Soybean mGWAS DBExplore The Genetic Basis Of Soybean Metabolism Glycine max
Overview Annotation GWAS Evidence Associated genes

P52324

Metabolite ID
P52324
Deionized mass
469.3008 Da
Average m/z
470.3079
Average RT
28.5683
Adduct
[M+H]+
Association scope
Overlapping genes only
Associated genes
42
GWAS result file
Available
Open in Soybean Metabolome Repository

Candidate annotations

Search compound candidates by deionized mass and tolerance. Follow compound IDs for database records, or use name searches to explore chemistry and soybean literature. About candidate annotations

GWAS Evidence

Dataset: indexed GWAS records.

Settings

SNP counts, plot highlights, gene associations and downloads use P < 10⁻¹⁰. Changing the threshold updates this page together.

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Associated genes

42 genes linked to SNP records with P < 10⁻¹⁰ in the selected scope. Supporting SNP records are counted per feature–gene pair.

Gene ID Alias Description Arabidopsis ortholog Supporting SNP recordsGene interval (1-based)Minimum P
Glyma.03G023000 hypothetical protein AT4G00220:JLO:Lateral organ boundaries (LOB) domain family protein 3Chr03:2423540–2428634 (-)8.827e-14
Glyma.03G120100 hypothetical protein AT5G26120:ASD2:alpha-L-arabinofuranosidase 2 2Chr03:33174618–33180955 (+)2.041e-11
Glyma.06G315100 hypothetical protein AT5G04930:ALA1:aminophospholipid ATPase 1 2Chr06:50401945–50408153 (+)1.584e-12
Glyma.13G134400 hypothetical protein AT2G37370:AT2G37370:centrosomal protein of 135 kDa-like protein 2Chr13:24677399–24693129 (-)8.328e-12
Glyma.02G086900 hypothetical protein AT3G24130:AT3G24130:Pectin lyase-like superfamily protein 1Chr02:7553127–7557516 (-)2.008e-11
Glyma.02G087400 hypothetical protein NA 1Chr02:7618900–7624414 (-)7.042e-11
Glyma.02G087800 hypothetical protein AT5G51110:AT5G51110:Transcriptional coactivator/pterin dehydratase 1Chr02:7676883–7680136 (-)1.205e-12
Glyma.02G088200 hypothetical protein AT1G64680:AT1G64680:beta-carotene isomerase D27 1Chr02:7717452–7725490 (+)2.609e-11
Glyma.03G018800 hypothetical protein AT2G45680:TCP9:TCP family transcription factor 1Chr03:1875182–1876855 (+)4.14e-12
Glyma.03G031700 hypothetical protein AT1G79600:AT1G79600:Protein kinase superfamily protein 1Chr03:3567906–3572939 (-)2.673e-14
Glyma.03G035500 hypothetical protein NA 1Chr03:4289118–4294184 (+)5.817e-11
Glyma.03G036500 WNK5 AT3G51630:WNK5:with no lysine (K) kinase 5 1Chr03:4402746–4408323 (+)1.997e-11
Glyma.03G136100 hypothetical protein NA 1Chr03:35199503–35203392 (-)4.01e-11
Glyma.03G137900 hypothetical protein AT3G57520:SIP2:seed imbibition 2 1Chr03:35393011–35398758 (-)9.467e-11
Glyma.04G084800 hypothetical protein AT5G11630:NOXY2:uncharacterized protein 1Chr04:7187985–7192897 (+)2.201e-12
Glyma.04G112200 hypothetical protein AT5G51750:SBT1.3:subtilase 1.3 1Chr04:12562882–12565006 (+)8.273e-12
Glyma.04G116900 hypothetical protein NA 1Chr04:13696275–13700803 (+)3.961e-11
Glyma.04G128600 hypothetical protein NA 1Chr04:17866415–17867698 (+)7.785e-11
Glyma.04G130100 hypothetical protein NA 1Chr04:18193883–18196770 (-)6.845e-12
Glyma.05G219200 hypothetical protein NA 1Chr05:39875137–39879113 (-)9.26e-13
Glyma.05G236700 hypothetical protein AT4G33760:AT4G33760:tRNA synthetase class II (D, K and N) family protein 1Chr05:41301540–41310727 (+)5.368e-11
Glyma.05G237800 hypothetical protein AT1G48790:AMSH1:associated molecule with the SH3 domain of STAM 1 1Chr05:41406807–41413022 (-)2.896e-13
Glyma.06G291800 hypothetical protein NA 1Chr06:48044194–48047197 (-)2.57e-11
Glyma.06G292200 hypothetical protein AT5G44290:AT5G44290:Protein kinase superfamily protein 1Chr06:48100578–48107433 (-)2.57e-11
Glyma.06G316500 hypothetical protein AT2G47420:DIM1A:Ribosomal RNA adenine dimethylase family protein 1Chr06:50531222–50538652 (-)1.151e-11
Glyma.08G114700 hypothetical protein AT3G13600:AT3G13600:calmodulin-binding family protein 1Chr08:8768854–8772973 (-)4.239e-11
Glyma.09G060200 hypothetical protein AT5G57150:AT5G57150:basic helix-loop-helix (bHLH) DNA-binding superfamily protein 1Chr09:5571201–5579976 (-)1.437e-11
Glyma.10G078700 hypothetical protein NA 1Chr10:8882318–8903950 (+)1.432e-11
Glyma.10G079100 hypothetical protein NA 1Chr10:8960669–8962364 (-)1.432e-11
Glyma.10G079800 hypothetical protein NA 1Chr10:9223520–9228511 (-)1.432e-11
Glyma.10G080000 hypothetical protein AT3G11660:NHL1:NDR1/HIN1-like 1__AT3G52470:AT3G52470:Late embryosis abundant (LEA) hydroxyproline-rich glycoprotein fam… 1Chr10:9258476–9260697 (-)1.432e-11
Glyma.10G081200 hypothetical protein NA 1Chr10:9600771–9603988 (-)9.979e-12
Glyma.10G081700 hypothetical protein NA 1Chr10:9752508–9758422 (+)1.653e-11
Glyma.13G095000 hypothetical protein NA 1Chr13:21005327–21006774 (-)2.801e-12
Glyma.13G134300 hypothetical protein NA 1Chr13:24664171–24665742 (-)8.328e-12
Glyma.13G201600 hypothetical protein NA 1Chr13:31521512–31522992 (+)8.064e-11
Glyma.13G203900 hypothetical protein NA 1Chr13:31793697–31796601 (-)2.164e-11
Glyma.15G124500 MLO-like protein 13 AT4G24250:MLO13:Seven transmembrane MLO family protein 1Chr15:9888761–9894068 (-)3.351e-11
Glyma.16G208500 EIF6 AT3G55620:eIF6A:Translation initiation factor IF6 1Chr16:36806718–36809299 (+)1.167e-11
Glyma.16G209300 hypothetical protein NA 1Chr16:36856833–36863994 (-)2.889e-11
Glyma.18G045700 hypothetical protein NA 1Chr18:3956176–3958846 (+)6.33e-12
Glyma.18G112600 hypothetical protein NA 1Chr18:13398219–13405422 (+)2.365e-11