Soybean mGWAS DBExplore The Genetic Basis Of Soybean Metabolism Glycine max
Overview Annotation GWAS Evidence Associated genes

P51514

Metabolite ID
P51514
Deionized mass
549.3464 Da
Average m/z
550.3560
Average RT
27.8603
Adduct
[M+H]+
Association scope
Overlapping genes only
Associated genes
57
GWAS result file
Available
Open in Soybean Metabolome Repository

Candidate annotations

Search compound candidates by deionized mass and tolerance. Follow compound IDs for database records, or use name searches to explore chemistry and soybean literature. About candidate annotations

GWAS Evidence

Dataset: indexed GWAS records.

Settings

SNP counts, plot highlights, gene associations and downloads use P < 10⁻¹⁰. Changing the threshold updates this page together.

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Associated genes

57 genes linked to SNP records with P < 10⁻¹⁰ in the selected scope. Supporting SNP records are counted per feature–gene pair.

Gene ID Alias Description Arabidopsis ortholog Supporting SNP recordsGene interval (1-based)Minimum P
Glyma.13G134400 hypothetical protein AT2G37370:AT2G37370:centrosomal protein of 135 kDa-like protein 3Chr13:24677399–24693129 (-)2.881e-11
Glyma.06G315100 hypothetical protein AT5G04930:ALA1:aminophospholipid ATPase 1 2Chr06:50401945–50408153 (+)3.308e-13
Glyma.14G093100 hypothetical protein NA 2Chr14:8654730–8655892 (-)4.005e-12
Glyma.14G201600 hypothetical protein NA 2Chr14:46703283–46706500 (+)9.228e-12
Glyma.19G223000 hypothetical protein AT1G02310:MAN1:Glycosyl hydrolase superfamily protein 2Chr19:47525151–47530202 (+)1.896e-12
Glyma.19G223300 hypothetical protein AT4G01610:AT4G01610:Cysteine proteinases superfamily protein__AT1G02305:AT1G02305:Cysteine proteinases superfamily prot… 2Chr19:47559538–47565331 (-)1.263e-14
Glyma.19G224000 hypothetical protein AT4G11160:AT4G11160:Translation initiation factor 2, small GTP-binding protein 2Chr19:47620374–47625859 (+)1.263e-14
Glyma.01G117000 hypothetical protein NA 1Chr01:40366281–40370122 (+)8.382e-11
Glyma.01G117200 hypothetical protein NA 1Chr01:40497525–40501709 (-)8.382e-11
Glyma.01G119600 SLE3 AT2G40170:GEA6:Stress induced protein 1Chr01:41172520–41174209 (-)7.825e-13
Glyma.01G120000 hypothetical protein NA 1Chr01:41270985–41274854 (+)7.942e-12
Glyma.01G121400 hypothetical protein AT5G01400:ESP4:HEAT repeat-containing protein 1Chr01:41808055–41828625 (-)1.259e-13
Glyma.01G123900 hypothetical protein AT3G51770:ETO1:tetratricopeptide repeat (TPR)-containing protein 1Chr01:42831758–42837350 (+)3.058e-11
Glyma.01G124100 hypothetical protein NA 1Chr01:42886229–42892204 (-)6.352e-14
Glyma.03G023000 hypothetical protein AT4G00220:JLO:Lateral organ boundaries (LOB) domain family protein 1Chr03:2423540–2428634 (-)1.893e-12
Glyma.05G224500 hypothetical protein NA 1Chr05:40342583–40345336 (+)8.845e-11
Glyma.05G224700 hypothetical protein NA 1Chr05:40351005–40361888 (+)3.106e-12
Glyma.05G226000 hypothetical protein AT5G19730:AT5G19730:Pectin lyase-like superfamily protein 1Chr05:40458098–40461736 (+)6.93e-12
Glyma.05G236700 hypothetical protein AT4G33760:AT4G33760:tRNA synthetase class II (D, K and N) family protein 1Chr05:41301540–41310727 (+)5.61e-12
Glyma.05G237800 hypothetical protein AT1G48790:AMSH1:associated molecule with the SH3 domain of STAM 1 1Chr05:41406807–41413022 (-)4.4e-13
Glyma.06G316500 hypothetical protein AT2G47420:DIM1A:Ribosomal RNA adenine dimethylase family protein 1Chr06:50531222–50538652 (-)8.539e-12
Glyma.09G058900 hypothetical protein NA 1Chr09:5397968–5404650 (-)3.735e-11
Glyma.09G082000 hypothetical protein NA 1Chr09:9638564–9650178 (+)1.397e-11
Glyma.09G084300 hypothetical protein AT2G34680:AIR9:Outer arm dynein light chain 1 protein 1Chr09:10129602–10197250 (-)1.527e-14
Glyma.10G081700 hypothetical protein NA 1Chr10:9752508–9758422 (+)9.805e-11
Glyma.11G048300 hypothetical protein AT4G37640:ACA2:calcium ATPase 2 1Chr11:3601241–3607177 (+)1.721e-13
Glyma.11G049700 hypothetical protein NA 1Chr11:3731308–3734534 (+)2.854e-13
Glyma.11G050300 hypothetical protein AT2G23093:AT2G23093:Major facilitator superfamily protein 1Chr11:3765453–3771565 (+)1.62e-12
Glyma.11G050500 hypothetical protein AT5G67370:CGLD27:DUF1230 family protein (DUF1230) 1Chr11:3778152–3782174 (+)1.62e-12
Glyma.11G050600 hypothetical protein NA 1Chr11:3779988–3786583 (-)1.62e-12
Glyma.11G051600 hypothetical protein NA 1Chr11:3857225–3859564 (-)1.62e-12
Glyma.11G127100 hypothetical protein AT1G06040:STO:B-box zinc finger family protein 1Chr11:9656242–9659517 (+)8.647e-11
Glyma.11G127200 hypothetical protein AT3G59480:AT3G59480:pfkB-like carbohydrate kinase family protein 1Chr11:9660434–9665570 (-)8.647e-11
Glyma.11G127300 hypothetical protein AT2G28480:AT2G28480:RNA-binding CRS1 / YhbY (CRM) domain protein 1Chr11:9667918–9671917 (-)8.647e-11
Glyma.12G098200 hypothetical protein AT2G32480:ARASP:chloroplastic membrane metallo proteases__AT1G05140:AT1G05140:Peptidase M50 family protein 1Chr12:8452063–8456493 (+)3.072e-11
Glyma.12G108600 hypothetical protein NA 1Chr12:9994609–9997302 (-)2.99e-11
Glyma.12G109500 hypothetical protein AT4G03415:PP2C52:Protein phosphatase 2C family protein 1Chr12:10308026–10314332 (-)2.99e-11
Glyma.13G134300 hypothetical protein NA 1Chr13:24664171–24665742 (-)2.881e-11
Glyma.13G134500 hypothetical protein AT3G09560:PAH1:Lipin family protein 1Chr13:24696109–24705068 (-)7.268e-11
Glyma.14G201700 hypothetical protein NA 1Chr14:46711634–46715644 (-)9.228e-12
Glyma.15G035600 hypothetical protein AT3G46740:TOC75-III:translocon at the outer envelope membrane of chloroplasts 75-III 1Chr15:2830678–2835534 (+)4.073e-12
Glyma.15G037600 hypothetical protein AT2G29050:RBL1:RHOMBOID-like 1 1Chr15:2964304–2967785 (+)9.436e-11
Glyma.15G124000 hypothetical protein NA 1Chr15:9845097–9849312 (-)4.784e-12
Glyma.15G124500 MLO-like protein 13 AT4G24250:MLO13:Seven transmembrane MLO family protein 1Chr15:9888761–9894068 (-)1.171e-11
Glyma.16G027600 hypothetical protein AT1G30240:AT1G30240:proline-, glutamic acid/leucine-rich protein 1Chr16:2697412–2706628 (+)4.408e-11
Glyma.16G028100 hypothetical protein AT3G07570:AT3G07570:Cytochrome b561/ferric reductase transmembrane with DOMON related domain-containing protein 1Chr16:2725294–2733429 (-)5.413e-13
Glyma.17G064000 hypothetical protein AT2G18840:AT2G18840:Integral membrane Yip1 family protein__AT4G30260:AT4G30260:Integral membrane Yip1 family protein 1Chr17:4924830–4930155 (-)2.448e-11
Glyma.17G064200 hypothetical protein AT5G57500:AT5G57500:Galactosyltransferase family protein 1Chr17:4943412–4944357 (-)2.448e-11
Glyma.18G251900 hypothetical protein AT3G60320:AT3G60320:bZIP domain class transcription factor (DUF630 and DUF632)__AT1G02110:AT1G02110:bZIP domain class t… 1Chr18:53855786–53862322 (-)7.906e-12
Glyma.18G266100 hypothetical protein NA 1Chr18:55052591–55056489 (-)6.057e-12
Glyma.18G266500 hypothetical protein NA 1Chr18:55088284–55091427 (-)7.373e-13
Glyma.18G273000 hypothetical protein NA 1Chr18:55575628–55582063 (-)2.047e-11
Glyma.19G222200 hypothetical protein NA 1Chr19:47439424–47441508 (+)5.104e-11
Glyma.19G223100 hypothetical protein NA 1Chr19:47534912–47540592 (-)1.896e-12
Glyma.19G224100 hypothetical protein NA 1Chr19:47626692–47629861 (+)1.263e-14
Glyma.19G224200 GmPhyA3 AT1G09570:PHYA:phytochrome A 1Chr19:47633059–47641958 (+)1.896e-12
Glyma.19G224500 hypothetical protein AT3G05910:AT3G05910:Pectinacetylesterase family protein 1Chr19:47664635–47670007 (+)3.383e-13