P52039
Metabolite ID
P52039
Deionized mass
332.1252 Da
Average m/z
333.1343
Average RT
28.3139
Adduct
[M+H]+
Association scope
Overlapping genes only
Associated genes
95
GWAS result file
Available
Candidate annotations
Search compound candidates by deionized mass and tolerance. Follow compound IDs for database records, or use name searches to explore chemistry and soybean literature. About candidate annotations
GWAS Evidence
Dataset: indexed GWAS records.
SNP counts, plot highlights, gene associations and downloads use P < 10⁻¹⁰. Changing the threshold updates this page together.
Loading GWAS records…
Loading Manhattan plot…
This Q–Q plot describes the indexed records. For downsampled files, it does not represent the distribution across all tested variants. Data coverage
Loading Q–Q plot…
Loading GWAS summary…
Associated genes
95 genes linked to SNP records with P < 10⁻¹⁰ in the selected scope. Supporting SNP records are counted per feature–gene pair.
| Gene ID | Alias | Description | Arabidopsis ortholog | Supporting SNP records | Gene interval (1-based) | Minimum P |
|---|---|---|---|---|---|---|
| Glyma.19G027000 | hypothetical protein | NA | 4 | Chr19:3335896–3343744 (+) | 2.32e-11 | |
| Glyma.12G203700 | hypothetical protein | AT4G28260:AT4G28260:acyl-UDP-N-acetylglucosamine O-acyltransferase | 2 | Chr12:36406747–36413696 (+) | 1.178e-12 | |
| Glyma.12G204400 | hypothetical protein | AT4G03560:TPC1:two-pore channel 1 | 2 | Chr12:36473422–36498915 (+) | 1.067e-12 | |
| Glyma.14G149300 | hypothetical protein | NA | 2 | Chr14:32235308–32258014 (+) | 4.064e-12 | |
| Glyma.19G026600 | hypothetical protein | AT4G13700:PAP23:purple acid phosphatase 23 | 2 | Chr19:3303658–3312907 (-) | 2.32e-11 | |
| Glyma.01G169700 | hypothetical protein | AT4G36410:UBC17:ubiquitin-conjugating enzyme 17 | 1 | Chr01:50715084–50719427 (-) | 3.715e-11 | |
| Glyma.01G169800 | hypothetical protein | AT4G36400:D2HGDH:FAD-linked oxidases family protein | 1 | Chr01:50726088–50733347 (-) | 3.715e-11 | |
| Glyma.02G116900 | hypothetical protein | NA | 1 | Chr02:11394318–11395331 (-) | 4.323e-11 | |
| Glyma.03G023000 | hypothetical protein | AT4G00220:JLO:Lateral organ boundaries (LOB) domain family protein | 1 | Chr03:2423540–2428634 (-) | 1.946e-13 | |
| Glyma.05G124700 | hypothetical protein | NA | 1 | Chr05:31807311–31817648 (+) | 5.885e-11 | |
| Glyma.05G127200 | hypothetical protein | AT1G29790:AT1G29790:S-adenosyl-L-methionine-dependent methyltransferases superfamily protein | 1 | Chr05:32014213–32017922 (-) | 4.994e-11 | |
| Glyma.05G127300 | hypothetical protein | AT1G64520:RPN12a:regulatory particle non-ATPase 12A__AT5G42040:RPN12b:regulatory particle non-ATPase 12B | 1 | Chr05:32021521–32025767 (-) | 3.833e-11 | |
| Glyma.05G127400 | hypothetical protein | AT1G29850:AT1G29850:double-stranded DNA-binding family protein | 1 | Chr05:32030115–32033716 (+) | 3.833e-11 | |
| Glyma.05G127500 | hypothetical protein | NA | 1 | Chr05:32041345–32049554 (+) | 2.41e-14 | |
| Glyma.05G127800 | hypothetical protein | AT4G18240:SS4:starch synthase 4 | 1 | Chr05:32125404–32138244 (+) | 5.856e-14 | |
| Glyma.05G127900 | SAD1 | AT5G48870:SAD1:Small nuclear ribonucleoprotein family protein | 1 | Chr05:32139620–32141770 (-) | 5.856e-14 | |
| Glyma.05G128200 | hypothetical protein | AT5G46330:FLS2:Leucine-rich receptor-like protein kinase family protein | 1 | Chr05:32158034–32162343 (-) | 5.856e-14 | |
| Glyma.05G236400 | hypothetical protein | AT1G23210:GH9B6:glycosyl hydrolase 9B6__AT1G70710:GH9B1:glycosyl hydrolase 9B1 | 1 | Chr05:41274513–41279615 (-) | 1.813e-21 | |
| Glyma.05G236700 | hypothetical protein | AT4G33760:AT4G33760:tRNA synthetase class II (D, K and N) family protein | 1 | Chr05:41301540–41310727 (+) | 2.671e-18 | |
| Glyma.05G237800 | hypothetical protein | AT1G48790:AMSH1:associated molecule with the SH3 domain of STAM 1 | 1 | Chr05:41406807–41413022 (-) | 8.736e-14 | |
| Glyma.07G068000 | hypothetical protein | AT3G61460:BRH1: | 1 | Chr07:6128862–6129740 (+) | 8.514e-11 | |
| Glyma.07G068300 | hypothetical protein | AT5G62980:FOLB2:Dihydroneopterin aldolase__AT3G11750:FOLB1:Dihydroneopterin aldolase | 1 | Chr07:6169729–6172231 (+) | 6.95e-11 | |
| Glyma.07G068400 | hypothetical protein | AT1G29320:AT1G29320:Transducin/WD40 repeat-like superfamily protein | 1 | Chr07:6173172–6180430 (-) | 1.33e-11 | |
| Glyma.07G068600 | hypothetical protein | NA | 1 | Chr07:6192764–6197166 (+) | 1.33e-11 | |
| Glyma.07G068700 | hypothetical protein | AT2G46060:AT2G46060:transmembrane protein-like protein | 1 | Chr07:6200187–6208590 (+) | 6.183e-12 | |
| Glyma.07G068800 | hypothetical protein | NA | 1 | Chr07:6211775–6221107 (-) | 6.183e-12 | |
| Glyma.07G069100 | hypothetical protein | NA | 1 | Chr07:6246145–6250192 (+) | 1.33e-11 | |
| Glyma.07G069400 | hypothetical protein | AT2G46020:BRM:transcription regulatory protein SNF2 | 1 | Chr07:6270176–6283087 (-) | 2.256e-12 | |
| Glyma.07G069600 | hypothetical protein | AT4G00370:ANTR2:Major facilitator superfamily protein | 1 | Chr07:6307073–6313498 (-) | 3.406e-11 | |
| Glyma.07G071800 | hypothetical protein | AT4G20960:PyrD:Cytidine/deoxycytidylate deaminase family protein | 1 | Chr07:6523253–6526707 (+) | 4.562e-11 | |
| Glyma.07G075000 | hypothetical protein | AT5G60990:AT5G60990:DEA(D/H)-box RNA helicase family protein | 1 | Chr07:6821674–6829551 (-) | 9.024e-13 | |
| Glyma.07G075300 | hypothetical protein | NA | 1 | Chr07:6843882–6845602 (-) | 9.024e-13 | |
| Glyma.07G075400 | hypothetical protein | NA | 1 | Chr07:6849233–6853058 (+) | 6.203e-11 | |
| Glyma.07G078300 | hypothetical protein | NA | 1 | Chr07:7150800–7154478 (-) | 7.008e-11 | |
| Glyma.07G243600 | hypothetical protein | NA | 1 | Chr07:42336266–42345196 (+) | 4.992e-13 | |
| Glyma.08G016700 | hypothetical protein | AT1G63840:AT1G63840:RING/U-box superfamily protein | 1 | Chr08:1330226–1331366 (-) | 5.363e-13 | |
| Glyma.08G202000 | hypothetical protein | AT1G52150:ATHB-15:Homeobox-leucine zipper family protein / lipid-binding START domain-containing protein | 1 | Chr08:16375907–16384294 (-) | 3.724e-11 | |
| Glyma.08G204800 | hypothetical protein | AT3G16140:PSAH-1:photosystem I subunit H-1 | 1 | Chr08:16601039–16602646 (+) | 3.455e-13 | |
| Glyma.08G210200 | hypothetical protein | NA | 1 | Chr08:17010526–17012557 (+) | 3.718e-11 | |
| Glyma.08G210300 | hypothetical protein | NA | 1 | Chr08:17011623–17012548 (-) | 3.718e-11 | |
| Glyma.08G211800 | hypothetical protein | NA | 1 | Chr08:17104514–17105442 (-) | 1.351e-12 | |
| Glyma.09G052700 | hypothetical protein | AT1G31120:KUP10:K+ uptake permease 10 | 1 | Chr09:4617652–4626364 (+) | 1.499e-17 | |
| Glyma.10G078700 | hypothetical protein | NA | 1 | Chr10:8882318–8903950 (+) | 4.482e-12 | |
| Glyma.10G079100 | hypothetical protein | NA | 1 | Chr10:8960669–8962364 (-) | 4.482e-12 | |
| Glyma.10G079800 | hypothetical protein | NA | 1 | Chr10:9223520–9228511 (-) | 4.482e-12 | |
| Glyma.10G080000 | hypothetical protein | AT3G11660:NHL1:NDR1/HIN1-like 1__AT3G52470:AT3G52470:Late embryosis abundant (LEA) hydroxyproline-rich glycoprotein fam… | 1 | Chr10:9258476–9260697 (-) | 4.482e-12 | |
| Glyma.10G081200 | hypothetical protein | NA | 1 | Chr10:9600771–9603988 (-) | 3.134e-12 | |
| Glyma.10G081700 | hypothetical protein | NA | 1 | Chr10:9752508–9758422 (+) | 1.407e-12 | |
| Glyma.10G263800 | hypothetical protein | AT1G23010:LPR1:Cupredoxin superfamily protein | 1 | Chr10:48805999–48811533 (-) | 4.316e-11 | |
| Glyma.11G000700 | hypothetical protein | AT4G34150:AT4G34150:Calcium-dependent lipid-binding (CaLB domain) family protein | 1 | Chr11:33497–35198 (+) | 6.34e-11 | |
| Glyma.11G049700 | hypothetical protein | NA | 1 | Chr11:3731308–3734534 (+) | 7.699e-11 | |
| Glyma.11G064300 | hypothetical protein | AT4G36780:BEH2:BES1/BZR1 homolog 2 | 1 | Chr11:4849799–4851673 (+) | 1.007e-12 | |
| Glyma.11G095100 | hypothetical protein | NA | 1 | Chr11:7212438–7214276 (-) | 3.197e-11 | |
| Glyma.11G154900 | PRP3 | NA | 1 | Chr11:12643089–12645488 (+) | 1.79e-11 | |
| Glyma.11G182600 | hypothetical protein | AT5G22400:AT5G22400:Rho GTPase activating protein with PAK-box/P21-Rho-binding domain-containing protein | 1 | Chr11:24998933–25003549 (-) | 6.39e-11 | |
| Glyma.11G182800 | hypothetical protein | AT2G27460:AT2G27460:sec23/sec24 transport family protein | 1 | Chr11:25044939–25052549 (+) | 1.614e-12 | |
| Glyma.12G114500 | hypothetical protein | AT4G22930:PYR4:pyrimidin 4 | 1 | Chr12:11396572–11400825 (-) | 3.434e-11 | |
| Glyma.12G114900 | hypothetical protein | NA | 1 | Chr12:11457987–11462951 (-) | 3.434e-11 | |
| Glyma.12G203300 | hypothetical protein | AT4G03430:EMB2770:pre-mRNA splicing factor-like protein | 1 | Chr12:36371465–36377700 (-) | 4.745e-12 | |
| Glyma.12G203600 | EXPB8 | AT2G20750:EXPB1:expansin B1 | 1 | Chr12:36390283–36394245 (-) | 1.436e-12 | |
| Glyma.12G204000 | hypothetical protein | AT1G03687:AT1G03687:DTW domain-containing protein | 1 | Chr12:36428558–36432835 (+) | 1.067e-12 | |
| Glyma.12G204600 | hypothetical protein | AT4G28310:AT4G28310:microtubule-associated protein | 1 | Chr12:36504234–36505245 (+) | 1.974e-11 | |
| Glyma.13G135500 | hypothetical protein | AT5G02780:GSTL1:glutathione transferase lambda 1 | 1 | Chr13:24798567–24801567 (+) | 3.59e-11 | |
| Glyma.13G135700 | hypothetical protein | NA | 1 | Chr13:24812720–24818735 (+) | 3.59e-11 | |
| Glyma.13G135800 | hypothetical protein | AT5G02800:CDL1:Protein kinase superfamily protein | 1 | Chr13:24820151–24823999 (-) | 3.59e-11 | |
| Glyma.13G156000 | hypothetical protein | AT2G07560:HA6:H[+]-ATPase 6__AT3G42640:HA8:H[+]-ATPase 8 | 1 | Chr13:27104338–27109785 (+) | 7.648e-12 | |
| Glyma.13G201600 | hypothetical protein | NA | 1 | Chr13:31521512–31522992 (+) | 9.606e-11 | |
| Glyma.13G237900 | hypothetical protein | NA | 1 | Chr13:34809361–34816888 (-) | 3.258e-11 | |
| Glyma.14G069500 | hypothetical protein | AT5G37810:NIP4;1:NOD26-like intrinsic protein 4;1 | 1 | Chr14:5822246–5825628 (-) | 7.779e-13 | |
| Glyma.14G094900 | hypothetical protein | AT1G60960:IRT3:iron regulated transporter 3 | 1 | Chr14:8824846–8827258 (-) | 1.165e-11 | |
| Glyma.14G148800 | hypothetical protein | AT1G44760:AT1G44760:Adenine nucleotide alpha hydrolases-like superfamily protein | 1 | Chr14:32154755–32157298 (+) | 4.064e-12 | |
| Glyma.14G204400 | hypothetical protein | AT2G30470:HSI2:B3 domain-containing transcription repressor VAL1 | 1 | Chr14:46936057–46943868 (-) | 3.185e-11 | |
| Glyma.14G213400 | hypothetical protein | NA | 1 | Chr14:47844823–47847028 (+) | 5.748e-13 | |
| Glyma.15G035600 | hypothetical protein | AT3G46740:TOC75-III:translocon at the outer envelope membrane of chloroplasts 75-III | 1 | Chr15:2830678–2835534 (+) | 2.676e-12 | |
| Glyma.15G121100 | hypothetical protein | NA | 1 | Chr15:9567797–9570248 (+) | 1.384e-11 | |
| Glyma.15G121300 | hypothetical protein | AT5G47760:PGLP2:2-phosphoglycolate phosphatase 2 | 1 | Chr15:9584685–9590201 (-) | 1.692e-11 | |
| Glyma.15G121500 | hypothetical protein | AT1G03370:AT1G03370:C2 calcium/lipid-binding and GRAM domain containing protein | 1 | Chr15:9602794–9615281 (+) | 1.384e-11 | |
| Glyma.15G121800 | hypothetical protein | NA | 1 | Chr15:9643746–9648073 (+) | 1.384e-11 | |
| Glyma.15G124000 | hypothetical protein | NA | 1 | Chr15:9845097–9849312 (-) | 5.036e-11 | |
| Glyma.15G124500 | MLO-like protein 13 | AT4G24250:MLO13:Seven transmembrane MLO family protein | 1 | Chr15:9888761–9894068 (-) | 3.686e-12 | |
| Glyma.16G117400 | hypothetical protein | NA | 1 | Chr16:26234552–26238233 (-) | 7.398e-11 | |
| Glyma.16G119400 | hypothetical protein | NA | 1 | Chr16:26684278–26687087 (+) | 6.244e-11 | |
| Glyma.16G172500 | hypothetical protein | AT3G59140:ABCC10:multidrug resistance-associated protein 14 | 1 | Chr16:33322352–33330062 (+) | 2.072e-13 | |
| Glyma.17G099300 | hypothetical protein | AT3G47610:AT3G47610:transcription regulator/ zinc ion binding protein | 1 | Chr17:7838198–7840795 (-) | 5.742e-12 | |
| Glyma.18G052100 | hypothetical protein | AT2G30470:HSI2:B3 domain-containing transcription repressor VAL1 | 1 | Chr18:4503897–4512049 (+) | 5.666e-11 | |
| Glyma.18G112600 | hypothetical protein | NA | 1 | Chr18:13398219–13405422 (+) | 2.536e-11 | |
| Glyma.19G005200 | hypothetical protein | AT3G27640:AT3G27640:Transducin/WD40 repeat-like superfamily protein | 1 | Chr19:472201–476152 (-) | 1.633e-11 | |
| Glyma.19G006900 | hypothetical protein | AT5G14700:AT5G14700:NAD(P)-binding Rossmann-fold superfamily protein | 1 | Chr19:686556–692466 (-) | 9.841e-12 | |
| Glyma.19G128100 | hypothetical protein | NA | 1 | Chr19:38728037–38732422 (+) | 5.421e-12 | |
| Glyma.19G128200 | hypothetical protein | NA | 1 | Chr19:38739769–38743404 (+) | 5.318e-16 | |
| Glyma.19G218100 | hypothetical protein | AT1G02390:GPAT2:glycerol-3-phosphate acyltransferase 2 | 1 | Chr19:47082133–47085750 (+) | 6.962e-11 | |
| Glyma.19G247800 | hypothetical protein | NA | 1 | Chr19:49385792–49388122 (-) | 3.933e-14 | |
| Glyma.20G019500 | hypothetical protein | AT1G21065:AT1G21065:secondary thiamine-phosphate synthase enzyme | 1 | Chr20:2039210–2040459 (+) | 3.122e-11 | |
| Glyma.20G019800 | hypothetical protein | AT1G49350:AT1G49350:pfkB-like carbohydrate kinase family protein | 1 | Chr20:2051817–2057262 (+) | 5.111e-11 | |
| Glyma.20G107200 | hypothetical protein | AT4G38540:AT4G38540:FAD/NAD(P)-binding oxidoreductase family protein | 1 | Chr20:34984922–34988496 (+) | 4.69e-13 |