Soybean mGWAS DBExplore The Genetic Basis Of Soybean Metabolism Glycine max
Overview Annotation GWAS Evidence Associated genes

P52273

Metabolite ID
P52273
Deionized mass
510.0995 Da
Average m/z
511.1075
Average RT
28.5267
Adduct
[M+H]+
Association scope
Overlapping genes only
Associated genes
53
GWAS result file
Available
Open in Soybean Metabolome Repository

Candidate annotations

Search compound candidates by deionized mass and tolerance. Follow compound IDs for database records, or use name searches to explore chemistry and soybean literature. About candidate annotations

GWAS Evidence

Dataset: indexed GWAS records.

Settings

SNP counts, plot highlights, gene associations and downloads use P < 10⁻¹⁰. Changing the threshold updates this page together.

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Associated genes

53 genes linked to SNP records with P < 10⁻¹⁰ in the selected scope. Supporting SNP records are counted per feature–gene pair.

Gene ID Alias Description Arabidopsis ortholog Supporting SNP recordsGene interval (1-based)Minimum P
Glyma.16G209300 hypothetical protein NA 6Chr16:36856833–36863994 (-)3.759e-16
Glyma.06G305700 hypothetical protein AT2G05710:ACO3:aconitase 3 3Chr06:49451501–49461369 (-)1.532e-12
Glyma.08G226000 hypothetical protein AT3G13062:AT3G13062:Polyketide cyclase/dehydrase and lipid transport superfamily protein 3Chr08:18321377–18335864 (-)3.684e-12
Glyma.16G210200 hypothetical protein NA 3Chr16:36933402–36938940 (+)2.605e-12
Glyma.03G209700 hypothetical protein NA 1Chr03:41646792–41648527 (+)3.145e-16
Glyma.04G084200 hypothetical protein AT2G25830:AT2G25830:YebC-like protein 1Chr04:7137351–7146570 (-)1.103e-15
Glyma.04G084300 hypothetical protein AT2G25800:AT2G25800:elongation factor Ts (DUF810) 1Chr04:7153009–7158438 (+)8.718e-12
Glyma.04G084800 hypothetical protein AT5G11630:NOXY2:uncharacterized protein 1Chr04:7187985–7192897 (+)9.366e-11
Glyma.04G086600 hypothetical protein NA 1Chr04:7374806–7380808 (+)1.179e-11
Glyma.05G224700 hypothetical protein NA 1Chr05:40351005–40361888 (+)1.412e-11
Glyma.05G226000 hypothetical protein AT5G19730:AT5G19730:Pectin lyase-like superfamily protein 1Chr05:40458098–40461736 (+)2.863e-11
Glyma.05G237800 hypothetical protein AT1G48790:AMSH1:associated molecule with the SH3 domain of STAM 1 1Chr05:41406807–41413022 (-)9.241e-11
Glyma.06G084800 hypothetical protein NA 1Chr06:6515571–6517480 (-)9.157e-11
Glyma.06G085000 hypothetical protein NA 1Chr06:6524339–6529016 (-)9.157e-11
Glyma.06G085100 hypothetical protein NA 1Chr06:6531956–6537295 (-)9.157e-11
Glyma.06G085200 hypothetical protein NA 1Chr06:6540849–6545557 (+)4.72e-11
Glyma.06G261900 hypothetical protein NA 1Chr06:44875369–44879702 (-)1.995e-11
Glyma.06G305300 hypothetical protein NA 1Chr06:49431590–49435985 (-)1.532e-12
Glyma.06G305600 hypothetical protein NA 1Chr06:49446542–49450635 (-)1.532e-12
Glyma.08G016700 hypothetical protein AT1G63840:AT1G63840:RING/U-box superfamily protein 1Chr08:1330226–1331366 (-)7.312e-11
Glyma.08G226100 hypothetical protein AT3G13060:ECT5:evolutionarily conserved C-terminal region 5 1Chr08:18339384–18347070 (-)3.684e-12
Glyma.08G226400 hypothetical protein AT3G13050:NiaP:Major facilitator superfamily protein 1Chr08:18370226–18374060 (-)3.684e-12
Glyma.09G238200 NIP2-1 putative Si transporter NIP2-1 NA 1Chr09:46029192–46034136 (+)3.569e-11
Glyma.09G253800 hypothetical protein NA 1Chr09:47356240–47357763 (-)7.914e-11
Glyma.09G253900 hypothetical protein NA 1Chr09:47359742–47364806 (-)7.914e-11
Glyma.10G078700 hypothetical protein NA 1Chr10:8882318–8903950 (+)4.273e-13
Glyma.10G079100 hypothetical protein NA 1Chr10:8960669–8962364 (-)4.273e-13
Glyma.10G079800 hypothetical protein NA 1Chr10:9223520–9228511 (-)4.273e-13
Glyma.10G080000 hypothetical protein AT3G11660:NHL1:NDR1/HIN1-like 1__AT3G52470:AT3G52470:Late embryosis abundant (LEA) hydroxyproline-rich glycoprotein fam… 1Chr10:9258476–9260697 (-)4.273e-13
Glyma.10G081200 hypothetical protein NA 1Chr10:9600771–9603988 (-)1.963e-13
Glyma.10G081700 hypothetical protein NA 1Chr10:9752508–9758422 (+)1.038e-14
Glyma.11G048300 hypothetical protein AT4G37640:ACA2:calcium ATPase 2 1Chr11:3601241–3607177 (+)2.219e-13
Glyma.11G127100 hypothetical protein AT1G06040:STO:B-box zinc finger family protein 1Chr11:9656242–9659517 (+)6.071e-11
Glyma.11G127200 hypothetical protein AT3G59480:AT3G59480:pfkB-like carbohydrate kinase family protein 1Chr11:9660434–9665570 (-)6.071e-11
Glyma.11G127300 hypothetical protein AT2G28480:AT2G28480:RNA-binding CRS1 / YhbY (CRM) domain protein 1Chr11:9667918–9671917 (-)6.071e-11
Glyma.12G049300 hypothetical protein NA 1Chr12:3538428–3539170 (-)1.452e-17
Glyma.14G066800 hypothetical protein NA 1Chr14:5511222–5513114 (+)2.058e-11
Glyma.14G191400 hypothetical protein NA 1Chr14:45610980–45612600 (+)1.64e-14
Glyma.16G025300 hypothetical protein NA 1Chr16:2438122–2440528 (-)3.623e-12
Glyma.16G025400 hypothetical protein AT2G46430:CNGC3:cyclic nucleotide gated channel 3 1Chr16:2443212–2450834 (-)3.623e-12
Glyma.16G050500 AFB3B auxin signaling F-box 3 protein AT3G26810:AFB2:auxin signaling F-box 2 1Chr16:4853237–4856710 (+)5.181e-11
Glyma.16G137600 hypothetical protein NA 1Chr16:29468438–29472890 (-)6.577e-11
Glyma.16G139000 hypothetical protein NA 1Chr16:29623540–29631451 (+)1.248e-11
Glyma.16G139500 hypothetical protein AT5G66550:AT5G66550:Maf-like protein 1Chr16:29686243–29690410 (-)8.606e-15
Glyma.16G207900 hypothetical protein AT5G08450:AT5G08450:zinc finger CCCH domain protein 1Chr16:36754888–36763450 (+)1.294e-11
Glyma.16G208500 EIF6 AT3G55620:eIF6A:Translation initiation factor IF6 1Chr16:36806718–36809299 (+)9.196e-13
Glyma.16G209000 hypothetical protein NA 1Chr16:36841786–36845498 (-)1.451e-11
Glyma.16G209900 hypothetical protein NA 1Chr16:36919141–36924601 (+)2.605e-12
Glyma.16G210300 hypothetical protein AT1G73340:AT1G73340:Cytochrome P450 superfamily protein 1Chr16:36943073–36948828 (+)1.646e-14
Glyma.16G210400 hypothetical protein AT1G73350:AT1G73350:ankyrin repeat protein 1Chr16:36949685–36953467 (+)1.646e-14
Glyma.17G004500 hypothetical protein AT5G47800:AT5G47800:Phototropic-responsive NPH3 family protein 1Chr17:444580–451107 (-)8.146e-11
Glyma.17G005900 hypothetical protein AT4G17215:AT4G17215:Pollen Ole e 1 allergen and extensin family protein__AT2G40113:AT2G40113:Pollen Ole e 1 allergen an… 1Chr17:546212–548525 (+)8.146e-11
Glyma.18G227400 hypothetical protein AT2G45720:AT2G45720:ARM repeat superfamily protein 1Chr18:51650951–51654636 (-)7.974e-11