Soybean mGWAS DBExplore The Genetic Basis Of Soybean Metabolism Glycine max
Overview Annotation GWAS Evidence Associated genes

P52235

Metabolite ID
P52235
Deionized mass
512.3129 Da
Average m/z
513.3244
Average RT
28.4900
Adduct
[M+H]+
Association scope
Overlapping genes only
Associated genes
40
GWAS result file
Available
Open in Soybean Metabolome Repository

Candidate annotations

Search compound candidates by deionized mass and tolerance. Follow compound IDs for database records, or use name searches to explore chemistry and soybean literature. About candidate annotations

GWAS Evidence

Dataset: indexed GWAS records.

Settings

SNP counts, plot highlights, gene associations and downloads use P < 10⁻¹⁰. Changing the threshold updates this page together.

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Associated genes

40 genes linked to SNP records with P < 10⁻¹⁰ in the selected scope. Supporting SNP records are counted per feature–gene pair.

Gene ID Alias Description Arabidopsis ortholog Supporting SNP recordsGene interval (1-based)Minimum P
Glyma.17G217900 hypothetical protein NA 3Chr17:36771760–36778616 (-)7.781e-11
Glyma.01G169700 hypothetical protein AT4G36410:UBC17:ubiquitin-conjugating enzyme 17 1Chr01:50715084–50719427 (-)1.724e-11
Glyma.01G169800 hypothetical protein AT4G36400:D2HGDH:FAD-linked oxidases family protein 1Chr01:50726088–50733347 (-)1.724e-11
Glyma.03G018800 hypothetical protein AT2G45680:TCP9:TCP family transcription factor 1Chr03:1875182–1876855 (+)4.957e-11
Glyma.03G019600 hypothetical protein AT2G45640:SAP18:SIN3 associated polypeptide P18 1Chr03:2007617–2009871 (+)2.186e-11
Glyma.04G084300 hypothetical protein AT2G25800:AT2G25800:elongation factor Ts (DUF810) 1Chr04:7153009–7158438 (+)4.714e-11
Glyma.04G084800 hypothetical protein AT5G11630:NOXY2:uncharacterized protein 1Chr04:7187985–7192897 (+)2.319e-12
Glyma.04G112200 hypothetical protein AT5G51750:SBT1.3:subtilase 1.3 1Chr04:12562882–12565006 (+)9.643e-12
Glyma.04G116900 hypothetical protein NA 1Chr04:13696275–13700803 (+)1.219e-11
Glyma.05G127500 hypothetical protein NA 1Chr05:32041345–32049554 (+)1.11e-11
Glyma.05G127800 hypothetical protein AT4G18240:SS4:starch synthase 4 1Chr05:32125404–32138244 (+)3.601e-11
Glyma.05G127900 SAD1 AT5G48870:SAD1:Small nuclear ribonucleoprotein family protein 1Chr05:32139620–32141770 (-)3.601e-11
Glyma.05G128200 hypothetical protein AT5G46330:FLS2:Leucine-rich receptor-like protein kinase family protein 1Chr05:32158034–32162343 (-)3.601e-11
Glyma.05G164700 hypothetical protein NA 1Chr05:35543931–35549196 (-)2.331e-13
Glyma.05G165200 hypothetical protein NA 1Chr05:35586701–35592272 (+)2.675e-12
Glyma.05G165300 hypothetical protein AT1G29350:AT1G29350:RNA polymerase II degradation factor-like protein (DUF1296) 1Chr05:35593651–35600917 (+)2.675e-12
Glyma.05G166000 hypothetical protein NA 1Chr05:35657133–35657621 (-)2.675e-12
Glyma.05G182100 hypothetical protein NA 1Chr05:37003489–37004855 (-)4.175e-11
Glyma.05G182500 hypothetical protein AT5G65210:TGA1:bZIP transcription factor family protein 1Chr05:37029299–37037313 (+)3.336e-11
Glyma.05G219200 hypothetical protein NA 1Chr05:39875137–39879113 (-)4.517e-11
Glyma.05G237800 hypothetical protein AT1G48790:AMSH1:associated molecule with the SH3 domain of STAM 1 1Chr05:41406807–41413022 (-)8.876e-12
Glyma.06G275800 hypothetical protein AT2G30980:SKdZeta:SHAGGY-related protein kinase dZeta 1Chr06:46677753–46682900 (-)7.498e-12
Glyma.06G285200 hypothetical protein AT2G31060:EMB2785:elongation factor family protein 1Chr06:47380397–47390651 (+)8.825e-12
Glyma.08G034500 hypothetical protein NA 1Chr08:2739141–2741745 (+)7.83e-11
Glyma.08G114700 hypothetical protein AT3G13600:AT3G13600:calmodulin-binding family protein 1Chr08:8768854–8772973 (-)4.475e-11
Glyma.09G058900 hypothetical protein NA 1Chr09:5397968–5404650 (-)1.221e-13
Glyma.10G078700 hypothetical protein NA 1Chr10:8882318–8903950 (+)5.277e-11
Glyma.10G079100 hypothetical protein NA 1Chr10:8960669–8962364 (-)5.277e-11
Glyma.10G079800 hypothetical protein NA 1Chr10:9223520–9228511 (-)5.277e-11
Glyma.10G080000 hypothetical protein AT3G11660:NHL1:NDR1/HIN1-like 1__AT3G52470:AT3G52470:Late embryosis abundant (LEA) hydroxyproline-rich glycoprotein fam… 1Chr10:9258476–9260697 (-)5.277e-11
Glyma.10G081200 hypothetical protein NA 1Chr10:9600771–9603988 (-)4.608e-11
Glyma.13G161900 PAP25 purple acid phosphatase AT5G34850:PAP26:purple acid phosphatase 26 1Chr13:27748190–27752685 (-)9.925e-11
Glyma.13G201600 hypothetical protein NA 1Chr13:31521512–31522992 (+)6.903e-11
Glyma.13G203900 hypothetical protein NA 1Chr13:31793697–31796601 (-)5.447e-11
Glyma.15G070100 hypothetical protein AT1G61140:EDA16:SNF2 domain-containing protein / helicase domain-containing protein / zinc finger protein-like protein 1Chr15:5355553–5364428 (+)2.274e-11
Glyma.15G071600 hypothetical protein AT4G21660:AT4G21660:proline-rich spliceosome-associated (PSP) family protein 1Chr15:5481672–5488866 (-)2.274e-11
Glyma.16G027600 hypothetical protein AT1G30240:AT1G30240:proline-, glutamic acid/leucine-rich protein 1Chr16:2697412–2706628 (+)6.765e-11
Glyma.16G028100 hypothetical protein AT3G07570:AT3G07570:Cytochrome b561/ferric reductase transmembrane with DOMON related domain-containing protein 1Chr16:2725294–2733429 (-)6.641e-12
Glyma.17G218400 hypothetical protein NA 1Chr17:36900654–36906204 (+)5.39e-11
Glyma.18G179200 hypothetical protein NA 1Chr18:43222934–43228759 (-)9.166e-11