Soybean mGWAS DBExplore The Genetic Basis Of Soybean Metabolism Glycine max
Overview Annotation GWAS Evidence Associated genes

P51802

Metabolite ID
P51802
Deionized mass
538.3801 Da
Average m/z
539.3888
Average RT
28.0920
Adduct
[M+H]+
Association scope
Overlapping genes only
Associated genes
51
GWAS result file
Available
Open in Soybean Metabolome Repository

Candidate annotations

Search compound candidates by deionized mass and tolerance. Follow compound IDs for database records, or use name searches to explore chemistry and soybean literature. About candidate annotations

GWAS Evidence

Dataset: indexed GWAS records.

Settings

SNP counts, plot highlights, gene associations and downloads use P < 10⁻¹⁰. Changing the threshold updates this page together.

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Associated genes

51 genes linked to SNP records with P < 10⁻¹⁰ in the selected scope. Supporting SNP records are counted per feature–gene pair.

Gene ID Alias Description Arabidopsis ortholog Supporting SNP recordsGene interval (1-based)Minimum P
Glyma.09G018700 hypothetical protein NA 2Chr09:1470411–1472672 (-)7.156e-12
Glyma.09G231100 hypothetical protein AT5G42970:COP8:Proteasome component (PCI) domain protein 2Chr09:45450922–45457330 (-)8.84e-11
Glyma.14G067800 hypothetical protein AT3G12380:ARP5:actin-related protein 5 2Chr14:5675792–5680343 (+)6.465e-13
Glyma.18G196200 hypothetical protein AT3G09100:AT3G09100:mRNA capping enzyme family protein 2Chr18:47102746–47129707 (+)4.668e-11
Glyma.18G231300 hypothetical protein AT3G61310:AT3G61310:AT hook motif DNA-binding family protein 2Chr18:51979095–51987062 (-)1.182e-11
Glyma.01G022300 hypothetical protein NA 1Chr01:2215383–2217438 (+)2.999e-12
Glyma.03G019600 hypothetical protein AT2G45640:SAP18:SIN3 associated polypeptide P18 1Chr03:2007617–2009871 (+)4.652e-11
Glyma.03G021700 hypothetical protein AT2G45490:AUR3:ataurora3 1Chr03:2248429–2251737 (+)7.25e-11
Glyma.03G022100 hypothetical protein AT4G32430:AT4G32430:Pentatricopeptide repeat (PPR) superfamily protein 1Chr03:2301675–2307263 (+)9.208e-12
Glyma.03G022500 hypothetical protein NA 1Chr03:2339702–2345448 (+)8.368e-11
Glyma.03G209700 hypothetical protein NA 1Chr03:41646792–41648527 (+)3.903e-11
Glyma.03G242800 hypothetical protein AT4G08630:AT4G08630:fas-binding factor-like protein 1Chr03:44064511–44073939 (+)5.51e-12
Glyma.04G063900 hypothetical protein NA 1Chr04:5310107–5313853 (+)2.97e-11
Glyma.06G078400 hypothetical protein AT4G31290:AT4G31290:ChaC-like family protein 1Chr06:6068728–6071360 (+)4.567e-12
Glyma.06G079400 hypothetical protein NA 1Chr06:6105463–6107101 (+)4.47e-13
Glyma.06G112300 hypothetical protein AT1G44780:AT1G44780:translation initiation factor__AT4G08310:AT4G08310:DNA ligase 1Chr06:9113982–9118848 (-)1.93e-11
Glyma.06G112600 hypothetical protein AT1G77620:AT1G77620:P-loop containing nucleoside triphosphate hydrolases superfamily protein 1Chr06:9134358–9144986 (+)1.93e-11
Glyma.06G112700 hypothetical protein AT1G44760:AT1G44760:Adenine nucleotide alpha hydrolases-like superfamily protein 1Chr06:9156973–9158659 (+)1.93e-11
Glyma.06G126500 hypothetical protein AT5G04070:AT5G04070:NAD(P)-binding Rossmann-fold superfamily protein 1Chr06:10367536–10373426 (-)3.083e-13
Glyma.06G126900 hypothetical protein AT5G04520:AT5G04520:3-oxoacyl-acyl-carrier synthase-like protein (Protein of unknown function DUF455) 1Chr06:10403126–10408307 (-)4.944e-11
Glyma.06G313500 hypothetical protein NA 1Chr06:50191600–50203098 (-)5.935e-11
Glyma.07G071800 hypothetical protein AT4G20960:PyrD:Cytidine/deoxycytidylate deaminase family protein 1Chr07:6523253–6526707 (+)2.553e-11
Glyma.07G091400 COL21 CONSTANS-like zinc finger protein AT1G25440:BBX15:B-box type zinc finger protein with CCT domain-containing protein 1Chr07:8539101–8547001 (+)4.397e-11
Glyma.08G104600 hypothetical protein AT1G27930:AT1G27930:glucuronoxylan 4-O-methyltransferase-like protein (DUF579) 1Chr08:8045602–8047222 (-)7.29e-11
Glyma.08G107800 AK-HSDH aspartokinase-homoserine dehydrogenase AT4G19710:AK-HSDH II:aspartate kinase-homoserine dehydrogenase ii 1Chr08:8296196–8307328 (-)1.19e-11
Glyma.08G108400 hypothetical protein NA 1Chr08:8326311–8330206 (+)1.19e-11
Glyma.08G109000 SUB1 NA 1Chr08:8364770–8373803 (-)3.308e-11
Glyma.08G110000 hypothetical protein AT3G23840:AT3G23840:HXXXD-type acyl-transferase family protein 1Chr08:8438346–8442806 (-)3.308e-11
Glyma.08G110200 hypothetical protein NA 1Chr08:8471393–8473156 (+)9.114e-11
Glyma.08G114700 hypothetical protein AT3G13600:AT3G13600:calmodulin-binding family protein 1Chr08:8768854–8772973 (-)3.216e-11
Glyma.09G082000 hypothetical protein NA 1Chr09:9638564–9650178 (+)5.398e-11
Glyma.11G024800 hypothetical protein NA 1Chr11:1754343–1759398 (+)2.099e-12
Glyma.14G066800 hypothetical protein NA 1Chr14:5511222–5513114 (+)6.846e-13
Glyma.14G068100 hypothetical protein AT3G12550:FDM3:XH/XS domain-containing protein 1Chr14:5701618–5711043 (-)1.4e-12
Glyma.14G068500 hypothetical protein NA 1Chr14:5741909–5745574 (-)3.804e-14
Glyma.14G069500 hypothetical protein AT5G37810:NIP4;1:NOD26-like intrinsic protein 4;1 1Chr14:5822246–5825628 (-)6.023e-13
Glyma.14G075900 hypothetical protein NA 1Chr14:6362111–6364010 (-)2.654e-13
Glyma.14G077100 hypothetical protein AT5G42610:AT5G42610:calcium uniporter (DUF607) 1Chr14:6486139–6488935 (+)3.162e-11
Glyma.14G077200 hypothetical protein AT5G42620:AT5G42620:metalloendopeptidase / zinc ion binding protein 1Chr14:6498564–6506068 (+)3.162e-11
Glyma.14G077300 hypothetical protein AT1G75040:PR5:pathosis-related protein 5 1Chr14:6508609–6520744 (-)3.162e-11
Glyma.14G213400 hypothetical protein NA 1Chr14:47844823–47847028 (+)9.889e-12
Glyma.15G121100 hypothetical protein NA 1Chr15:9567797–9570248 (+)1.343e-13
Glyma.15G121300 hypothetical protein AT5G47760:PGLP2:2-phosphoglycolate phosphatase 2 1Chr15:9584685–9590201 (-)3.069e-13
Glyma.15G121500 hypothetical protein AT1G03370:AT1G03370:C2 calcium/lipid-binding and GRAM domain containing protein 1Chr15:9602794–9615281 (+)1.343e-13
Glyma.15G121800 hypothetical protein NA 1Chr15:9643746–9648073 (+)1.343e-13
Glyma.16G145100 hypothetical protein NA 1Chr16:30578388–30581421 (-)2.252e-11
Glyma.16G145600 hypothetical protein AT1G11310:MLO2:Seven transmembrane MLO family protein__AT2G39200:MLO12:Seven transmembrane MLO family protein__AT1G6156… 1Chr16:30652378–30659548 (+)2.252e-11
Glyma.18G201700 hypothetical protein NA 1Chr18:48175554–48180264 (+)1.123e-11
Glyma.18G230600 hypothetical protein AT3G61250:MYB17:myb domain protein 17 1Chr18:51934101–51937216 (-)1.037e-11
Glyma.18G230700 hypothetical protein AT3G61290:AT3G61290:O-glucosyltransferase rumi-like protein (DUF821) 1Chr18:51943730–51947645 (+)3.069e-15
Glyma.18G231500 hypothetical protein NA 1Chr18:52019138–52019828 (-)4.729e-13