Soybean mGWAS DBExplore The Genetic Basis Of Soybean Metabolism Glycine max
Overview Annotation GWAS Evidence Associated genes

P52025

Metabolite ID
P52025
Deionized mass
380.2275 Da
Average m/z
381.2344
Average RT
28.2903
Adduct
[M+H]+
Association scope
Overlapping genes only
Associated genes
61
GWAS result file
Available
Open in Soybean Metabolome Repository

Candidate annotations

Search compound candidates by deionized mass and tolerance. Follow compound IDs for database records, or use name searches to explore chemistry and soybean literature. About candidate annotations

GWAS Evidence

Dataset: indexed GWAS records.

Settings

SNP counts, plot highlights, gene associations and downloads use P < 10⁻¹⁰. Changing the threshold updates this page together.

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Associated genes

61 genes linked to SNP records with P < 10⁻¹⁰ in the selected scope. Supporting SNP records are counted per feature–gene pair.

Gene ID Alias Description Arabidopsis ortholog Supporting SNP recordsGene interval (1-based)Minimum P
Glyma.16G209300 hypothetical protein NA 4Chr16:36856833–36863994 (-)9.421e-14
Glyma.01G045600 hypothetical protein NA 3Chr01:5242432–5245038 (-)1.732e-12
Glyma.16G210200 hypothetical protein NA 3Chr16:36933402–36938940 (+)9.826e-11
Glyma.04G084800 hypothetical protein AT5G11630:NOXY2:uncharacterized protein 2Chr04:7187985–7192897 (+)9.156e-12
Glyma.01G045400 hypothetical protein NA 1Chr01:5140834–5144197 (-)7.66e-11
Glyma.01G045700 hypothetical protein AT1G69680:AT1G69680:ran guanine nucleotide release factor, putative (Mog1/PsbP/DUF1795-like photosystem II reaction cen… 1Chr01:5265956–5271379 (-)2.16e-12
Glyma.02G126300 hypothetical protein NA 1Chr02:12670653–12677305 (+)1.116e-11
Glyma.02G126400 hypothetical protein NA 1Chr02:12678071–12683492 (+)1.116e-11
Glyma.02G126800 hypothetical protein AT1G13580:LAG13:LAG1 longevity assurance-like protein__AT3G25540:LAG1:TRAM, LAG1 and CLN8 (TLC) lipid-sensing domain co… 1Chr02:12771578–12777488 (+)1.116e-11
Glyma.02G127400 hypothetical protein AT1G26190:AT1G26190:Phosphoribulokinase / Uridine kinase family 1Chr02:12849745–12869066 (+)1.116e-11
Glyma.02G127600 hypothetical protein NA 1Chr02:12976382–12983547 (+)1.116e-11
Glyma.02G133800 hypothetical protein AT1G49660:CXE5:carboxyesterase 5 1Chr02:13850366–13851962 (-)1.944e-11
Glyma.02G151500 hypothetical protein AT2G47990:SWA1:transducin family protein / WD-40 repeat family protein 1Chr02:15586732–15588774 (+)3.148e-12
Glyma.03G023000 hypothetical protein AT4G00220:JLO:Lateral organ boundaries (LOB) domain family protein 1Chr03:2423540–2428634 (-)3.156e-13
Glyma.03G124500 hypothetical protein NA 1Chr03:33758928–33762195 (+)1.045e-15
Glyma.04G014300 hypothetical protein AT1G20880:AT1G20880:RNA-binding (RRM/RBD/RNP motifs) family protein 1Chr04:1101709–1106543 (+)1.083e-11
Glyma.04G014600 hypothetical protein NA 1Chr04:1119108–1123175 (+)1.083e-11
Glyma.04G084300 hypothetical protein AT2G25800:AT2G25800:elongation factor Ts (DUF810) 1Chr04:7153009–7158438 (+)4.891e-13
Glyma.04G084600 hypothetical protein NA 1Chr04:7171949–7173688 (+)1.151e-11
Glyma.04G086600 hypothetical protein NA 1Chr04:7374806–7380808 (+)5.073e-12
Glyma.05G236400 hypothetical protein AT1G23210:GH9B6:glycosyl hydrolase 9B6__AT1G70710:GH9B1:glycosyl hydrolase 9B1 1Chr05:41274513–41279615 (-)1.153e-15
Glyma.05G236700 hypothetical protein AT4G33760:AT4G33760:tRNA synthetase class II (D, K and N) family protein 1Chr05:41301540–41310727 (+)3.415e-21
Glyma.06G291600 hypothetical protein AT4G22930:PYR4:pyrimidin 4 1Chr06:48024204–48029614 (+)3.546e-11
Glyma.06G292000 hypothetical protein NA 1Chr06:48081084–48084476 (-)3.546e-11
Glyma.06G292100 hypothetical protein NA 1Chr06:48095366–48097378 (+)3.546e-11
Glyma.08G016700 hypothetical protein AT1G63840:AT1G63840:RING/U-box superfamily protein 1Chr08:1330226–1331366 (-)4.976e-11
Glyma.09G133800 hypothetical protein NA 1Chr09:33268295–33269240 (+)1.918e-11
Glyma.11G183200 hypothetical protein AT2G27500:AT2G27500:Glycosyl hydrolase superfamily protein 1Chr11:25070908–25075185 (-)6.602e-11
Glyma.12G108600 hypothetical protein NA 1Chr12:9994609–9997302 (-)1.68e-13
Glyma.12G109500 hypothetical protein AT4G03415:PP2C52:Protein phosphatase 2C family protein 1Chr12:10308026–10314332 (-)1.68e-13
Glyma.12G114500 hypothetical protein AT4G22930:PYR4:pyrimidin 4 1Chr12:11396572–11400825 (-)1.932e-16
Glyma.12G114900 hypothetical protein NA 1Chr12:11457987–11462951 (-)1.932e-16
Glyma.12G183400 hypothetical protein NA 1Chr12:34427496–34440319 (-)6.013e-12
Glyma.12G212300 hypothetical protein AT3G58710:WRKY69:WRKY DNA-binding protein 69 1Chr12:37131153–37134096 (+)5.913e-12
Glyma.12G212500 hypothetical protein NA 1Chr12:37150677–37158587 (+)5.859e-11
Glyma.12G212800 hypothetical protein NA 1Chr12:37179924–37185798 (-)1.231e-12
Glyma.12G213100 hypothetical protein AT3G20560:PDIL5-3:PDI-like 5-3__AT4G27080:PDIL5-4:PDI-like 5-4 1Chr12:37207799–37215685 (+)5.859e-11
Glyma.12G213300 hypothetical protein AT4G27100:AT4G27100:Ypt/Rab-GAP domain of gyp1p superfamily protein 1Chr12:37219675–37228348 (+)5.859e-11
Glyma.13G062700 hypothetical protein AT3G01180:SS2:starch synthase 2 1Chr13:16045152–16059846 (-)6.965e-12
Glyma.13G062800 hypothetical protein AT5G48600:SMC3:structural maintenance of chromosome 3 1Chr13:16067222–16078901 (-)6.965e-12
Glyma.13G135300 hypothetical protein NA 1Chr13:24770681–24773826 (+)7.867e-11
Glyma.13G135400 hypothetical protein AT5G12130:PDE149:integral membrane TerC family protein 1Chr13:24786242–24791938 (+)7.867e-11
Glyma.13G135700 hypothetical protein NA 1Chr13:24812720–24818735 (+)7.867e-11
Glyma.13G135800 hypothetical protein AT5G02800:CDL1:Protein kinase superfamily protein 1Chr13:24820151–24823999 (-)7.867e-11
Glyma.13G197700 hypothetical protein AT5G38730:AT5G38730:Tetratricopeptide repeat (TPR)-like superfamily protein 1Chr13:31174654–31180595 (-)5.156e-11
Glyma.14G094200 hypothetical protein AT5G11840:AT5G11840:YCF36, putative (DUF1230) 1Chr14:8770378–8774149 (-)4.239e-11
Glyma.14G094300 hypothetical protein NA 1Chr14:8771316–8772515 (+)4.239e-11
Glyma.15G121100 hypothetical protein NA 1Chr15:9567797–9570248 (+)3.475e-11
Glyma.15G121300 hypothetical protein AT5G47760:PGLP2:2-phosphoglycolate phosphatase 2 1Chr15:9584685–9590201 (-)6.363e-11
Glyma.15G121500 hypothetical protein AT1G03370:AT1G03370:C2 calcium/lipid-binding and GRAM domain containing protein 1Chr15:9602794–9615281 (+)3.475e-11
Glyma.15G121800 hypothetical protein NA 1Chr15:9643746–9648073 (+)3.475e-11
Glyma.15G124000 hypothetical protein NA 1Chr15:9845097–9849312 (-)4.23e-11
Glyma.15G124500 MLO-like protein 13 AT4G24250:MLO13:Seven transmembrane MLO family protein 1Chr15:9888761–9894068 (-)8.125e-13
Glyma.16G050500 AFB3B auxin signaling F-box 3 protein AT3G26810:AFB2:auxin signaling F-box 2 1Chr16:4853237–4856710 (+)2.332e-12
Glyma.16G139500 hypothetical protein AT5G66550:AT5G66550:Maf-like protein 1Chr16:29686243–29690410 (-)2.643e-12
Glyma.16G161500 hypothetical protein NA 1Chr16:32076715–32092322 (-)9.425e-13
Glyma.16G208500 EIF6 AT3G55620:eIF6A:Translation initiation factor IF6 1Chr16:36806718–36809299 (+)3.094e-11
Glyma.16G209900 hypothetical protein NA 1Chr16:36919141–36924601 (+)9.826e-11
Glyma.16G210300 hypothetical protein AT1G73340:AT1G73340:Cytochrome P450 superfamily protein 1Chr16:36943073–36948828 (+)5.239e-13
Glyma.16G210400 hypothetical protein AT1G73350:AT1G73350:ankyrin repeat protein 1Chr16:36949685–36953467 (+)5.239e-13
Glyma.17G215500 KNAT5 NA 1Chr17:36212363–36217688 (-)1.851e-11