Soybean mGWAS DBExplore The Genetic Basis Of Soybean Metabolism Glycine max
Overview Annotation GWAS Evidence Associated genes

P51609

Metabolite ID
P51609
Deionized mass
576.2553 Da
Average m/z
577.2647
Average RT
27.9809
Adduct
[M+H]+
Association scope
Overlapping genes only
Associated genes
44
GWAS result file
Available
Open in Soybean Metabolome Repository

Candidate annotations

Search compound candidates by deionized mass and tolerance. Follow compound IDs for database records, or use name searches to explore chemistry and soybean literature. About candidate annotations

GWAS Evidence

Dataset: indexed GWAS records.

Settings

SNP counts, plot highlights, gene associations and downloads use P < 10⁻¹⁰. Changing the threshold updates this page together.

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Associated genes

44 genes linked to SNP records with P < 10⁻¹⁰ in the selected scope. Supporting SNP records are counted per feature–gene pair.

Gene ID Alias Description Arabidopsis ortholog Supporting SNP recordsGene interval (1-based)Minimum P
Glyma.01G172900 hypothetical protein NA 3Chr01:51020276–51025649 (-)4.904e-12
Glyma.20G107200 hypothetical protein AT4G38540:AT4G38540:FAD/NAD(P)-binding oxidoreductase family protein 3Chr20:34984922–34988496 (+)6.005e-15
Glyma.01G171900 hypothetical protein AT5G66460:MAN7:Glycosyl hydrolase superfamily protein 2Chr01:50912520–50915454 (-)1.124e-11
Glyma.07G021800 hypothetical protein AT1G80920:J8:Chaperone DnaJ-domain superfamily protein 2Chr07:1697119–1698666 (+)7.771e-12
Glyma.20G106900 hypothetical protein NA 2Chr20:34962043–34967985 (+)4.783e-16
Glyma.01G172500 hypothetical protein NA 1Chr01:50960881–50965173 (-)4.313e-11
Glyma.01G172600 IFR1 NA 1Chr01:50980302–50982573 (-)1.38e-11
Glyma.01G173000 hypothetical protein NA 1Chr01:51026937–51035200 (+)1.38e-11
Glyma.01G173900 hypothetical protein NA 1Chr01:51092004–51094319 (+)2.529e-11
Glyma.01G211800 hypothetical protein NA 1Chr01:54334961–54337099 (-)4.313e-11
Glyma.03G023000 hypothetical protein AT4G00220:JLO:Lateral organ boundaries (LOB) domain family protein 1Chr03:2423540–2428634 (-)1.406e-16
Glyma.04G086600 hypothetical protein NA 1Chr04:7374806–7380808 (+)1.333e-11
Glyma.05G127500 hypothetical protein NA 1Chr05:32041345–32049554 (+)9.872e-11
Glyma.05G220900 hypothetical protein NA 1Chr05:40040654–40043504 (+)1.179e-12
Glyma.05G224700 hypothetical protein NA 1Chr05:40351005–40361888 (+)8.148e-11
Glyma.05G236700 hypothetical protein AT4G33760:AT4G33760:tRNA synthetase class II (D, K and N) family protein 1Chr05:41301540–41310727 (+)2.073e-11
Glyma.07G021700 hypothetical protein NA 1Chr07:1684537–1692320 (+)2.325e-11
Glyma.07G035100 hypothetical protein NA 1Chr07:2810396–2815857 (+)8.047e-11
Glyma.07G035600 hypothetical protein AT1G67120:AT1G67120:midasin-like protein 1Chr07:2836189–2887535 (+)8.047e-11
Glyma.08G114800 hypothetical protein AT5G19830:AT5G19830:Peptidyl-tRNA hydrolase family protein 1Chr08:8792663–8798214 (-)1.526e-11
Glyma.08G115400 hypothetical protein NA 1Chr08:8848959–8851344 (+)1.138e-11
Glyma.08G115700 hypothetical protein AT1G29120:AT1G29120:Hydrolase-like protein family 1Chr08:8868075–8876513 (+)4.089e-12
Glyma.08G116300 P34 NA 1Chr08:8935918–8938248 (-)9.477e-11
Glyma.08G116400 hypothetical protein NA 1Chr08:8947598–8949573 (-)1.009e-13
Glyma.08G116700 hypothetical protein NA 1Chr08:8997512–9003565 (+)1.02e-12
Glyma.08G116800 hypothetical protein AT1G29240:AT1G29240:transcription initiation factor TFIID subunit, putative (DUF688) 1Chr08:9006479–9010442 (-)1.895e-12
Glyma.08G123500 hypothetical protein NA 1Chr08:9494946–9505931 (-)2.446e-11
Glyma.08G140900 hypothetical protein AT5G64940:ATH13:ABC2 homolog 13 1Chr08:10760962–10769630 (-)2.274e-11
Glyma.08G204800 hypothetical protein AT3G16140:PSAH-1:photosystem I subunit H-1 1Chr08:16601039–16602646 (+)1.099e-11
Glyma.09G016500 hypothetical protein NA 1Chr09:1274652–1276853 (-)2.399e-16
Glyma.09G016800 hypothetical protein NA 1Chr09:1300913–1311894 (+)4.533e-15
Glyma.09G268900 hypothetical protein NA 1Chr09:48638803–48644136 (+)8.098e-11
Glyma.09G270400 hypothetical protein NA 1Chr09:48735991–48740879 (+)9.206e-11
Glyma.13G049100 hypothetical protein NA 1Chr13:14498952–14506408 (-)7.128e-12
Glyma.15G070100 hypothetical protein AT1G61140:EDA16:SNF2 domain-containing protein / helicase domain-containing protein / zinc finger protein-like protein 1Chr15:5355553–5364428 (+)1.096e-11
Glyma.15G071600 hypothetical protein AT4G21660:AT4G21660:proline-rich spliceosome-associated (PSP) family protein 1Chr15:5481672–5488866 (-)1.096e-11
Glyma.16G139000 hypothetical protein NA 1Chr16:29623540–29631451 (+)1.053e-11
Glyma.16G189100 hypothetical protein AT1G05190:emb2394:Ribosomal protein L6 family 1Chr16:35170253–35173950 (-)4.437e-13
Glyma.16G209300 hypothetical protein NA 1Chr16:36856833–36863994 (-)9.01e-11
Glyma.20G013100 hypothetical protein NA 1Chr20:1134080–1135710 (-)2.487e-13
Glyma.20G018000 hypothetical protein AT1G70820:AT1G70820:phosphoglucomutase, putative / glucose phosphomutase 1Chr20:1840259–1844405 (-)4.821e-11
Glyma.20G106400 hypothetical protein AT5G23590:AT5G23590:DNAJ heat shock N-terminal domain-containing protein 1Chr20:34888699–34893605 (-)8.047e-11
Glyma.20G107300 hypothetical protein AT2G16920:UBC23:ubiquitin-conjugating enzyme 23 1Chr20:34991156–34999277 (+)2.634e-11
Glyma.20G107500 hypothetical protein AT2G16910:AMS:basic helix-loop-helix (bHLH) DNA-binding superfamily protein 1Chr20:35011922–35015196 (-)6.579e-11