Soybean mGWAS DBExplore The Genetic Basis Of Soybean Metabolism Glycine max
Overview Annotation GWAS Evidence Associated genes

P51854

Metabolite ID
P51854
Deionized mass
301.1341 Da
Average m/z
302.1419
Average RT
28.1365
Adduct
[M+H]+
Association scope
Overlapping genes only
Associated genes
50
GWAS result file
Available
Open in Soybean Metabolome Repository

Candidate annotations

Search compound candidates by deionized mass and tolerance. Follow compound IDs for database records, or use name searches to explore chemistry and soybean literature. About candidate annotations

GWAS Evidence

Dataset: indexed GWAS records.

Settings

SNP counts, plot highlights, gene associations and downloads use P < 10⁻¹⁰. Changing the threshold updates this page together.

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Associated genes

50 genes linked to SNP records with P < 10⁻¹⁰ in the selected scope. Supporting SNP records are counted per feature–gene pair.

Gene ID Alias Description Arabidopsis ortholog Supporting SNP recordsGene interval (1-based)Minimum P
Glyma.04G096800 hypothetical protein AT4G24460:CLT2:CRT (chloroquine-resistance transporter)-like transporter 2 4Chr04:8747857–8778229 (-)6.428e-11
Glyma.03G035500 hypothetical protein NA 2Chr03:4289118–4294184 (+)3.432e-11
Glyma.08G123500 hypothetical protein NA 2Chr08:9494946–9505931 (-)4.457e-12
Glyma.14G149300 hypothetical protein NA 2Chr14:32235308–32258014 (+)3.734e-11
Glyma.16G118100 hypothetical protein AT2G17570:cPT1:Undecaprenyl pyrophosphate synthetase family protein 2Chr16:26324650–26336836 (+)4.639e-14
Glyma.16G182600 hypothetical protein AT5G52400:CYP715A1:cytochrome P450, family 715, subfamily A, polypeptide 1 2Chr16:34364037–34367765 (-)9.302e-13
Glyma.02G060700 hypothetical protein AT5G66600:AT5G66600:electron transporter, putative (Protein of unknown function, DUF547) 1Chr02:5508103–5512617 (+)2.721e-11
Glyma.03G023000 hypothetical protein AT4G00220:JLO:Lateral organ boundaries (LOB) domain family protein 1Chr03:2423540–2428634 (-)1.041e-11
Glyma.03G035400 hypothetical protein AT3G42630:AT3G42630:Pentatricopeptide repeat (PPR) superfamily protein 1Chr03:4282985–4285957 (-)1.243e-11
Glyma.04G096500 hypothetical protein NA 1Chr04:8664088–8675605 (+)6.428e-11
Glyma.04G096600 hypothetical protein AT1G58250:SAB:HYPERSENSITIVE TO PI STARVATION 4 1Chr04:8693806–8724007 (-)6.428e-11
Glyma.04G096900 hypothetical protein NA 1Chr04:8778953–8796458 (-)6.428e-11
Glyma.05G130600 hypothetical protein AT1G30040:GA2OX2:gibberellin 2-oxidase 1Chr05:32352085–32354865 (+)1.296e-12
Glyma.05G130700 hypothetical protein AT2G34560:CCP1:P-loop containing nucleoside triphosphate hydrolases superfamily protein 1Chr05:32376592–32384905 (+)2.847e-11
Glyma.05G131200 hypothetical protein AT5G58230:MSI1:Transducin/WD40 repeat-like superfamily protein 1Chr05:32421116–32425198 (-)3.152e-15
Glyma.05G236700 hypothetical protein AT4G33760:AT4G33760:tRNA synthetase class II (D, K and N) family protein 1Chr05:41301540–41310727 (+)1.632e-11
Glyma.06G112300 hypothetical protein AT1G44780:AT1G44780:translation initiation factor__AT4G08310:AT4G08310:DNA ligase 1Chr06:9113982–9118848 (-)3.296e-12
Glyma.06G112600 hypothetical protein AT1G77620:AT1G77620:P-loop containing nucleoside triphosphate hydrolases superfamily protein 1Chr06:9134358–9144986 (+)3.296e-12
Glyma.06G112700 hypothetical protein AT1G44760:AT1G44760:Adenine nucleotide alpha hydrolases-like superfamily protein 1Chr06:9156973–9158659 (+)3.296e-12
Glyma.06G313500 hypothetical protein NA 1Chr06:50191600–50203098 (-)3.806e-12
Glyma.08G122200 hypothetical protein NA 1Chr08:9416766–9429995 (-)4.457e-12
Glyma.08G122300 hypothetical protein AT1G29390:COR314-TM2:cold regulated 314 thylakoid membrane 2 1Chr08:9435391–9437279 (+)4.457e-12
Glyma.08G122500 hypothetical protein NA 1Chr08:9441329–9445315 (-)4.457e-12
Glyma.08G122700 hypothetical protein AT1G29350:AT1G29350:RNA polymerase II degradation factor-like protein (DUF1296) 1Chr08:9452604–9458932 (+)4.457e-12
Glyma.09G052700 hypothetical protein AT1G31120:KUP10:K+ uptake permease 10 1Chr09:4617652–4626364 (+)6.563e-13
Glyma.09G082000 hypothetical protein NA 1Chr09:9638564–9650178 (+)9.629e-11
Glyma.09G252100 hypothetical protein AT1G79790:FHY1:Haloacid dehalogenase-like hydrolase (HAD) superfamily protein 1Chr09:47245185–47248478 (+)1.58e-11
Glyma.09G252300 hypothetical protein AT5G16520:AT5G16520:uncharacterized protein 1Chr09:47254519–47261787 (-)7.133e-11
Glyma.09G252400 hypothetical protein NA 1Chr09:47260143–47260334 (+)7.133e-11
Glyma.10G263800 hypothetical protein AT1G23010:LPR1:Cupredoxin superfamily protein 1Chr10:48805999–48811533 (-)6.869e-11
Glyma.11G154900 PRP3 NA 1Chr11:12643089–12645488 (+)9.926e-11
Glyma.12G054500 hypothetical protein NA 1Chr12:3938604–3943724 (+)8.342e-11
Glyma.12G054700 hypothetical protein AT3G45140:LOX2:lipoxygenase 2 1Chr12:3949453–3957386 (-)4.824e-11
Glyma.12G055100 hypothetical protein AT5G12900:AT5G12900:DNA double-strand break repair RAD50 ATPase 1Chr12:3988442–3991287 (-)8.671e-11
Glyma.12G202200 hypothetical protein AT2G20860:LIP1:lipoic acid synthase 1 1Chr12:36267599–36271584 (+)2.645e-12
Glyma.12G202300 hypothetical protein NA 1Chr12:36275438–36276838 (+)2.645e-12
Glyma.12G202400 hypothetical protein AT4G03415:PP2C52:Protein phosphatase 2C family protein 1Chr12:36289704–36295084 (-)3.594e-13
Glyma.14G068500 hypothetical protein NA 1Chr14:5741909–5745574 (-)4.708e-11
Glyma.14G148800 hypothetical protein AT1G44760:AT1G44760:Adenine nucleotide alpha hydrolases-like superfamily protein 1Chr14:32154755–32157298 (+)3.734e-11
Glyma.15G124500 MLO-like protein 13 AT4G24250:MLO13:Seven transmembrane MLO family protein 1Chr15:9888761–9894068 (-)3.832e-12
Glyma.15G140400 hypothetical protein NA 1Chr15:11495189–11495691 (+)6.025e-11
Glyma.15G256300 hypothetical protein NA 1Chr15:48546007–48547401 (-)1.655e-12
Glyma.16G117400 hypothetical protein NA 1Chr16:26234552–26238233 (-)5.546e-14
Glyma.16G119300 hypothetical protein NA 1Chr16:26643902–26644416 (+)3.16e-12
Glyma.16G119400 hypothetical protein NA 1Chr16:26684278–26687087 (+)1.953e-14
Glyma.16G189000 hypothetical protein NA 1Chr16:35160485–35167548 (-)9.175e-12
Glyma.16G210300 hypothetical protein AT1G73340:AT1G73340:Cytochrome P450 superfamily protein 1Chr16:36943073–36948828 (+)3.083e-11
Glyma.16G210400 hypothetical protein AT1G73350:AT1G73350:ankyrin repeat protein 1Chr16:36949685–36953467 (+)3.083e-11
Glyma.17G092800 hypothetical protein NA 1Chr17:7253511–7255621 (-)3.616e-12
Glyma.18G196200 hypothetical protein AT3G09100:AT3G09100:mRNA capping enzyme family protein 1Chr18:47102746–47129707 (+)3.077e-11