Soybean mGWAS DBExplore The Genetic Basis Of Soybean Metabolism Glycine max
Overview Annotation GWAS Evidence Associated genes

P51460

Metabolite ID
P51460
Deionized mass
244.1327 Da
Average m/z
245.1399
Average RT
27.8305
Adduct
[M+H]+
Association scope
Overlapping genes only
Associated genes
114
GWAS result file
Available
Open in Soybean Metabolome Repository

Candidate annotations

Search compound candidates by deionized mass and tolerance. Follow compound IDs for database records, or use name searches to explore chemistry and soybean literature. About candidate annotations

GWAS Evidence

Dataset: indexed GWAS records.

Settings

SNP counts, plot highlights, gene associations and downloads use P < 10⁻¹⁰. Changing the threshold updates this page together.

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Associated genes

114 genes linked to SNP records with P < 10⁻¹⁰ in the selected scope. Supporting SNP records are counted per feature–gene pair.

Gene ID Alias Description Arabidopsis ortholog Supporting SNP recordsGene interval (1-based)Minimum P
Glyma.06G305700 hypothetical protein AT2G05710:ACO3:aconitase 3 3Chr06:49451501–49461369 (-)4.49e-14
Glyma.16G210200 hypothetical protein NA 3Chr16:36933402–36938940 (+)1.366e-11
Glyma.03G120100 hypothetical protein AT5G26120:ASD2:alpha-L-arabinofuranosidase 2 2Chr03:33174618–33180955 (+)1.236e-15
Glyma.05G149900 hypothetical protein NA 2Chr05:34389242–34393621 (-)8.276e-13
Glyma.08G122200 hypothetical protein NA 2Chr08:9416766–9429995 (-)6.405e-17
Glyma.08G122300 hypothetical protein AT1G29390:COR314-TM2:cold regulated 314 thylakoid membrane 2 2Chr08:9435391–9437279 (+)6.405e-17
Glyma.08G123500 hypothetical protein NA 2Chr08:9494946–9505931 (-)6.405e-17
Glyma.09G274700 hypothetical protein NA 2Chr09:49057465–49065986 (-)1.482e-13
Glyma.09G275800 hypothetical protein NA 2Chr09:49116424–49122191 (-)1.482e-13
Glyma.09G276100 hypothetical protein AT2G38510:AT2G38510:MATE efflux family protein 2Chr09:49139110–49143810 (-)1.482e-13
Glyma.09G277300 hypothetical protein NA 2Chr09:49271634–49276648 (-)8.499e-11
Glyma.16G208500 EIF6 AT3G55620:eIF6A:Translation initiation factor IF6 2Chr16:36806718–36809299 (+)2.452e-12
Glyma.16G209300 hypothetical protein NA 2Chr16:36856833–36863994 (-)6.205e-11
Glyma.01G168800 hypothetical protein AT1G24430:AT1G24430:HXXXD-type acyl-transferase family protein 1Chr01:50633986–50636589 (+)2.633e-12
Glyma.02G086900 hypothetical protein AT3G24130:AT3G24130:Pectin lyase-like superfamily protein 1Chr02:7553127–7557516 (-)4.964e-11
Glyma.02G091800 hypothetical protein NA 1Chr02:8129908–8133455 (+)3.636e-11
Glyma.02G287700 hypothetical protein AT3G58780:SHP1:K-box region and MADS-box transcription factor family protein__AT2G42830:SHP2:K-box region and MADS-box … 1Chr02:46797935–46805223 (-)3.435e-13
Glyma.03G001500 B15-3-5 AT2G38600:AT2G38600:HAD superfamily, subfamily IIIB acid phosphatase 1Chr03:169480–172727 (+)3.098e-11
Glyma.03G007800 hypothetical protein AT4G26010:AT4G26010:Peroxidase superfamily protein 1Chr03:758088–760465 (-)1.342e-11
Glyma.03G007900 hypothetical protein NA 1Chr03:764330–766878 (-)3.073e-11
Glyma.03G119400 hypothetical protein AT5G43280:DCI1:delta(3,5),delta(2,4)-dienoyl-CoA isomerase 1 1Chr03:33050663–33053094 (+)1.285e-13
Glyma.03G124500 hypothetical protein NA 1Chr03:33758928–33762195 (+)5.705e-12
Glyma.03G169700 hypothetical protein AT2G20240:TRM17:GPI-anchored adhesin-like protein, putative (DUF3741)__AT4G28760:TRM20:methyl-coenzyme M reductase II s… 1Chr03:38442950–38448706 (+)7.828e-11
Glyma.03G177700 hypothetical protein NA 1Chr03:39046772–39051158 (+)2.777e-11
Glyma.04G116900 hypothetical protein NA 1Chr04:13696275–13700803 (+)5.806e-11
Glyma.05G124700 hypothetical protein NA 1Chr05:31807311–31817648 (+)9.778e-11
Glyma.05G127300 hypothetical protein AT1G64520:RPN12a:regulatory particle non-ATPase 12A__AT5G42040:RPN12b:regulatory particle non-ATPase 12B 1Chr05:32021521–32025767 (-)1.636e-12
Glyma.05G127400 hypothetical protein AT1G29850:AT1G29850:double-stranded DNA-binding family protein 1Chr05:32030115–32033716 (+)1.636e-12
Glyma.05G127500 hypothetical protein NA 1Chr05:32041345–32049554 (+)7.883e-13
Glyma.05G127800 hypothetical protein AT4G18240:SS4:starch synthase 4 1Chr05:32125404–32138244 (+)2.488e-11
Glyma.05G127900 SAD1 AT5G48870:SAD1:Small nuclear ribonucleoprotein family protein 1Chr05:32139620–32141770 (-)2.488e-11
Glyma.05G128200 hypothetical protein AT5G46330:FLS2:Leucine-rich receptor-like protein kinase family protein 1Chr05:32158034–32162343 (-)2.488e-11
Glyma.05G130700 hypothetical protein AT2G34560:CCP1:P-loop containing nucleoside triphosphate hydrolases superfamily protein 1Chr05:32376592–32384905 (+)1.455e-12
Glyma.05G131200 hypothetical protein AT5G58230:MSI1:Transducin/WD40 repeat-like superfamily protein 1Chr05:32421116–32425198 (-)4.904e-11
Glyma.05G149300 hypothetical protein AT2G03870:EMB2816:Small nuclear ribonucleoprotein family protein 1Chr05:34357418–34361032 (-)2.88e-12
Glyma.05G224200 hypothetical protein NA 1Chr05:40307329–40312025 (+)6.178e-11
Glyma.05G236700 hypothetical protein AT4G33760:AT4G33760:tRNA synthetase class II (D, K and N) family protein 1Chr05:41301540–41310727 (+)1.034e-13
Glyma.06G019800 hypothetical protein NA 1Chr06:1494230–1501925 (+)3.552e-11
Glyma.06G125200 hypothetical protein AT4G27940:MTM1:manganese tracking factor for mitochondrial SOD2 1Chr06:10209787–10215982 (+)9.985e-13
Glyma.06G125300 hypothetical protein AT5G24105:AGP41:arabinogalactan protein 41 1Chr06:10216506–10218901 (-)9.985e-13
Glyma.06G168700 hypothetical protein AT5G63520:AT5G63520:F-box/LRR protein 1Chr06:14104416–14111842 (+)8.342e-11
Glyma.06G305300 hypothetical protein NA 1Chr06:49431590–49435985 (-)4.491e-14
Glyma.06G305600 hypothetical protein NA 1Chr06:49446542–49450635 (-)4.491e-14
Glyma.07G015700 hypothetical protein AT1G79750:NADP-ME4:NADP-malic enzyme 4 1Chr07:1244977–1251198 (-)3.737e-13
Glyma.08G016700 hypothetical protein AT1G63840:AT1G63840:RING/U-box superfamily protein 1Chr08:1330226–1331366 (-)1.187e-12
Glyma.08G117500 hypothetical protein AT4G18780:IRX1:cellulose synthase family protein 1Chr08:9065033–9071774 (-)6.17e-11
Glyma.08G118400 hypothetical protein AT4G18810:AT4G18810:NAD(P)-binding Rossmann-fold superfamily protein 1Chr08:9147404–9153858 (-)6.17e-11
Glyma.08G119300 hypothetical protein AT1G29330:ERD2:ER lumen protein retaining receptor family protein 1Chr08:9198213–9201688 (-)1.443e-11
Glyma.08G122500 hypothetical protein NA 1Chr08:9441329–9445315 (-)6.405e-17
Glyma.08G122600 hypothetical protein NA 1Chr08:9445153–9450502 (+)3.385e-11
Glyma.08G122700 hypothetical protein AT1G29350:AT1G29350:RNA polymerase II degradation factor-like protein (DUF1296) 1Chr08:9452604–9458932 (+)6.405e-17
Glyma.08G150100 hypothetical protein AT2G44450:BGLU15:beta glucosidase 15 1Chr08:11525692–11536927 (+)2.725e-11
Glyma.09G062900 hypothetical protein NA 1Chr09:6004419–6011041 (+)6.62e-11
Glyma.09G251800 hypothetical protein AT1G65380:CLV2:Leucine-rich repeat (LRR) family protein 1Chr09:47220796–47224266 (+)7.877e-11
Glyma.09G253800 hypothetical protein NA 1Chr09:47356240–47357763 (-)1.444e-11
Glyma.09G253900 hypothetical protein NA 1Chr09:47359742–47364806 (-)1.444e-11
Glyma.09G274900 hypothetical protein AT5G02280:AT5G02280:SNARE-like superfamily protein 1Chr09:49069946–49073277 (-)1.482e-13
Glyma.09G275100 hypothetical protein AT3G08760:ATSIK:Protein kinase superfamily protein 1Chr09:49079101–49084269 (-)1.482e-13
Glyma.09G275300 hypothetical protein NA 1Chr09:49094668–49096996 (-)1.482e-13
Glyma.09G275500 hypothetical protein NA 1Chr09:49105837–49106989 (+)6.545e-11
Glyma.09G275900 hypothetical protein AT5G01850:AT5G01850:Protein kinase superfamily protein 1Chr09:49128687–49133154 (-)1.482e-13
Glyma.09G276000 hypothetical protein NA 1Chr09:49131662–49132187 (+)1.482e-13
Glyma.09G276300 WNK10 AT3G51630:WNK5:with no lysine (K) kinase 5 1Chr09:49161113–49166087 (+)2.636e-12
Glyma.09G281400 hypothetical protein AT3G18620:AT3G18620:DHHC-type zinc finger family protein 1Chr09:49668985–49676216 (-)7.045e-11
Glyma.09G281700 hypothetical protein NA 1Chr09:49705303–49733182 (-)7.045e-11
Glyma.09G282900 hypothetical protein AT2G29090:CYP707A2:cytochrome P450, family 707, subfamily A, polypeptide 2 1Chr09:49863377–49871270 (+)1e-11
Glyma.11G024800 hypothetical protein NA 1Chr11:1754343–1759398 (+)1.549e-11
Glyma.12G049300 hypothetical protein NA 1Chr12:3538428–3539170 (-)2.265e-11
Glyma.12G054700 hypothetical protein AT3G45140:LOX2:lipoxygenase 2 1Chr12:3949453–3957386 (-)4.686e-11
Glyma.12G108600 hypothetical protein NA 1Chr12:9994609–9997302 (-)2.927e-11
Glyma.12G109500 hypothetical protein AT4G03415:PP2C52:Protein phosphatase 2C family protein 1Chr12:10308026–10314332 (-)2.927e-11
Glyma.12G114500 hypothetical protein AT4G22930:PYR4:pyrimidin 4 1Chr12:11396572–11400825 (-)8.413e-11
Glyma.12G114900 hypothetical protein NA 1Chr12:11457987–11462951 (-)8.413e-11
Glyma.12G205900 hypothetical protein NA 1Chr12:36622011–36625824 (+)6.629e-11
Glyma.13G095000 hypothetical protein NA 1Chr13:21005327–21006774 (-)8.812e-12
Glyma.13G156000 hypothetical protein AT2G07560:HA6:H[+]-ATPase 6__AT3G42640:HA8:H[+]-ATPase 8 1Chr13:27104338–27109785 (+)1.547e-11
Glyma.13G170600 ALDH2B6 aldehyde dehydrogenase family 2 member B6 AT1G23800:ALDH2B7:aldehyde dehydrogenase 2B7 1Chr13:28436396–28440865 (-)1.392e-12
Glyma.13G203200 hypothetical protein AT3G52105:AT3G52105:DIS3-exonuclease-like protein 1Chr13:31720004–31725252 (+)1.504e-13
Glyma.13G203300 hypothetical protein AT3G63530:BB:RING/U-box superfamily protein 1Chr13:31727841–31735910 (-)1.504e-13
Glyma.13G203700 hypothetical protein NA 1Chr13:31780982–31784218 (+)1.504e-13
Glyma.13G203900 hypothetical protein NA 1Chr13:31793697–31796601 (-)1.789e-17
Glyma.13G204000 hypothetical protein AT3G12650:AT3G12650:uncharacterized protein 1Chr13:31799233–31800440 (+)2.076e-11
Glyma.13G204200 hypothetical protein NA 1Chr13:31822330–31826011 (+)8.158e-13
Glyma.14G066800 hypothetical protein NA 1Chr14:5511222–5513114 (+)1.473e-11
Glyma.14G069500 hypothetical protein AT5G37810:NIP4;1:NOD26-like intrinsic protein 4;1 1Chr14:5822246–5825628 (-)1.279e-12
Glyma.14G087900 hypothetical protein NA 1Chr14:7887761–7897469 (+)2.326e-11
Glyma.15G124000 hypothetical protein NA 1Chr15:9845097–9849312 (-)1.768e-11
Glyma.15G124500 MLO-like protein 13 AT4G24250:MLO13:Seven transmembrane MLO family protein 1Chr15:9888761–9894068 (-)1.678e-12
Glyma.16G105100 hypothetical protein NA 1Chr16:21259552–21267517 (-)4.795e-11
Glyma.16G105400 hypothetical protein AT2G43040:NPG1:tetratricopeptide repeat (TPR)-containing protein 1Chr16:21357465–21364357 (-)1.377e-11
Glyma.16G117400 hypothetical protein NA 1Chr16:26234552–26238233 (-)1.771e-11
Glyma.16G118100 hypothetical protein AT2G17570:cPT1:Undecaprenyl pyrophosphate synthetase family protein 1Chr16:26324650–26336836 (+)1.188e-11
Glyma.16G140000 hypothetical protein AT5G01820:SR1:serine/threonine protein kinase 1 1Chr16:29738375–29739010 (+)6.089e-11
Glyma.16G205600 hypothetical protein AT4G10280:AT4G10280:RmlC-like cupins superfamily protein__AT4G10290:AT4G10290:RmlC-like cupins superfamily protein 1Chr16:36633000–36634978 (+)3.728e-11
Glyma.16G208100 hypothetical protein AT5G23530:CXE18:carboxyesterase 18 1Chr16:36776806–36778169 (+)8.366e-11
Glyma.16G209400 hypothetical protein AT1G17840:ABCG11:white-brown complex-like protein 1Chr16:36871978–36878151 (-)9.694e-12
Glyma.16G209900 hypothetical protein NA 1Chr16:36919141–36924601 (+)1.366e-11
Glyma.17G064000 hypothetical protein AT2G18840:AT2G18840:Integral membrane Yip1 family protein__AT4G30260:AT4G30260:Integral membrane Yip1 family protein 1Chr17:4924830–4930155 (-)1.843e-11
Glyma.17G064200 hypothetical protein AT5G57500:AT5G57500:Galactosyltransferase family protein 1Chr17:4943412–4944357 (-)1.843e-11
Glyma.17G251200 hypothetical protein NA 1Chr17:40605249–40607536 (+)3.617e-12
Glyma.17G251800 hypothetical protein NA 1Chr17:40633579–40636068 (+)2.211e-11
Glyma.17G251900 hypothetical protein AT1G19600:AT1G19600:pfkB-like carbohydrate kinase family protein 1Chr17:40641019–40644794 (+)2.211e-11
Glyma.19G011600 hypothetical protein NA 1Chr19:1111789–1116419 (+)1.299e-11
Glyma.19G011700 hypothetical protein AT3G01420:DOX1:Peroxidase superfamily protein 1Chr19:1123637–1130946 (+)1.299e-11
Glyma.19G012100 hypothetical protein AT3G28150:TBL22:TRICHOME BIREFRINGENCE-LIKE 22 1Chr19:1155711–1161298 (-)3.892e-11
Glyma.19G012300 hypothetical protein NA 1Chr19:1165111–1173031 (-)3.892e-11
Glyma.19G125300 hypothetical protein AT3G56880:AT3G56880:VQ motif-containing protein__AT2G41010:CAMBP25:calmodulin (CAM)-binding protein of 25 kDa 1Chr19:38346007–38347425 (-)8.23e-11
Glyma.19G125400 hypothetical protein AT3G12390:AT3G12390:Nascent polypeptide-associated complex (NAC), alpha subunit family protein 1Chr19:38371477–38374357 (-)8.23e-11
Glyma.19G125800 hypothetical protein AT2G40840:DPE2:disproportionating enzyme 2 1Chr19:38410642–38423531 (+)8.23e-11
Glyma.19G218100 hypothetical protein AT1G02390:GPAT2:glycerol-3-phosphate acyltransferase 2 1Chr19:47082133–47085750 (+)9.796e-11
Glyma.20G109600 hypothetical protein AT3G14290:PAE2:20S proteasome alpha subunit E2__AT1G53850:PAE1:20S proteasome alpha subunit E1 1Chr20:35200934–35205885 (-)8.859e-13
Glyma.20G109800 hypothetical protein AT2G35130:AT2G35130:Tetratricopeptide repeat (TPR)-like superfamily protein 1Chr20:35213258–35219502 (+)2.667e-13
Glyma.20G110000 hypothetical protein AT3G54260:TBL36:TRICHOME BIREFRINGENCE-LIKE 36 1Chr20:35229423–35231861 (+)8.052e-11
Glyma.20G179000 hypothetical protein NA 1Chr20:41630613–41632249 (-)3.597e-13