Soybean mGWAS DBExplore The Genetic Basis Of Soybean Metabolism Glycine max
Overview Annotation GWAS Evidence Associated genes

P52247

Metabolite ID
P52247
Deionized mass
615.3975 Da
Average m/z
616.4070
Average RT
28.5041
Adduct
[M+H]+
Association scope
Overlapping genes only
Associated genes
43
GWAS result file
Available
Open in Soybean Metabolome Repository

Candidate annotations

Search compound candidates by deionized mass and tolerance. Follow compound IDs for database records, or use name searches to explore chemistry and soybean literature. About candidate annotations

GWAS Evidence

Dataset: indexed GWAS records.

Settings

SNP counts, plot highlights, gene associations and downloads use P < 10⁻¹⁰. Changing the threshold updates this page together.

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Associated genes

43 genes linked to SNP records with P < 10⁻¹⁰ in the selected scope. Supporting SNP records are counted per feature–gene pair.

Gene ID Alias Description Arabidopsis ortholog Supporting SNP recordsGene interval (1-based)Minimum P
Glyma.06G305700 hypothetical protein AT2G05710:ACO3:aconitase 3 3Chr06:49451501–49461369 (-)4.867e-12
Glyma.14G093100 hypothetical protein NA 2Chr14:8654730–8655892 (-)1.8e-16
Glyma.14G149300 hypothetical protein NA 2Chr14:32235308–32258014 (+)1.955e-12
Glyma.16G031600 hypothetical protein NA 2Chr16:2964569–2985013 (+)3.979e-14
Glyma.05G224700 hypothetical protein NA 1Chr05:40351005–40361888 (+)5.373e-13
Glyma.05G226000 hypothetical protein AT5G19730:AT5G19730:Pectin lyase-like superfamily protein 1Chr05:40458098–40461736 (+)1.533e-12
Glyma.06G129400 hypothetical protein AT5G24300:SS1:Glycogen/starch synthases, ADP-glucose type 1Chr06:10632042–10640023 (+)7.748e-12
Glyma.06G129800 hypothetical protein AT5G53030:AT5G53030:uncharacterized protein 1Chr06:10667029–10669377 (+)1.1e-13
Glyma.06G130100 hypothetical protein AT3G49290:ABIL2:ABL interactor-like protein 2 1Chr06:10695256–10699675 (+)1.1e-13
Glyma.06G130300 hypothetical protein AT5G53080:AT5G53080:Tetratricopeptide repeat (TPR)-like superfamily protein 1Chr06:10709045–10716245 (-)1.248e-13
Glyma.06G150700 hypothetical protein AT1G49180:AT1G49180:protein kinase family protein 1Chr06:12289992–12292323 (+)9.314e-12
Glyma.06G203300 hypothetical protein AT1G18640:PSP:3-phosphoserine phosphatase 1Chr06:19025714–19030363 (+)3.153e-12
Glyma.06G305300 hypothetical protein NA 1Chr06:49431590–49435985 (-)4.867e-12
Glyma.06G305600 hypothetical protein NA 1Chr06:49446542–49450635 (-)4.867e-12
Glyma.08G296900 hypothetical protein NA 1Chr08:41297891–41301852 (+)5.989e-12
Glyma.09G082000 hypothetical protein NA 1Chr09:9638564–9650178 (+)2.651e-11
Glyma.09G084300 hypothetical protein AT2G34680:AIR9:Outer arm dynein light chain 1 protein 1Chr09:10129602–10197250 (-)9.138e-11
Glyma.10G028500 hypothetical protein NA 1Chr10:2476846–2478953 (+)1.755e-12
Glyma.10G028700 hypothetical protein AT1G03090:MCCA:methylcrotonyl-CoA carboxylase alpha chain 1Chr10:2485817–2497071 (-)1.755e-12
Glyma.11G064300 hypothetical protein AT4G36780:BEH2:BES1/BZR1 homolog 2 1Chr11:4849799–4851673 (+)3.571e-11
Glyma.13G161900 PAP25 purple acid phosphatase AT5G34850:PAP26:purple acid phosphatase 26 1Chr13:27748190–27752685 (-)6.099e-11
Glyma.13G180300 hypothetical protein NA 1Chr13:29378090–29379784 (-)2.669e-11
Glyma.13G181100 hypothetical protein AT2G47960:AT2G47960:trafficking protein particle complex subunit-like protein 1Chr13:29426889–29433599 (-)1.394e-14
Glyma.14G094900 hypothetical protein AT1G60960:IRT3:iron regulated transporter 3 1Chr14:8824846–8827258 (-)3.183e-12
Glyma.14G148800 hypothetical protein AT1G44760:AT1G44760:Adenine nucleotide alpha hydrolases-like superfamily protein 1Chr14:32154755–32157298 (+)1.955e-12
Glyma.15G047100 hypothetical protein AT1G71240:AT1G71240:chromosome-partitioning protein, putative (DUF639) 1Chr15:3736217–3746037 (+)5.605e-11
Glyma.15G047800 hypothetical protein AT1G33270:AT1G33270:Acyl transferase/acyl hydrolase/lysophospholipase superfamily protein 1Chr15:3777567–3783739 (+)5.605e-11
Glyma.15G048200 hypothetical protein AT1G25260:AT1G25260:Ribosomal protein L10 family protein 1Chr15:3812816–3815263 (+)6.029e-11
Glyma.15G049800 hypothetical protein NA 1Chr15:3927843–3933656 (-)2.015e-11
Glyma.15G124000 hypothetical protein NA 1Chr15:9845097–9849312 (-)2.889e-11
Glyma.16G020500 hypothetical protein AT4G00870:AT4G00870:basic helix-loop-helix (bHLH) DNA-binding superfamily protein 1Chr16:1877938–1879947 (-)1.231e-11
Glyma.16G024600 hypothetical protein AT1G01320:AT1G01320:Tetratricopeptide repeat (TPR)-like superfamily protein 1Chr16:2374161–2391216 (-)5.019e-11
Glyma.16G025300 hypothetical protein NA 1Chr16:2438122–2440528 (-)1.827e-13
Glyma.16G025400 hypothetical protein AT2G46430:CNGC3:cyclic nucleotide gated channel 3 1Chr16:2443212–2450834 (-)1.827e-13
Glyma.16G032000 hypothetical protein AT4G01270:AT4G01270:RING/U-box superfamily protein 1Chr16:3031286–3036010 (+)1.912e-11
Glyma.16G209300 hypothetical protein NA 1Chr16:36856833–36863994 (-)1.019e-11
Glyma.16G210300 hypothetical protein AT1G73340:AT1G73340:Cytochrome P450 superfamily protein 1Chr16:36943073–36948828 (+)5.249e-11
Glyma.16G210400 hypothetical protein AT1G73350:AT1G73350:ankyrin repeat protein 1Chr16:36949685–36953467 (+)5.249e-11
Glyma.19G012100 hypothetical protein AT3G28150:TBL22:TRICHOME BIREFRINGENCE-LIKE 22 1Chr19:1155711–1161298 (-)1.78e-13
Glyma.19G012300 hypothetical protein NA 1Chr19:1165111–1173031 (-)1.78e-13
Glyma.19G128200 hypothetical protein NA 1Chr19:38739769–38743404 (+)8.842e-11
Glyma.20G019500 hypothetical protein AT1G21065:AT1G21065:secondary thiamine-phosphate synthase enzyme 1Chr20:2039210–2040459 (+)2.453e-12
Glyma.20G019700 hypothetical protein NA 1Chr20:2047020–2050862 (-)4.393e-11