Soybean mGWAS DBExplore The Genetic Basis Of Soybean Metabolism Glycine max
Overview Annotation GWAS Evidence Associated genes

P52305

Metabolite ID
P52305
Deionized mass
108.0926 Da
Average m/z
109.1000
Average RT
28.5579
Adduct
[M+H]+
Association scope
Overlapping genes only
Associated genes
43
GWAS result file
Available
Open in Soybean Metabolome Repository

Candidate annotations

Search compound candidates by deionized mass and tolerance. Follow compound IDs for database records, or use name searches to explore chemistry and soybean literature. About candidate annotations

GWAS Evidence

Dataset: indexed GWAS records.

Settings

SNP counts, plot highlights, gene associations and downloads use P < 10⁻¹⁰. Changing the threshold updates this page together.

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Associated genes

43 genes linked to SNP records with P < 10⁻¹⁰ in the selected scope. Supporting SNP records are counted per feature–gene pair.

Gene ID Alias Description Arabidopsis ortholog Supporting SNP recordsGene interval (1-based)Minimum P
Glyma.06G183500 hypothetical protein AT5G50000:AT5G50000:Protein kinase superfamily protein 2Chr06:15828917–15834067 (+)1.244e-11
Glyma.08G122200 hypothetical protein NA 2Chr08:9416766–9429995 (-)1.955e-14
Glyma.08G123500 hypothetical protein NA 2Chr08:9494946–9505931 (-)1.955e-14
Glyma.09G282900 hypothetical protein AT2G29090:CYP707A2:cytochrome P450, family 707, subfamily A, polypeptide 2 2Chr09:49863377–49871270 (+)7.636e-12
Glyma.14G149300 hypothetical protein NA 2Chr14:32235308–32258014 (+)1.638e-11
Glyma.14G201600 hypothetical protein NA 2Chr14:46703283–46706500 (+)4.876e-15
Glyma.03G242800 hypothetical protein AT4G08630:AT4G08630:fas-binding factor-like protein 1Chr03:44064511–44073939 (+)5.268e-11
Glyma.05G127200 hypothetical protein AT1G29790:AT1G29790:S-adenosyl-L-methionine-dependent methyltransferases superfamily protein 1Chr05:32014213–32017922 (-)8.299e-11
Glyma.05G127500 hypothetical protein NA 1Chr05:32041345–32049554 (+)2.541e-11
Glyma.05G127800 hypothetical protein AT4G18240:SS4:starch synthase 4 1Chr05:32125404–32138244 (+)3.344e-11
Glyma.05G127900 SAD1 AT5G48870:SAD1:Small nuclear ribonucleoprotein family protein 1Chr05:32139620–32141770 (-)3.344e-11
Glyma.05G128200 hypothetical protein AT5G46330:FLS2:Leucine-rich receptor-like protein kinase family protein 1Chr05:32158034–32162343 (-)3.344e-11
Glyma.05G224500 hypothetical protein NA 1Chr05:40342583–40345336 (+)9.755e-11
Glyma.05G224700 hypothetical protein NA 1Chr05:40351005–40361888 (+)2.705e-12
Glyma.05G226000 hypothetical protein AT5G19730:AT5G19730:Pectin lyase-like superfamily protein 1Chr05:40458098–40461736 (+)1.091e-11
Glyma.06G136200 hypothetical protein AT5G54170:AT5G54170:Polyketide cyclase/dehydrase and lipid transport superfamily protein 1Chr06:11160066–11162505 (-)1.473e-11
Glyma.08G122300 hypothetical protein AT1G29390:COR314-TM2:cold regulated 314 thylakoid membrane 2 1Chr08:9435391–9437279 (+)1.955e-14
Glyma.08G122500 hypothetical protein NA 1Chr08:9441329–9445315 (-)1.955e-14
Glyma.08G122600 hypothetical protein NA 1Chr08:9445153–9450502 (+)1.867e-12
Glyma.08G122700 hypothetical protein AT1G29350:AT1G29350:RNA polymerase II degradation factor-like protein (DUF1296) 1Chr08:9452604–9458932 (+)1.955e-14
Glyma.08G209800 hypothetical protein AT3G15650:AT3G15650:alpha/beta-Hydrolases superfamily protein 1Chr08:16991275–16995651 (+)2.248e-11
Glyma.08G211800 hypothetical protein NA 1Chr08:17104514–17105442 (-)1.874e-11
Glyma.10G078700 hypothetical protein NA 1Chr10:8882318–8903950 (+)2.526e-11
Glyma.10G079100 hypothetical protein NA 1Chr10:8960669–8962364 (-)2.526e-11
Glyma.10G079800 hypothetical protein NA 1Chr10:9223520–9228511 (-)2.526e-11
Glyma.10G080000 hypothetical protein AT3G11660:NHL1:NDR1/HIN1-like 1__AT3G52470:AT3G52470:Late embryosis abundant (LEA) hydroxyproline-rich glycoprotein fam… 1Chr10:9258476–9260697 (-)2.526e-11
Glyma.10G081200 hypothetical protein NA 1Chr10:9600771–9603988 (-)9.713e-12
Glyma.10G081700 hypothetical protein NA 1Chr10:9752508–9758422 (+)8.643e-11
Glyma.11G064300 hypothetical protein AT4G36780:BEH2:BES1/BZR1 homolog 2 1Chr11:4849799–4851673 (+)5.03e-13
Glyma.12G202200 hypothetical protein AT2G20860:LIP1:lipoic acid synthase 1 1Chr12:36267599–36271584 (+)9.438e-11
Glyma.12G202300 hypothetical protein NA 1Chr12:36275438–36276838 (+)9.438e-11
Glyma.13G219300 hypothetical protein AT1G30190:AT1G30190:cotton fiber protein 1Chr13:33254523–33255542 (+)7.971e-12
Glyma.13G219700 hypothetical protein AT1G61280:AT1G61280:Phosphatidylinositol N-acetylglucosaminyltransferase, GPI19/PIG-P subunit__AT2G39445:AT2G39445:Phos… 1Chr13:33268846–33272890 (-)7.971e-12
Glyma.14G148800 hypothetical protein AT1G44760:AT1G44760:Adenine nucleotide alpha hydrolases-like superfamily protein 1Chr14:32154755–32157298 (+)1.638e-11
Glyma.14G201700 hypothetical protein NA 1Chr14:46711634–46715644 (-)4.876e-15
Glyma.14G201800 hypothetical protein AT5G58390:AT5G58390:Peroxidase superfamily protein 1Chr14:46728613–46733836 (+)2.203e-11
Glyma.15G009800 hypothetical protein NA 1Chr15:753771–758859 (-)3.545e-11
Glyma.16G119400 hypothetical protein NA 1Chr16:26684278–26687087 (+)2.758e-11
Glyma.16G210300 hypothetical protein AT1G73340:AT1G73340:Cytochrome P450 superfamily protein 1Chr16:36943073–36948828 (+)5.144e-11
Glyma.16G210400 hypothetical protein AT1G73350:AT1G73350:ankyrin repeat protein 1Chr16:36949685–36953467 (+)5.144e-11
Glyma.17G064000 hypothetical protein AT2G18840:AT2G18840:Integral membrane Yip1 family protein__AT4G30260:AT4G30260:Integral membrane Yip1 family protein 1Chr17:4924830–4930155 (-)3.228e-12
Glyma.17G064200 hypothetical protein AT5G57500:AT5G57500:Galactosyltransferase family protein 1Chr17:4943412–4944357 (-)3.228e-12
Glyma.20G106900 hypothetical protein NA 1Chr20:34962043–34967985 (+)9.935e-13