Overview Annotation GWAS Evidence Associated genes

P52544

Metabolite ID
P52544
Deionized mass
289.1800 Da
Average m/z
290.1853
Average RT
28.6845
Adduct
[M+H]+
Association scope
Overlapping genes only
Associated genes
9
GWAS result file
Available

Candidate annotations

Search compound candidates by deionized mass and tolerance. Follow compound IDs for database records, or use name searches to explore chemistry and soybean literature. About candidate annotations

GWAS Evidence

Dataset: indexed GWAS records.

Settings

SNP counts, plot highlights, gene associations and downloads use P < 10⁻¹⁰. Changing the threshold updates this page together.

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This Q–Q plot describes the indexed records. For downsampled files, it does not represent the distribution across all tested variants. Data coverage

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Associated genes

9 genes linked to SNP records with P < 10⁻¹⁰ in the selected scope. Supporting SNP records are counted per feature–gene pair.

Gene ID Alias Description Arabidopsis ortholog Supporting SNP recordsGene interval (1-based)Minimum P
Glyma.15G235600 hypothetical protein AT3G54440:AT3G54440:glycoside hydrolase family 2 protein 2Chr15:44320970–44329382 (-)1.709e-13
Glyma.15G236900 hypothetical protein AT3G07940:AT3G07940:Calcium-dependent ARF-type GTPase activating protein family 2Chr15:44632692–44645167 (-)1.709e-13
Glyma.15G240800 hypothetical protein AT1G17160:AT1G17160:pfkB-like carbohydrate kinase family protein 2Chr15:45714741–45729325 (-)1.709e-13
Glyma.15G232600 hypothetical protein NA 1Chr15:43719004–43723574 (+)1.709e-13
Glyma.15G237000 hypothetical protein NA 1Chr15:44647816–44649775 (+)1.709e-13
Glyma.15G239100 hypothetical protein NA 1Chr15:44974371–44975270 (-)1.709e-13
Glyma.15G240600 hypothetical protein AT4G25300:AT4G25300:2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein 1Chr15:45632045–45635618 (+)3.186e-11
Glyma.15G241100 hypothetical protein NA 1Chr15:45747635–45752482 (+)1.709e-13
Glyma.20G219100 hypothetical protein AT3G02830:ZFN1:zinc finger protein 1 1Chr20:45490419–45496014 (+)8.302e-11