Soybean mGWAS DBExplore The Genetic Basis Of Soybean Metabolism Glycine max
Overview Annotation GWAS Evidence Associated genes

P52344

Metabolite ID
P52344
Deionized mass
172.1228 Da
Average m/z
173.1300
Average RT
28.5749
Adduct
[M+H]+
Association scope
Overlapping genes only
Associated genes
49
GWAS result file
Available
Open in Soybean Metabolome Repository

Candidate annotations

Search compound candidates by deionized mass and tolerance. Follow compound IDs for database records, or use name searches to explore chemistry and soybean literature. About candidate annotations

GWAS Evidence

Dataset: indexed GWAS records.

Settings

SNP counts, plot highlights, gene associations and downloads use P < 10⁻¹⁰. Changing the threshold updates this page together.

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Associated genes

49 genes linked to SNP records with P < 10⁻¹⁰ in the selected scope. Supporting SNP records are counted per feature–gene pair.

Gene ID Alias Description Arabidopsis ortholog Supporting SNP recordsGene interval (1-based)Minimum P
Glyma.16G114900 hypothetical protein NA 3Chr16:25456379–25485759 (+)6.031e-12
Glyma.05G149900 hypothetical protein NA 2Chr05:34389242–34393621 (-)1.528e-12
Glyma.08G123500 hypothetical protein NA 2Chr08:9494946–9505931 (-)1.152e-12
Glyma.08G338900 hypothetical protein NA 2Chr08:45536950–45543029 (-)1.16e-12
Glyma.09G277300 hypothetical protein NA 2Chr09:49271634–49276648 (-)5.145e-13
Glyma.02G287700 hypothetical protein AT3G58780:SHP1:K-box region and MADS-box transcription factor family protein__AT2G42830:SHP2:K-box region and MADS-box … 1Chr02:46797935–46805223 (-)1.995e-11
Glyma.03G147400 hypothetical protein NA 1Chr03:36293698–36295294 (+)7.153e-11
Glyma.03G177700 hypothetical protein NA 1Chr03:39046772–39051158 (+)6.588e-11
Glyma.05G124700 hypothetical protein NA 1Chr05:31807311–31817648 (+)5.112e-11
Glyma.05G127300 hypothetical protein AT1G64520:RPN12a:regulatory particle non-ATPase 12A__AT5G42040:RPN12b:regulatory particle non-ATPase 12B 1Chr05:32021521–32025767 (-)5.699e-11
Glyma.05G127400 hypothetical protein AT1G29850:AT1G29850:double-stranded DNA-binding family protein 1Chr05:32030115–32033716 (+)5.699e-11
Glyma.05G127500 hypothetical protein NA 1Chr05:32041345–32049554 (+)9.414e-12
Glyma.05G127800 hypothetical protein AT4G18240:SS4:starch synthase 4 1Chr05:32125404–32138244 (+)3.186e-11
Glyma.05G127900 SAD1 AT5G48870:SAD1:Small nuclear ribonucleoprotein family protein 1Chr05:32139620–32141770 (-)3.186e-11
Glyma.05G128200 hypothetical protein AT5G46330:FLS2:Leucine-rich receptor-like protein kinase family protein 1Chr05:32158034–32162343 (-)3.186e-11
Glyma.05G137600 hypothetical protein NA 1Chr05:33018107–33020120 (-)9.095e-13
Glyma.05G149300 hypothetical protein AT2G03870:EMB2816:Small nuclear ribonucleoprotein family protein 1Chr05:34357418–34361032 (-)5.163e-11
Glyma.05G226000 hypothetical protein AT5G19730:AT5G19730:Pectin lyase-like superfamily protein 1Chr05:40458098–40461736 (+)2.193e-11
Glyma.05G236700 hypothetical protein AT4G33760:AT4G33760:tRNA synthetase class II (D, K and N) family protein 1Chr05:41301540–41310727 (+)3.152e-12
Glyma.08G122200 hypothetical protein NA 1Chr08:9416766–9429995 (-)1.152e-12
Glyma.08G122300 hypothetical protein AT1G29390:COR314-TM2:cold regulated 314 thylakoid membrane 2 1Chr08:9435391–9437279 (+)1.152e-12
Glyma.08G122500 hypothetical protein NA 1Chr08:9441329–9445315 (-)1.152e-12
Glyma.08G122700 hypothetical protein AT1G29350:AT1G29350:RNA polymerase II degradation factor-like protein (DUF1296) 1Chr08:9452604–9458932 (+)1.152e-12
Glyma.08G210200 hypothetical protein NA 1Chr08:17010526–17012557 (+)1.746e-11
Glyma.08G210300 hypothetical protein NA 1Chr08:17011623–17012548 (-)1.746e-11
Glyma.08G211800 hypothetical protein NA 1Chr08:17104514–17105442 (-)3.906e-13
Glyma.08G338200 hypothetical protein NA 1Chr08:45509289–45511145 (+)1.16e-12
Glyma.08G338600 hypothetical protein NA 1Chr08:45522321–45523727 (-)1.16e-12
Glyma.08G338700 hypothetical protein NA 1Chr08:45527941–45529335 (-)4.411e-11
Glyma.09G280300 hypothetical protein AT2G38480:AT2G38480:Uncharacterized protein family (UPF0497) 1Chr09:49547489–49550731 (-)9.426e-11
Glyma.10G156300 hypothetical protein AT3G05210:ERCC1:nucleotide repair protein 1Chr10:39053531–39057116 (-)1.938e-16
Glyma.12G108600 hypothetical protein NA 1Chr12:9994609–9997302 (-)4.378e-11
Glyma.12G109500 hypothetical protein AT4G03415:PP2C52:Protein phosphatase 2C family protein 1Chr12:10308026–10314332 (-)4.378e-11
Glyma.12G203600 EXPB8 AT2G20750:EXPB1:expansin B1 1Chr12:36390283–36394245 (-)1.993e-11
Glyma.15G121100 hypothetical protein NA 1Chr15:9567797–9570248 (+)2.677e-11
Glyma.15G121300 hypothetical protein AT5G47760:PGLP2:2-phosphoglycolate phosphatase 2 1Chr15:9584685–9590201 (-)4.466e-11
Glyma.15G121500 hypothetical protein AT1G03370:AT1G03370:C2 calcium/lipid-binding and GRAM domain containing protein 1Chr15:9602794–9615281 (+)2.677e-11
Glyma.15G121800 hypothetical protein NA 1Chr15:9643746–9648073 (+)2.677e-11
Glyma.16G115300 hypothetical protein NA 1Chr16:25584135–25585667 (+)6.031e-12
Glyma.16G115400 hypothetical protein NA 1Chr16:25604547–25606360 (+)6.031e-12
Glyma.16G115500 hypothetical protein NA 1Chr16:25622503–25630816 (+)6.031e-12
Glyma.16G115600 hypothetical protein AT1G13410:AT1G13410:Tetratricopeptide repeat (TPR)-like superfamily protein 1Chr16:25661245–25664376 (-)6.031e-12
Glyma.16G117400 hypothetical protein NA 1Chr16:26234552–26238233 (-)4.565e-13
Glyma.16G118100 hypothetical protein AT2G17570:cPT1:Undecaprenyl pyrophosphate synthetase family protein 1Chr16:26324650–26336836 (+)2.41e-13
Glyma.16G146300 hypothetical protein NA 1Chr16:30714315–30716624 (+)4.393e-11
Glyma.16G146700 hypothetical protein NA 1Chr16:30755899–30759360 (-)4.393e-11
Glyma.16G209300 hypothetical protein NA 1Chr16:36856833–36863994 (-)1.166e-11
Glyma.18G201700 hypothetical protein NA 1Chr18:48175554–48180264 (+)4.924e-11
Glyma.20G019800 hypothetical protein AT1G49350:AT1G49350:pfkB-like carbohydrate kinase family protein 1Chr20:2051817–2057262 (+)5.93e-12