Soybean mGWAS DBExplore The Genetic Basis Of Soybean Metabolism Glycine max
Overview Annotation GWAS Evidence Associated genes

P52125

Metabolite ID
P52125
Deionized mass
422.1617 Da
Average m/z
423.1690
Average RT
28.4129
Adduct
[M+H]+
Association scope
Overlapping genes only
Associated genes
24
GWAS result file
Available
Open in Soybean Metabolome Repository

Candidate annotations

Search compound candidates by deionized mass and tolerance. Follow compound IDs for database records, or use name searches to explore chemistry and soybean literature. About candidate annotations

GWAS Evidence

Dataset: indexed GWAS records.

Settings

SNP counts, plot highlights, gene associations and downloads use P < 10⁻¹⁰. Changing the threshold updates this page together.

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Associated genes

24 genes linked to SNP records with P < 10⁻¹⁰ in the selected scope. Supporting SNP records are counted per feature–gene pair.

Gene ID Alias Description Arabidopsis ortholog Supporting SNP recordsGene interval (1-based)Minimum P
Glyma.08G123500 hypothetical protein NA 2Chr08:9494946–9505931 (-)4.239e-14
Glyma.01G169700 hypothetical protein AT4G36410:UBC17:ubiquitin-conjugating enzyme 17 1Chr01:50715084–50719427 (-)1.873e-11
Glyma.01G169800 hypothetical protein AT4G36400:D2HGDH:FAD-linked oxidases family protein 1Chr01:50726088–50733347 (-)1.873e-11
Glyma.01G173900 hypothetical protein NA 1Chr01:51092004–51094319 (+)2.178e-11
Glyma.08G122200 hypothetical protein NA 1Chr08:9416766–9429995 (-)4.239e-14
Glyma.08G122300 hypothetical protein AT1G29390:COR314-TM2:cold regulated 314 thylakoid membrane 2 1Chr08:9435391–9437279 (+)4.239e-14
Glyma.08G122500 hypothetical protein NA 1Chr08:9441329–9445315 (-)4.239e-14
Glyma.08G122700 hypothetical protein AT1G29350:AT1G29350:RNA polymerase II degradation factor-like protein (DUF1296) 1Chr08:9452604–9458932 (+)4.239e-14
Glyma.12G108600 hypothetical protein NA 1Chr12:9994609–9997302 (-)3.921e-11
Glyma.12G109500 hypothetical protein AT4G03415:PP2C52:Protein phosphatase 2C family protein 1Chr12:10308026–10314332 (-)3.921e-11
Glyma.12G202400 hypothetical protein AT4G03415:PP2C52:Protein phosphatase 2C family protein 1Chr12:36289704–36295084 (-)4.824e-11
Glyma.13G161900 PAP25 purple acid phosphatase AT5G34850:PAP26:purple acid phosphatase 26 1Chr13:27748190–27752685 (-)1.351e-11
Glyma.16G117400 hypothetical protein NA 1Chr16:26234552–26238233 (-)1.65e-13
Glyma.16G118100 hypothetical protein AT2G17570:cPT1:Undecaprenyl pyrophosphate synthetase family protein 1Chr16:26324650–26336836 (+)6.711e-14
Glyma.16G119400 hypothetical protein NA 1Chr16:26684278–26687087 (+)2.132e-14
Glyma.16G210300 hypothetical protein AT1G73340:AT1G73340:Cytochrome P450 superfamily protein 1Chr16:36943073–36948828 (+)3.719e-11
Glyma.16G210400 hypothetical protein AT1G73350:AT1G73350:ankyrin repeat protein 1Chr16:36949685–36953467 (+)3.719e-11
Glyma.19G000100 hypothetical protein AT2G32630:AT2G32630:Pentatricopeptide repeat (PPR-like) superfamily protein 1Chr19:4309–8135 (+)1.333e-12
Glyma.19G000300 hypothetical protein AT5G23450:LCBK1:long-chain base (LCB) kinase 1 1Chr19:21123–28982 (-)1.333e-12
Glyma.19G000500 hypothetical protein AT5G08400:AT5G08400:structural maintenance of chromosomes-like protein, putative (DUF3531) 1Chr19:54977–59954 (-)1.333e-12
Glyma.19G001200 hypothetical protein NA 1Chr19:92164–94339 (-)6.396e-12
Glyma.19G001500 hypothetical protein AT2G48110:REF4:reduced epidermal fluorescence 4 1Chr19:103399–128601 (-)7.555e-12
Glyma.19G001600 hypothetical protein NA 1Chr19:117544–120775 (+)7.555e-12
Glyma.20G109800 hypothetical protein AT2G35130:AT2G35130:Tetratricopeptide repeat (TPR)-like superfamily protein 1Chr20:35213258–35219502 (+)9.748e-12