Soybean mGWAS DBExplore The Genetic Basis Of Soybean Metabolism Glycine max
Overview Annotation GWAS Evidence Associated genes

P51964

Metabolite ID
P51964
Deionized mass
534.3143 Da
Average m/z
535.3219
Average RT
28.2438
Adduct
[M+H]+
Association scope
Overlapping genes only
Associated genes
37
GWAS result file
Available
Open in Soybean Metabolome Repository

Candidate annotations

Search compound candidates by deionized mass and tolerance. Follow compound IDs for database records, or use name searches to explore chemistry and soybean literature. About candidate annotations

GWAS Evidence

Dataset: indexed GWAS records.

Settings

SNP counts, plot highlights, gene associations and downloads use P < 10⁻¹⁰. Changing the threshold updates this page together.

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Associated genes

37 genes linked to SNP records with P < 10⁻¹⁰ in the selected scope. Supporting SNP records are counted per feature–gene pair.

Gene ID Alias Description Arabidopsis ortholog Supporting SNP recordsGene interval (1-based)Minimum P
Glyma.01G166400 hypothetical protein AT4G36080:AT4G36080:phosphotransferases/inositol or phosphatidylinositol kinase 4Chr01:50404781–50436297 (-)4.061e-11
Glyma.19G027000 hypothetical protein NA 4Chr19:3335896–3343744 (+)9.461e-11
Glyma.03G023000 hypothetical protein AT4G00220:JLO:Lateral organ boundaries (LOB) domain family protein 3Chr03:2423540–2428634 (-)8.302e-15
Glyma.02G205400 hypothetical protein AT5G57880:MPS1:multipolar spindle 1 2Chr02:39040135–39043181 (-)1.734e-15
Glyma.03G120100 hypothetical protein AT5G26120:ASD2:alpha-L-arabinofuranosidase 2 2Chr03:33174618–33180955 (+)9.732e-13
Glyma.16G031600 hypothetical protein NA 2Chr16:2964569–2985013 (+)3.258e-13
Glyma.19G026600 hypothetical protein AT4G13700:PAP23:purple acid phosphatase 23 2Chr19:3303658–3312907 (-)9.461e-11
Glyma.01G166300 hypothetical protein AT3G51230:AT3G51230:chalcone-flavanone isomerase family protein 1Chr01:50402188–50404181 (+)5.307e-11
Glyma.01G166600 hypothetical protein AT2G18000:TAF14:TBP-associated factor 14 1Chr01:50443699–50446896 (-)5.307e-11
Glyma.02G205500 hypothetical protein AT5G57870:eIFiso4G1:MIF4G domain-containing protein / MA3 domain-containing protein 1Chr02:39045905–39052694 (-)1.388e-11
Glyma.03G021700 hypothetical protein AT2G45490:AUR3:ataurora3 1Chr03:2248429–2251737 (+)4.492e-11
Glyma.03G022100 hypothetical protein AT4G32430:AT4G32430:Pentatricopeptide repeat (PPR) superfamily protein 1Chr03:2301675–2307263 (+)8.633e-13
Glyma.03G022500 hypothetical protein NA 1Chr03:2339702–2345448 (+)4.612e-11
Glyma.03G022900 hypothetical protein NA 1Chr03:2409690–2420328 (-)2.448e-11
Glyma.03G031700 hypothetical protein AT1G79600:AT1G79600:Protein kinase superfamily protein 1Chr03:3567906–3572939 (-)7.112e-11
Glyma.05G237800 hypothetical protein AT1G48790:AMSH1:associated molecule with the SH3 domain of STAM 1 1Chr05:41406807–41413022 (-)7.142e-13
Glyma.06G201700 hypothetical protein NA 1Chr06:18577883–18617874 (+)2.469e-12
Glyma.08G122000 hypothetical protein AT5G46400:PRP39-2:Tetratricopeptide repeat (TPR)-like superfamily protein 1Chr08:9397717–9410004 (+)2.759e-12
Glyma.09G052700 hypothetical protein AT1G31120:KUP10:K+ uptake permease 10 1Chr09:4617652–4626364 (+)5.159e-11
Glyma.09G082000 hypothetical protein NA 1Chr09:9638564–9650178 (+)8.6e-13
Glyma.09G084300 hypothetical protein AT2G34680:AIR9:Outer arm dynein light chain 1 protein 1Chr09:10129602–10197250 (-)1.156e-11
Glyma.09G210700 hypothetical protein AT1G31970:STRS1:DEA(D/H)-box RNA helicase family protein 1Chr09:43466944–43471858 (-)2.158e-11
Glyma.10G217500 hypothetical protein AT1G71980:AT1G71980:Protease-associated (PA) RING/U-box zinc finger family protein__AT1G22670:AT1G22670:Protease-associ… 1Chr10:44919091–44924920 (-)7.431e-11
Glyma.10G217800 hypothetical protein NA 1Chr10:44944812–44948539 (-)7.431e-11
Glyma.10G217900 SUT1 sucrose transporter AT1G22710:SUC2:sucrose-proton symporter 2__AT1G66570:SUC7:sucrose-proton symporter 7__AT2G14670:SUC8:sucrose-proton sym… 1Chr10:44953802–44957372 (-)7.431e-11
Glyma.11G241000 hypothetical protein AT4G39960:AT4G39960:Molecular chaperone Hsp40/DnaJ family protein 1Chr11:33526493–33531210 (+)5.089e-14
Glyma.11G241400 hypothetical protein AT4G40000:AT4G40000:S-adenosyl-L-methionine-dependent methyltransferases superfamily protein 1Chr11:33556332–33563163 (-)2.925e-13
Glyma.11G241900 hypothetical protein NA 1Chr11:33589346–33594428 (-)2.925e-13
Glyma.12G108600 hypothetical protein NA 1Chr12:9994609–9997302 (-)3.426e-12
Glyma.12G109500 hypothetical protein AT4G03415:PP2C52:Protein phosphatase 2C family protein 1Chr12:10308026–10314332 (-)3.426e-12
Glyma.12G204000 hypothetical protein AT1G03687:AT1G03687:DTW domain-containing protein 1Chr12:36428558–36432835 (+)1.653e-11
Glyma.12G204400 hypothetical protein AT4G03560:TPC1:two-pore channel 1 1Chr12:36473422–36498915 (+)1.653e-11
Glyma.13G181100 hypothetical protein AT2G47960:AT2G47960:trafficking protein particle complex subunit-like protein 1Chr13:29426889–29433599 (-)3.902e-12
Glyma.16G028100 hypothetical protein AT3G07570:AT3G07570:Cytochrome b561/ferric reductase transmembrane with DOMON related domain-containing protein 1Chr16:2725294–2733429 (-)4.998e-12
Glyma.16G139500 hypothetical protein AT5G66550:AT5G66550:Maf-like protein 1Chr16:29686243–29690410 (-)5.437e-11
Glyma.16G142300 hypothetical protein AT4G36850:AT4G36850:PQ-loop repeat family protein / transmembrane family protein 1Chr16:30086178–30091466 (-)1.878e-11
Glyma.20G107700 hypothetical protein AT2G16860:AT2G16860:GCIP-interacting family protein 1Chr20:35033414–35036538 (+)8.151e-11