Soybean mGWAS DBExplore The Genetic Basis Of Soybean Metabolism Glycine max
Overview Annotation GWAS Evidence Associated genes

P52684

Metabolite ID
P52684
Deionized mass
328.2019 Da
Average m/z
329.2096
Average RT
28.9367
Adduct
[M+H]+
Association scope
Overlapping genes only
Associated genes
41
GWAS result file
Available
Open in Soybean Metabolome Repository

Candidate annotations

Search compound candidates by deionized mass and tolerance. Follow compound IDs for database records, or use name searches to explore chemistry and soybean literature. About candidate annotations

GWAS Evidence

Dataset: indexed GWAS records.

Settings

SNP counts, plot highlights, gene associations and downloads use P < 10⁻¹⁰. Changing the threshold updates this page together.

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Associated genes

41 genes linked to SNP records with P < 10⁻¹⁰ in the selected scope. Supporting SNP records are counted per feature–gene pair.

Gene ID Alias Description Arabidopsis ortholog Supporting SNP recordsGene interval (1-based)Minimum P
Glyma.06G313500 hypothetical protein NA 3Chr06:50191600–50203098 (-)1.321e-15
Glyma.14G093100 hypothetical protein NA 2Chr14:8654730–8655892 (-)3.287e-15
Glyma.20G021900 hypothetical protein AT5G37340:AT5G37340:ZPR1 zinc-finger domain protein 2Chr20:2227480–2247807 (+)2.089e-11
Glyma.20G107200 hypothetical protein AT4G38540:AT4G38540:FAD/NAD(P)-binding oxidoreductase family protein 2Chr20:34984922–34988496 (+)1.919e-13
Glyma.01G120000 hypothetical protein NA 1Chr01:41270985–41274854 (+)8.296e-13
Glyma.02G125700 hypothetical protein NA 1Chr02:12589185–12591860 (-)5.709e-11
Glyma.03G023000 hypothetical protein AT4G00220:JLO:Lateral organ boundaries (LOB) domain family protein 1Chr03:2423540–2428634 (-)8.407e-12
Glyma.05G224700 hypothetical protein NA 1Chr05:40351005–40361888 (+)4.86e-11
Glyma.05G236400 hypothetical protein AT1G23210:GH9B6:glycosyl hydrolase 9B6__AT1G70710:GH9B1:glycosyl hydrolase 9B1 1Chr05:41274513–41279615 (-)1.837e-11
Glyma.05G236700 hypothetical protein AT4G33760:AT4G33760:tRNA synthetase class II (D, K and N) family protein 1Chr05:41301540–41310727 (+)9.022e-13
Glyma.06G078400 hypothetical protein AT4G31290:AT4G31290:ChaC-like family protein 1Chr06:6068728–6071360 (+)6.349e-11
Glyma.06G303700 hypothetical protein AT1G05230:HDG2:homeodomain GLABROUS 2 1Chr06:49315918–49324382 (+)1.716e-11
Glyma.06G303800 hypothetical protein AT1G05220:AT1G05220:Transmembrane protein 97, Putative__AT2G32380:AT2G32380:Transmembrane protein 97, Putative 1Chr06:49328417–49330906 (-)1.716e-11
Glyma.11G048300 hypothetical protein AT4G37640:ACA2:calcium ATPase 2 1Chr11:3601241–3607177 (+)3.399e-11
Glyma.11G049700 hypothetical protein NA 1Chr11:3731308–3734534 (+)1.517e-16
Glyma.11G050300 hypothetical protein AT2G23093:AT2G23093:Major facilitator superfamily protein 1Chr11:3765453–3771565 (+)6.526e-16
Glyma.11G050500 hypothetical protein AT5G67370:CGLD27:DUF1230 family protein (DUF1230) 1Chr11:3778152–3782174 (+)6.527e-16
Glyma.11G050600 hypothetical protein NA 1Chr11:3779988–3786583 (-)6.527e-16
Glyma.11G051600 hypothetical protein NA 1Chr11:3857225–3859564 (-)6.526e-16
Glyma.12G008300 hypothetical protein AT3G21640:TWD1:FKBP-type peptidyl-prolyl cis-trans isomerase family protein 1Chr12:613939–617457 (+)6.62e-11
Glyma.12G114500 hypothetical protein AT4G22930:PYR4:pyrimidin 4 1Chr12:11396572–11400825 (-)4.227e-11
Glyma.12G114900 hypothetical protein NA 1Chr12:11457987–11462951 (-)4.227e-11
Glyma.13G181100 hypothetical protein AT2G47960:AT2G47960:trafficking protein particle complex subunit-like protein 1Chr13:29426889–29433599 (-)2.008e-13
Glyma.14G094900 hypothetical protein AT1G60960:IRT3:iron regulated transporter 3 1Chr14:8824846–8827258 (-)3.767e-11
Glyma.14G201600 hypothetical protein NA 1Chr14:46703283–46706500 (+)9.338e-12
Glyma.14G201700 hypothetical protein NA 1Chr14:46711634–46715644 (-)9.338e-12
Glyma.15G107500 hypothetical protein NA 1Chr15:8435042–8443925 (+)4.617e-11
Glyma.15G124000 hypothetical protein NA 1Chr15:9845097–9849312 (-)8.905e-12
Glyma.16G025300 hypothetical protein NA 1Chr16:2438122–2440528 (-)2.313e-11
Glyma.16G025400 hypothetical protein AT2G46430:CNGC3:cyclic nucleotide gated channel 3 1Chr16:2443212–2450834 (-)2.313e-11
Glyma.19G012100 hypothetical protein AT3G28150:TBL22:TRICHOME BIREFRINGENCE-LIKE 22 1Chr19:1155711–1161298 (-)3.669e-13
Glyma.19G012300 hypothetical protein NA 1Chr19:1165111–1173031 (-)3.669e-13
Glyma.19G128200 hypothetical protein NA 1Chr19:38739769–38743404 (+)6.972e-12
Glyma.20G021600 PT12 AT1G20860:PHT1;8:phosphate transporter 1;8__AT1G76430:PHT1;9:phosphate transporter 1;9 1Chr20:2196534–2205616 (+)4.621e-12
Glyma.20G022000 hypothetical protein NA 1Chr20:2262949–2267229 (+)2.089e-11
Glyma.20G105500 hypothetical protein AT4G38540:AT4G38540:FAD/NAD(P)-binding oxidoreductase family protein__AT5G05320:AT5G05320:FAD/NAD(P)-binding oxidoreduc… 1Chr20:34813357–34815998 (-)2.042e-11
Glyma.20G106900 hypothetical protein NA 1Chr20:34962043–34967985 (+)6.389e-12
Glyma.20G107500 hypothetical protein AT2G16910:AMS:basic helix-loop-helix (bHLH) DNA-binding superfamily protein 1Chr20:35011922–35015196 (-)1.037e-12
Glyma.20G107700 hypothetical protein AT2G16860:AT2G16860:GCIP-interacting family protein 1Chr20:35033414–35036538 (+)1.229e-11
Glyma.20G109600 hypothetical protein AT3G14290:PAE2:20S proteasome alpha subunit E2__AT1G53850:PAE1:20S proteasome alpha subunit E1 1Chr20:35200934–35205885 (-)1.566e-11
Glyma.20G109800 hypothetical protein AT2G35130:AT2G35130:Tetratricopeptide repeat (TPR)-like superfamily protein 1Chr20:35213258–35219502 (+)2.116e-11