14700:NAD(P)-binding Rossmann-fold superfamily protein 1Chr19:686556–692466 (-)2.116e-12
Glyma.19G127500 hypothetical protein NA 1Chr19:38615244–38616720 (-)7.918e-11
Glyma.20G022500 hypothetical protein NA 1Chr20:2342943–2353164 (+)1.258e-13