Soybean mGWAS DBExplore The Genetic Basis Of Soybean Metabolism Glycine max
Overview Annotation GWAS Evidence Associated genes

P52585

Metabolite ID
P52585
Deionized mass
395.1969 Da
Average m/z
396.2038
Average RT
28.7379
Adduct
[M+H]+
Association scope
Overlapping genes only
Associated genes
56
GWAS result file
Available
Open in Soybean Metabolome Repository

Candidate annotations

Search compound candidates by deionized mass and tolerance. Follow compound IDs for database records, or use name searches to explore chemistry and soybean literature. About candidate annotations

GWAS Evidence

Dataset: indexed GWAS records.

Settings

SNP counts, plot highlights, gene associations and downloads use P < 10⁻¹⁰. Changing the threshold updates this page together.

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Associated genes

56 genes linked to SNP records with P < 10⁻¹⁰ in the selected scope. Supporting SNP records are counted per feature–gene pair.

Gene ID Alias Description Arabidopsis ortholog Supporting SNP recordsGene interval (1-based)Minimum P
Glyma.09G060200 hypothetical protein AT5G57150:AT5G57150:basic helix-loop-helix (bHLH) DNA-binding superfamily protein 3Chr09:5571201–5579976 (-)1.409e-15
Glyma.09G058900 hypothetical protein NA 2Chr09:5397968–5404650 (-)6.74e-15
Glyma.13G135700 hypothetical protein NA 2Chr13:24812720–24818735 (+)2.206e-12
Glyma.13G135800 hypothetical protein AT5G02800:CDL1:Protein kinase superfamily protein 2Chr13:24820151–24823999 (-)2.206e-12
Glyma.16G031600 hypothetical protein NA 2Chr16:2964569–2985013 (+)2.029e-11
Glyma.18G273000 hypothetical protein NA 2Chr18:55575628–55582063 (-)1.657e-15
Glyma.02G294500 hypothetical protein AT5G50850:MAB1:Transketolase family protein 1Chr02:47272683–47277831 (-)4.586e-11
Glyma.03G174900 hypothetical protein NA 1Chr03:38853393–38857607 (-)5.529e-11
Glyma.04G082800 hypothetical protein NA 1Chr04:6977997–6983005 (-)5.034e-12
Glyma.05G034000 hypothetical protein AT4G03400:DFL2:Auxin-responsive GH3 family protein 1Chr05:2965889–2971412 (-)6.297e-11
Glyma.05G127200 hypothetical protein AT1G29790:AT1G29790:S-adenosyl-L-methionine-dependent methyltransferases superfamily protein 1Chr05:32014213–32017922 (-)2.522e-13
Glyma.05G127300 hypothetical protein AT1G64520:RPN12a:regulatory particle non-ATPase 12A__AT5G42040:RPN12b:regulatory particle non-ATPase 12B 1Chr05:32021521–32025767 (-)9.843e-13
Glyma.05G127400 hypothetical protein AT1G29850:AT1G29850:double-stranded DNA-binding family protein 1Chr05:32030115–32033716 (+)9.843e-13
Glyma.05G127500 hypothetical protein NA 1Chr05:32041345–32049554 (+)1.727e-11
Glyma.05G127800 hypothetical protein AT4G18240:SS4:starch synthase 4 1Chr05:32125404–32138244 (+)2.699e-11
Glyma.05G127900 SAD1 AT5G48870:SAD1:Small nuclear ribonucleoprotein family protein 1Chr05:32139620–32141770 (-)2.699e-11
Glyma.05G128200 hypothetical protein AT5G46330:FLS2:Leucine-rich receptor-like protein kinase family protein 1Chr05:32158034–32162343 (-)2.699e-11
Glyma.06G019800 hypothetical protein NA 1Chr06:1494230–1501925 (+)1.476e-11
Glyma.06G129800 hypothetical protein AT5G53030:AT5G53030:uncharacterized protein 1Chr06:10667029–10669377 (+)1.111e-11
Glyma.06G130100 hypothetical protein AT3G49290:ABIL2:ABL interactor-like protein 2 1Chr06:10695256–10699675 (+)1.111e-11
Glyma.06G130300 hypothetical protein AT5G53080:AT5G53080:Tetratricopeptide repeat (TPR)-like superfamily protein 1Chr06:10709045–10716245 (-)2.973e-11
Glyma.06G132800 hypothetical protein AT4G27680:AT4G27680:P-loop containing nucleoside triphosphate hydrolases superfamily protein__AT5G53540:AT5G53540:P-loo… 1Chr06:10938746–10944330 (-)9.336e-11
Glyma.06G133000 hypothetical protein NA 1Chr06:10954830–10958961 (+)9.336e-11
Glyma.06G133400 hypothetical protein AT5G53570:AT5G53570:Ypt/Rab-GAP domain of gyp1p superfamily protein 1Chr06:10976199–10981248 (-)9.336e-11
Glyma.06G133600 hypothetical protein NA 1Chr06:10992766–10995481 (+)9.336e-11
Glyma.06G133800 hypothetical protein NA 1Chr06:11001171–11002938 (-)9.336e-11
Glyma.08G182000 hypothetical protein NA 1Chr08:14601875–14604750 (+)1.325e-11
Glyma.08G239500 hypothetical protein AT4G09180:FBH2:basic helix-loop-helix (bHLH) DNA-binding superfamily protein 1Chr08:20444715–20447665 (-)1.19e-11
Glyma.09G038600 hypothetical protein AT5G49360:BXL1:beta-xylosidase 1 1Chr09:3236472–3243191 (+)6.652e-11
Glyma.09G038700 hypothetical protein NA 1Chr09:3245046–3247956 (+)6.652e-11
Glyma.09G038800 hypothetical protein NA 1Chr09:3251349–3254283 (+)4.835e-12
Glyma.09G038900 hypothetical protein NA 1Chr09:3263227–3268153 (+)6.652e-11
Glyma.09G039000 hypothetical protein NA 1Chr09:3270971–3276530 (-)1.935e-11
Glyma.09G056300 hypothetical protein NA 1Chr09:5059486–5068979 (+)3.153e-12
Glyma.09G057400 hypothetical protein AT5G57320:VLN5:actin filament bundling protein P-115-ABP protein 1Chr09:5173554–5193820 (-)6.306e-11
Glyma.09G059600 hypothetical protein AT4G30010:AT4G30010:ATP-dependent RNA helicase 1Chr09:5504630–5507434 (+)2.371e-11
Glyma.09G059700 hypothetical protein AT4G29940:PRHA:pathosis related homeodomain protein A 1Chr09:5513108–5520158 (+)2.371e-11
Glyma.09G070400 hypothetical protein NA 1Chr09:7185981–7189206 (+)5.046e-11
Glyma.12G202200 hypothetical protein AT2G20860:LIP1:lipoic acid synthase 1 1Chr12:36267599–36271584 (+)5.784e-14
Glyma.12G202300 hypothetical protein NA 1Chr12:36275438–36276838 (+)5.784e-14
Glyma.12G202400 hypothetical protein AT4G03415:PP2C52:Protein phosphatase 2C family protein 1Chr12:36289704–36295084 (-)8.291e-12
Glyma.12G202700 hypothetical protein AT2G20875:EPF1:epidermal patterning factor 1 1Chr12:36329374–36330905 (-)6.029e-16
Glyma.12G203100 hypothetical protein NA 1Chr12:36353913–36356238 (+)1.881e-13
Glyma.12G203300 hypothetical protein AT4G03430:EMB2770:pre-mRNA splicing factor-like protein 1Chr12:36371465–36377700 (-)7.98e-14
Glyma.12G203600 EXPB8 AT2G20750:EXPB1:expansin B1 1Chr12:36390283–36394245 (-)3.379e-11
Glyma.13G135300 hypothetical protein NA 1Chr13:24770681–24773826 (+)1.993e-11
Glyma.13G135400 hypothetical protein AT5G12130:PDE149:integral membrane TerC family protein 1Chr13:24786242–24791938 (+)1.993e-11
Glyma.13G135500 hypothetical protein AT5G02780:GSTL1:glutathione transferase lambda 1 1Chr13:24798567–24801567 (+)2.206e-12
Glyma.15G009800 hypothetical protein NA 1Chr15:753771–758859 (-)6.951e-11
Glyma.15G109500 hypothetical protein AT4G22030:AT4G22030:F-box protein with a domain protein 1Chr15:8591856–8593774 (-)7.032e-11
Glyma.16G039800 hypothetical protein NA 1Chr16:3730538–3733668 (-)9.135e-16
Glyma.16G121400 hypothetical protein NA 1Chr16:26989007–26992349 (+)7.704e-12
Glyma.16G121500 hypothetical protein NA 1Chr16:27007186–27010856 (+)3.976e-14
Glyma.16G180000 hypothetical protein NA 1Chr16:34064572–34069421 (+)9.802e-11
Glyma.16G180100 hypothetical protein NA 1Chr16:34070806–34076053 (+)9.802e-11
Glyma.18G273500 hypothetical protein AT5G15800:SEP1:K-box region and MADS-box transcription factor family protein 1Chr18:55619766–55625860 (+)9.147e-13