Soybean mGWAS DBExplore The Genetic Basis Of Soybean Metabolism Glycine max
Overview Annotation GWAS Evidence Associated genes

P51708

Metabolite ID
P51708
Deionized mass
218.1648 Da
Average m/z
279.2297
Average RT
28.0316
Adduct
[M+IsoProp+H]+, [M-H2O+H]+
Association scope
Overlapping genes only
Associated genes
109
GWAS result file
Available
Open in Soybean Metabolome Repository

Candidate annotations

Search compound candidates by deionized mass and tolerance. Follow compound IDs for database records, or use name searches to explore chemistry and soybean literature. About candidate annotations

GWAS Evidence

Dataset: indexed GWAS records.

Settings

SNP counts, plot highlights, gene associations and downloads use P < 10⁻¹⁰. Changing the threshold updates this page together.

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Associated genes

109 genes linked to SNP records with P < 10⁻¹⁰ in the selected scope. Supporting SNP records are counted per feature–gene pair.

Gene ID Alias Description Arabidopsis ortholog Supporting SNP recordsGene interval (1-based)Minimum P
Glyma.20G168100 hypothetical protein NA 8Chr20:40589632–40607456 (+)7.892e-12
Glyma.04G247600 hypothetical protein AT1G44350:ILL6:IAA-amino acid hydrolase ILR1-like 6 6Chr04:51480159–51488320 (+)4.149e-11
Glyma.03G205200 hypothetical protein AT5G06550:AT5G06550:transferring glycosyl group transferase 3Chr03:41322468–41326800 (-)1.096e-12
Glyma.04G251500 hypothetical protein AT1G44835:AT1G44835:YbaK/aminoacyl-tRNA synthetase-associated domain-containing protein 3Chr04:51829894–51834052 (+)4.149e-11
Glyma.17G247000 hypothetical protein NA 3Chr17:40264036–40270261 (-)1.848e-13
Glyma.02G271300 hypothetical protein AT4G15430:AT4G15430:ERD (early-responsive to dehydration stress) family protein 2Chr02:45512377–45519675 (+)4.149e-11
Glyma.03G032900 hypothetical protein AT4G00060:MEE44:Nucleotidyltransferase family protein 2Chr03:3811206–3826408 (+)1.508e-19
Glyma.03G033100 hypothetical protein NA 2Chr03:3833718–3843653 (-)1.508e-19
Glyma.03G204200 hypothetical protein NA 2Chr03:41243005–41247666 (+)1.096e-12
Glyma.03G204800 hypothetical protein AT5G06530:ABCG22:ABC-2 type transporter family protein 2Chr03:41281503–41290883 (-)1.096e-12
Glyma.03G205000 hypothetical protein AT3G54750:AT3G54750:downstream neighbor of Son 2Chr03:41311451–41318534 (+)1.096e-12
Glyma.03G205400 hypothetical protein AT5G06570:AT5G06570:alpha/beta-Hydrolases superfamily protein 2Chr03:41340149–41343255 (-)1.096e-12
Glyma.03G205500 hypothetical protein AT5G06580:AT5G06580:FAD-linked oxidases family protein 2Chr03:41348932–41359873 (-)1.096e-12
Glyma.04G251400 hypothetical protein AT1G44830:AT1G44830:Integrase-type DNA-binding superfamily protein 2Chr04:51825158–51826943 (+)4.149e-11
Glyma.04G251900 hypothetical protein AT4G08250:AT4G08250:GRAS family transcription factor 2Chr04:51872753–51874821 (+)4.149e-11
Glyma.04G252000 hypothetical protein AT2G41705:AT2G41705:camphor resistance CrcB family protein 2Chr04:51882953–51887424 (-)4.149e-11
Glyma.04G252700 hypothetical protein AT1G77720:PPK1:putative protein kinase 1 2Chr04:51934937–51939413 (+)4.149e-11
Glyma.04G253300 hypothetical protein NA 2Chr04:52004876–52006986 (-)4.149e-11
Glyma.04G253400 hypothetical protein NA 2Chr04:52009156–52016433 (-)4.149e-11
Glyma.10G217200 hypothetical protein AT1G21170:SEC5B:Exocyst complex component SEC5__AT1G76850:SEC5A:exocyst complex component sec5 2Chr10:44867121–44880722 (+)5.41e-11
Glyma.13G046600 hypothetical protein NA 2Chr13:14105161–14115147 (-)4.149e-11
Glyma.16G023100 Pyridoxine/pyridoxamine 5'-phosphate oxidase 2 AT2G46580:AT2G46580:Pyridoxamine 5'-phosphate oxidase family protein 2Chr16:2200379–2203038 (+)3.459e-14
Glyma.18G200300 hypothetical protein AT1G32780:AT1G32780:GroES-like zinc-binding dehydrogenase family protein 2Chr18:47969051–47975187 (+)6.268e-11
Glyma.18G289800 hypothetical protein NA 2Chr18:56923015–56925661 (+)1.831e-12
Glyma.20G170300 hypothetical protein AT1G71697:CK1:choline kinase 1 2Chr20:40814177–40818849 (+)9.346e-16
Glyma.20G172200 hypothetical protein NA 2Chr20:40991514–40998998 (+)9.346e-16
Glyma.01G182300 hypothetical protein AT4G37090:AT4G37090:UDP-N-acetylmuramoyl-L-alanyl-D-glutamate-2, 6-diaminopimelate ligase 1Chr01:51790685–51792859 (-)4.149e-11
Glyma.01G200900 hypothetical protein AT5G46560:AT5G46560:Man1-Src1p-carboxy-terminal domain protein 1Chr01:53456587–53460978 (-)1.691e-11
Glyma.01G207500 hypothetical protein AT4G16760:ACX1:acyl-CoA oxidase 1 1Chr01:53941788–53948759 (+)1.625e-12
Glyma.02G271100 WBb98N11.19 AT4G15420:AT4G15420:Ubiquitin fusion degradation UFD1 family protein 1Chr02:45498918–45502715 (+)4.149e-11
Glyma.03G032700 hypothetical protein NA 1Chr03:3740621–3743020 (-)1.507e-19
Glyma.03G033500 hypothetical protein NA 1Chr03:3865948–3867026 (+)1.508e-19
Glyma.03G204300 hypothetical protein AT3G52370:FLA15:FASCICLIN-like arabinogalactan protein 15__AT2G35860:FLA16:FASCICLIN-like arabinogalactan protein 16 1Chr03:41250882–41253833 (-)1.096e-12
Glyma.03G205100 hypothetical protein AT5G06540:AT5G06540:Pentatricopeptide repeat (PPR) superfamily protein 1Chr03:41319644–41321764 (-)1.096e-12
Glyma.03G205300 hypothetical protein NA 1Chr03:41328547–41332493 (-)1.096e-12
Glyma.03G205600 hypothetical protein NA 1Chr03:41363618–41365880 (+)1.096e-12
Glyma.04G220400 hypothetical protein AT5G10020:AT5G10020:Leucine-rich receptor-like protein kinase family protein 1Chr04:49102263–49108229 (+)4.758e-12
Glyma.04G220500 hypothetical protein AT2G40470:LBD15:LOB domain-containing protein 15 1Chr04:49114993–49119034 (+)4.758e-12
Glyma.04G220600 hypothetical protein AT5G05340:PRX52:Peroxidase superfamily protein 1Chr04:49133080–49135000 (-)4.758e-12
Glyma.04G220700 hypothetical protein AT2G40460:AT2G40460:Major facilitator superfamily protein 1Chr04:49148342–49152686 (-)4.758e-12
Glyma.04G222900 hypothetical protein AT2G40660:AT2G40660:Nucleic acid-binding, OB-fold-like protein 1Chr04:49346340–49355316 (+)1.588e-11
Glyma.04G251000 hypothetical protein AT4G08290:UMAMIT20:nodulin MtN21 /EamA-like transporter family protein 1Chr04:51760822–51766080 (-)4.149e-11
Glyma.04G251300 hypothetical protein NA 1Chr04:51808728–51810705 (-)4.149e-11
Glyma.04G252100 hypothetical protein NA 1Chr04:51892841–51893763 (+)4.149e-11
Glyma.04G252500 hypothetical protein NA 1Chr04:51920445–51924637 (+)4.149e-11
Glyma.04G252600 hypothetical protein NA 1Chr04:51926107–51928268 (-)4.149e-11
Glyma.04G252800 hypothetical protein AT2G17900:SDG37:SET domain group 37 1Chr04:51939778–51946490 (-)4.149e-11
Glyma.04G252900 hypothetical protein AT1G37150:HCS2:holocarboxylase synthetase 2__AT2G25710:HCS1:holocarboxylase synthase 1 1Chr04:51946270–51951849 (+)4.149e-11
Glyma.04G253100 hypothetical protein NA 1Chr04:51988819–51993371 (+)4.149e-11
Glyma.04G253200 hypothetical protein NA 1Chr04:51992841–51993199 (-)4.149e-11
Glyma.04G253500 hypothetical protein NA 1Chr04:52018537–52026002 (-)4.149e-11
Glyma.05G171400 hypothetical protein AT4G05420:DDB1A:damaged DNA binding protein 1A__AT4G21100:DDB1B:damaged DNA binding protein 1B 1Chr05:36157731–36169032 (-)1.532e-19
Glyma.07G054200 hypothetical protein AT2G46570:LAC6:laccase 6 1Chr07:4742597–4747000 (-)4.884e-11
Glyma.08G129700 hypothetical protein AT4G21120:AAT1:amino acid transporter 1 1Chr08:9986491–9988640 (+)1.532e-19
Glyma.08G130300 hypothetical protein AT1G24530:: 1Chr08:10010969–10013085 (+)1.532e-19
Glyma.08G132800 HDL56 homeodomain-leucine zipper protein 56 AT4G40060:HB16:homeobox protein 16__AT2G22430:HB6:homeobox protein 6 1Chr08:10180949–10183209 (+)1.32e-12
Glyma.08G359300 hypothetical protein AT5G60020:LAC17:laccase 17 1Chr08:47117261–47120794 (-)9.129e-12
Glyma.08G359500 hypothetical protein AT1G71110:AT1G71110:uncharacterized protein 1Chr08:47130702–47135597 (+)9.13e-12
Glyma.08G360600 hypothetical protein AT5G13160:PBS1:Protein kinase superfamily protein 1Chr08:47242557–47246913 (-)4.252e-16
Glyma.09G052700 hypothetical protein AT1G31120:KUP10:K+ uptake permease 10 1Chr09:4617652–4626364 (+)5.645e-20
Glyma.09G052900 hypothetical protein NA 1Chr09:4652312–4653046 (+)5.645e-20
Glyma.09G195400 hypothetical protein AT3G51520:DGAT2:diacylglycerol acyltransferase family 1Chr09:41998907–42006064 (+)1.76e-12
Glyma.09G238400 hypothetical protein NA 1Chr09:46080579–46082039 (+)2.45e-14
Glyma.09G278500 hypothetical protein NA 1Chr09:49384135–49397229 (+)4.149e-11
Glyma.10G007700 hypothetical protein NA 1Chr10:742509–745328 (-)8.399e-11
Glyma.10G008000 hypothetical protein NA 1Chr10:755392–762613 (+)8.399e-11
Glyma.10G216700 hypothetical protein AT1G35680:RPL21C:Ribosomal protein L21 1Chr10:44835816–44838960 (-)5.41e-11
Glyma.10G216900 hypothetical protein AT4G09570:CPK4:calcium-dependent protein kinase 4 1Chr10:44845011–44849336 (-)5.41e-11
Glyma.10G217000 hypothetical protein AT1G35670:CDPK2:calcium-dependent protein kinase 2 1Chr10:44851172–44856590 (-)5.41e-11
Glyma.10G217300 hypothetical protein AT1G71960:ABCG25:ATP-binding cassette family G25 1Chr10:44899066–44906371 (+)5.41e-11
Glyma.10G217900 SUT1 sucrose transporter AT1G22710:SUC2:sucrose-proton symporter 2__AT1G66570:SUC7:sucrose-proton symporter 7__AT2G14670:SUC8:sucrose-proton sym… 1Chr10:44953802–44957372 (-)5.41e-11
Glyma.11G108300 hypothetical protein NA 1Chr11:8261601–8264930 (-)6.932e-12
Glyma.13G176600 hypothetical protein AT1G28380:NSL1:MAC/Perforin domain-containing protein 1Chr13:29066855–29072319 (-)4.149e-11
Glyma.13G177900 hypothetical protein AT2G33800:EMB3113:Ribosomal protein S5 family protein 1Chr13:29182486–29185046 (+)4.149e-11
Glyma.13G200400 hypothetical protein NA 1Chr13:31403066–31411738 (+)4.149e-11
Glyma.13G310600 hypothetical protein NA 1Chr13:40603354–40608218 (-)8.258e-12
Glyma.16G022500 hypothetical protein NA 1Chr16:2116004–2119420 (-)3.459e-14
Glyma.16G023800 hypothetical protein NA 1Chr16:2300457–2301758 (-)8.175e-11
Glyma.16G031200 hypothetical protein NA 1Chr16:2942564–2944901 (-)6.975e-11
Glyma.17G051400 hypothetical protein NA 1Chr17:3904305–3909472 (+)4.322e-11
Glyma.17G054900 hypothetical protein AT4G29735:AT4G29735:uncharacterized protein 1Chr17:4172248–4174608 (+)2.45e-14
Glyma.17G058200 hypothetical protein NA 1Chr17:4418643–4419101 (-)4.144e-11
Glyma.17G246600 hypothetical protein NA 1Chr17:40245376–40260235 (-)1.848e-13
Glyma.17G246900 hypothetical protein NA 1Chr17:40263333–40263858 (-)1.848e-13
Glyma.17G247100 hypothetical protein NA 1Chr17:40266997–40267845 (+)1.848e-13
Glyma.17G247300 hypothetical protein AT1G74970:RPS9:ribosomal protein S9 1Chr17:40277340–40280463 (-)1.848e-13
Glyma.17G247400 hypothetical protein AT1G47530:AT1G47530:MATE efflux family protein 1Chr17:40283791–40290776 (-)1.848e-13
Glyma.18G198100 hypothetical protein NA 1Chr18:47592690–47593950 (-)1.4e-11
Glyma.18G198200 hypothetical protein NA 1Chr18:47594340–47597395 (+)1.4e-11
Glyma.18G198300 hypothetical protein NA 1Chr18:47598384–47601202 (-)1.4e-11
Glyma.18G239200 hypothetical protein AT2G46180:GC4:golgin Putative 4 1Chr18:52799308–52808909 (+)7.748e-21
Glyma.18G287400 hypothetical protein AT3G55410:AT3G55410:2-oxoglutarate dehydrogenase, E1 component 1Chr18:56740754–56748259 (-)1.055e-17
Glyma.18G291000 hypothetical protein NA 1Chr18:56983468–56985386 (-)6.566e-15
Glyma.18G294800 hypothetical protein NA 1Chr18:57227327–57231469 (+)1.927e-13
Glyma.18G294900 hypothetical protein NA 1Chr18:57235496–57236456 (+)2.863e-15
Glyma.20G166900 hypothetical protein AT1G43640:TLP5:tubby like protein 5 1Chr20:40499805–40503848 (+)7.892e-12
Glyma.20G167900 hypothetical protein AT1G43620:UGT80B1:UDP-Glycosyltransferase superfamily protein 1Chr20:40568843–40578286 (-)7.892e-12
Glyma.20G168800 hypothetical protein AT5G50020:AT5G50020:DHHC-type zinc finger family protein 1Chr20:40652204–40657572 (-)7.892e-12
Glyma.20G169200 hypothetical protein NA 1Chr20:40696468–40698879 (+)7.892e-12
Glyma.20G169600 hypothetical protein NA 1Chr20:40727402–40732908 (-)7.892e-12
Glyma.20G169700 hypothetical protein NA 1Chr20:40728399–40730571 (+)7.892e-12
Glyma.20G169900 hypothetical protein AT1G22780:PFL:Ribosomal protein S13/S18 family 1Chr20:40748299–40750294 (-)7.892e-12
Glyma.20G170400 hypothetical protein AT4G10380:NIP5;1:NOD26-like intrinsic protein 5;1 1Chr20:40820810–40828521 (-)9.346e-16
Glyma.20G170500 hypothetical protein AT1G34120:IP5PI:inositol polyphosphate 5-phosphatase I 1Chr20:40836563–40848616 (-)9.346e-16
Glyma.20G171400 hypothetical protein AT1G22750:AT1G22750:uncharacterized protein 1Chr20:40914523–40927292 (-)9.346e-16
Glyma.20G171700 hypothetical protein AT1G34150:AT1G34150:Pseudouridine synthase family protein 1Chr20:40941339–40957772 (+)9.346e-16
Glyma.20G171800 hypothetical protein AT1G71790:CPB:Subunits of heterodimeric actin filament capping protein Capz superfamily 1Chr20:40959554–40962492 (+)9.346e-16
Glyma.20G172700 hypothetical protein AT5G48100:TT10:Laccase/Diphenol oxidase family protein 1Chr20:41025526–41028921 (-)9.346e-16
Glyma.20G172900 hypothetical protein NA 1Chr20:41036958–41039129 (-)9.346e-16