Soybean mGWAS DBExplore The Genetic Basis Of Soybean Metabolism Glycine max
Overview Annotation GWAS Evidence Associated genes

P52360

Metabolite ID
P52360
Deionized mass
454.1925 Da
Average m/z
455.1969
Average RT
28.5793
Adduct
[M+H]+
Association scope
Overlapping genes only
Associated genes
53
GWAS result file
Available
Open in Soybean Metabolome Repository

Candidate annotations

Search compound candidates by deionized mass and tolerance. Follow compound IDs for database records, or use name searches to explore chemistry and soybean literature. About candidate annotations

GWAS Evidence

Dataset: indexed GWAS records.

Settings

SNP counts, plot highlights, gene associations and downloads use P < 10⁻¹⁰. Changing the threshold updates this page together.

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Associated genes

53 genes linked to SNP records with P < 10⁻¹⁰ in the selected scope. Supporting SNP records are counted per feature–gene pair.

Gene ID Alias Description Arabidopsis ortholog Supporting SNP recordsGene interval (1-based)Minimum P
Glyma.16G147900 hypothetical protein NA 4Chr16:30864919–30872425 (+)3.785e-11
Glyma.06G305700 hypothetical protein AT2G05710:ACO3:aconitase 3 3Chr06:49451501–49461369 (-)1.816e-11
Glyma.03G120100 hypothetical protein AT5G26120:ASD2:alpha-L-arabinofuranosidase 2 2Chr03:33174618–33180955 (+)2.051e-11
Glyma.03G171500 hypothetical protein AT3G53720:CHX20:cation/H+ exchanger 20 2Chr03:38601039–38606103 (+)6.08e-11
Glyma.09G277300 hypothetical protein NA 2Chr09:49271634–49276648 (-)9.69e-13
Glyma.13G134400 hypothetical protein AT2G37370:AT2G37370:centrosomal protein of 135 kDa-like protein 2Chr13:24677399–24693129 (-)5.61e-11
Glyma.13G135700 hypothetical protein NA 2Chr13:24812720–24818735 (+)2.067e-12
Glyma.13G135800 hypothetical protein AT5G02800:CDL1:Protein kinase superfamily protein 2Chr13:24820151–24823999 (-)2.067e-12
Glyma.16G031600 hypothetical protein NA 2Chr16:2964569–2985013 (+)6.116e-12
Glyma.16G147400 hypothetical protein NA 2Chr16:30817535–30821568 (+)2.425e-13
Glyma.02G287700 hypothetical protein AT3G58780:SHP1:K-box region and MADS-box transcription factor family protein__AT2G42830:SHP2:K-box region and MADS-box … 1Chr02:46797935–46805223 (-)1.377e-11
Glyma.03G019700 hypothetical protein AT3G61130:GAUT1:galacturonosyltransferase 1 1Chr03:2010835–2018418 (+)7.462e-12
Glyma.03G022100 hypothetical protein AT4G32430:AT4G32430:Pentatricopeptide repeat (PPR) superfamily protein 1Chr03:2301675–2307263 (+)7.052e-11
Glyma.03G023000 hypothetical protein AT4G00220:JLO:Lateral organ boundaries (LOB) domain family protein 1Chr03:2423540–2428634 (-)1.557e-11
Glyma.03G171200 hypothetical protein NA 1Chr03:38579274–38585023 (+)6.08e-11
Glyma.03G171400 hypothetical protein NA 1Chr03:38589307–38590274 (+)6.08e-11
Glyma.03G171600 hypothetical protein AT3G53720:CHX20:cation/H+ exchanger 20 1Chr03:38610797–38616471 (+)6.08e-11
Glyma.04G063900 hypothetical protein NA 1Chr04:5310107–5313853 (+)1.908e-11
Glyma.05G034000 hypothetical protein AT4G03400:DFL2:Auxin-responsive GH3 family protein 1Chr05:2965889–2971412 (-)4.637e-11
Glyma.06G078400 hypothetical protein AT4G31290:AT4G31290:ChaC-like family protein 1Chr06:6068728–6071360 (+)1.433e-11
Glyma.06G079400 hypothetical protein NA 1Chr06:6105463–6107101 (+)1.204e-12
Glyma.06G084800 hypothetical protein NA 1Chr06:6515571–6517480 (-)6.795e-12
Glyma.06G085000 hypothetical protein NA 1Chr06:6524339–6529016 (-)6.795e-12
Glyma.06G085100 hypothetical protein NA 1Chr06:6531956–6537295 (-)6.795e-12
Glyma.06G085200 hypothetical protein NA 1Chr06:6540849–6545557 (+)1.537e-11
Glyma.06G305300 hypothetical protein NA 1Chr06:49431590–49435985 (-)1.816e-11
Glyma.06G305600 hypothetical protein NA 1Chr06:49446542–49450635 (-)1.816e-11
Glyma.08G150100 hypothetical protein AT2G44450:BGLU15:beta glucosidase 15 1Chr08:11525692–11536927 (+)7.862e-12
Glyma.11G162500 hypothetical protein AT2G40435:AT2G40435:transcription factor SCREAM-like protein 1Chr11:15087390–15090683 (-)5.395e-11
Glyma.12G114500 hypothetical protein AT4G22930:PYR4:pyrimidin 4 1Chr12:11396572–11400825 (-)2.891e-11
Glyma.12G114900 hypothetical protein NA 1Chr12:11457987–11462951 (-)2.89e-11
Glyma.12G202200 hypothetical protein AT2G20860:LIP1:lipoic acid synthase 1 1Chr12:36267599–36271584 (+)6.114e-15
Glyma.12G202300 hypothetical protein NA 1Chr12:36275438–36276838 (+)6.114e-15
Glyma.12G202400 hypothetical protein AT4G03415:PP2C52:Protein phosphatase 2C family protein 1Chr12:36289704–36295084 (-)1.06e-12
Glyma.12G203600 EXPB8 AT2G20750:EXPB1:expansin B1 1Chr12:36390283–36394245 (-)3.343e-11
Glyma.12G204000 hypothetical protein AT1G03687:AT1G03687:DTW domain-containing protein 1Chr12:36428558–36432835 (+)3.97e-11
Glyma.12G204400 hypothetical protein AT4G03560:TPC1:two-pore channel 1 1Chr12:36473422–36498915 (+)3.97e-11
Glyma.13G134300 hypothetical protein NA 1Chr13:24664171–24665742 (-)5.61e-11
Glyma.13G135300 hypothetical protein NA 1Chr13:24770681–24773826 (+)2.232e-11
Glyma.13G135400 hypothetical protein AT5G12130:PDE149:integral membrane TerC family protein 1Chr13:24786242–24791938 (+)2.232e-11
Glyma.13G135500 hypothetical protein AT5G02780:GSTL1:glutathione transferase lambda 1 1Chr13:24798567–24801567 (+)2.067e-12
Glyma.13G201600 hypothetical protein NA 1Chr13:31521512–31522992 (+)8.466e-11
Glyma.15G035600 hypothetical protein AT3G46740:TOC75-III:translocon at the outer envelope membrane of chloroplasts 75-III 1Chr15:2830678–2835534 (+)5.735e-12
Glyma.15G124000 hypothetical protein NA 1Chr15:9845097–9849312 (-)1.657e-12
Glyma.15G124500 MLO-like protein 13 AT4G24250:MLO13:Seven transmembrane MLO family protein 1Chr15:9888761–9894068 (-)3.44e-14
Glyma.16G117400 hypothetical protein NA 1Chr16:26234552–26238233 (-)2.834e-11
Glyma.16G145100 hypothetical protein NA 1Chr16:30578388–30581421 (-)2.674e-11
Glyma.16G145600 hypothetical protein AT1G11310:MLO2:Seven transmembrane MLO family protein__AT2G39200:MLO12:Seven transmembrane MLO family protein__AT1G6156… 1Chr16:30652378–30659548 (+)2.674e-11
Glyma.16G147500 hypothetical protein NA 1Chr16:30832490–30834904 (+)8.876e-12
Glyma.16G179800 hypothetical protein AT5G52520:OVA6:Class II aaRS and biotin synthetases superfamily protein 1Chr16:34022480–34027055 (-)3.662e-13
Glyma.16G208500 EIF6 AT3G55620:eIF6A:Translation initiation factor IF6 1Chr16:36806718–36809299 (+)1.413e-11
Glyma.18G091600 hypothetical protein NA 1Chr18:9165090–9166656 (-)3.193e-11
Glyma.18G266200 hypothetical protein NA 1Chr18:55065716–55066843 (-)1.84e-11