Soybean mGWAS DBExplore The Genetic Basis Of Soybean Metabolism Glycine max
Overview Annotation GWAS Evidence Associated genes

P51058

Metabolite ID
P51058
Deionized mass
728.5564 Da
Average m/z
729.5650
Average RT
27.3973
Adduct
[M+H]+
Association scope
Overlapping genes only
Associated genes
121
GWAS result file
Available
Open in Soybean Metabolome Repository

Candidate annotations

Search compound candidates by deionized mass and tolerance. Follow compound IDs for database records, or use name searches to explore chemistry and soybean literature. About candidate annotations

GWAS Evidence

Dataset: indexed GWAS records.

Settings

SNP counts, plot highlights, gene associations and downloads use P < 10⁻¹⁰. Changing the threshold updates this page together.

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Associated genes

121 genes linked to SNP records with P < 10⁻¹⁰ in the selected scope. Supporting SNP records are counted per feature–gene pair.

Gene ID Alias Description Arabidopsis ortholog Supporting SNP recordsGene interval (1-based)Minimum P
Glyma.06G305700 hypothetical protein AT2G05710:ACO3:aconitase 3 3Chr06:49451501–49461369 (-)1.521e-12
Glyma.08G226000 hypothetical protein AT3G13062:AT3G13062:Polyketide cyclase/dehydrase and lipid transport superfamily protein 3Chr08:18321377–18335864 (-)4.599e-12
Glyma.20G107200 hypothetical protein AT4G38540:AT4G38540:FAD/NAD(P)-binding oxidoreductase family protein 3Chr20:34984922–34988496 (+)2.425e-12
Glyma.20G122600 hypothetical protein AT2G01130:AT2G01130:DEA(D/H)-box RNA helicase family protein 3Chr20:36527607–36546140 (-)3.282e-13
Glyma.02G200700 hypothetical protein AT3G11560:AT3G11560:LETM1-like protein__AT5G06220:AT5G06220:LETM1-like protein 2Chr02:38435454–38459254 (-)2.543e-11
Glyma.02G202100 hypothetical protein AT3G52610:AT3G52610:GATA zinc finger protein 2Chr02:38707852–38719801 (+)4.533e-11
Glyma.03G242800 hypothetical protein AT4G08630:AT4G08630:fas-binding factor-like protein 2Chr03:44064511–44073939 (+)2.718e-11
Glyma.08G123500 hypothetical protein NA 2Chr08:9494946–9505931 (-)1.496e-12
Glyma.01G169700 hypothetical protein AT4G36410:UBC17:ubiquitin-conjugating enzyme 17 1Chr01:50715084–50719427 (-)6.671e-11
Glyma.01G169800 hypothetical protein AT4G36400:D2HGDH:FAD-linked oxidases family protein 1Chr01:50726088–50733347 (-)6.672e-11
Glyma.02G151500 hypothetical protein AT2G47990:SWA1:transducin family protein / WD-40 repeat family protein 1Chr02:15586732–15588774 (+)8.967e-11
Glyma.02G193800 hypothetical protein AT5G06470:AT5G06470:Glutaredoxin family protein 1Chr02:36706657–36712744 (-)7.683e-11
Glyma.02G200600 hypothetical protein AT3G11570:TBL8:TRICHOME BIREFRINGENCE-LIKE 8__AT5G06230:TBL9:TRICHOME BIREFRINGENCE-LIKE 9 1Chr02:38432334–38436063 (+)2.544e-11
Glyma.02G201100 hypothetical protein AT5G06200:CASP4:Uncharacterized protein family (UPF0497) 1Chr02:38497390–38499369 (-)2.544e-11
Glyma.02G201400 hypothetical protein AT5G06140:SNX1:sorting nexin 1 1Chr02:38539394–38547251 (+)2.543e-11
Glyma.02G204500 hypothetical protein NA 1Chr02:38980978–38982630 (-)4.626e-11
Glyma.02G205300 hypothetical protein NA 1Chr02:39037472–39038396 (-)9.025e-11
Glyma.02G293100 hypothetical protein AT3G20800:AT3G20800:Cell differentiation, Rcd1-like protein 1Chr02:47183443–47188007 (-)1.226e-11
Glyma.03G023000 hypothetical protein AT4G00220:JLO:Lateral organ boundaries (LOB) domain family protein 1Chr03:2423540–2428634 (-)1.194e-12
Glyma.03G041800 hypothetical protein NA 1Chr03:5307518–5311842 (+)3.692e-11
Glyma.03G041900 hypothetical protein NA 1Chr03:5313339–5315847 (-)2.648e-13
Glyma.03G147400 hypothetical protein NA 1Chr03:36293698–36295294 (+)5.095e-12
Glyma.03G209700 hypothetical protein NA 1Chr03:41646792–41648527 (+)1.716e-16
Glyma.04G015500 hypothetical protein AT2G33670:MLO5:Seven transmembrane MLO family protein 1Chr04:1176657–1181234 (-)2.7e-11
Glyma.04G084200 hypothetical protein AT2G25830:AT2G25830:YebC-like protein 1Chr04:7137351–7146570 (-)1.94e-13
Glyma.04G086600 hypothetical protein NA 1Chr04:7374806–7380808 (+)3.869e-11
Glyma.04G234900 hypothetical protein AT5G53000:TAP46:2A phosphatase associated protein of 46 kD 1Chr04:50332008–50336222 (-)9.419e-11
Glyma.05G124700 hypothetical protein NA 1Chr05:31807311–31817648 (+)1.761e-11
Glyma.05G127500 hypothetical protein NA 1Chr05:32041345–32049554 (+)9.11e-12
Glyma.05G127800 hypothetical protein AT4G18240:SS4:starch synthase 4 1Chr05:32125404–32138244 (+)1.406e-11
Glyma.05G127900 SAD1 AT5G48870:SAD1:Small nuclear ribonucleoprotein family protein 1Chr05:32139620–32141770 (-)1.406e-11
Glyma.05G128200 hypothetical protein AT5G46330:FLS2:Leucine-rich receptor-like protein kinase family protein 1Chr05:32158034–32162343 (-)1.406e-11
Glyma.05G236400 hypothetical protein AT1G23210:GH9B6:glycosyl hydrolase 9B6__AT1G70710:GH9B1:glycosyl hydrolase 9B1 1Chr05:41274513–41279615 (-)6.943e-11
Glyma.05G236700 hypothetical protein AT4G33760:AT4G33760:tRNA synthetase class II (D, K and N) family protein 1Chr05:41301540–41310727 (+)1.478e-12
Glyma.06G112300 hypothetical protein AT1G44780:AT1G44780:translation initiation factor__AT4G08310:AT4G08310:DNA ligase 1Chr06:9113982–9118848 (-)5.908e-14
Glyma.06G112600 hypothetical protein AT1G77620:AT1G77620:P-loop containing nucleoside triphosphate hydrolases superfamily protein 1Chr06:9134358–9144986 (+)5.908e-14
Glyma.06G112700 hypothetical protein AT1G44760:AT1G44760:Adenine nucleotide alpha hydrolases-like superfamily protein 1Chr06:9156973–9158659 (+)5.909e-14
Glyma.06G133700 Pyridoxal reductase, chloroplastic AT5G53580:PLR1:NAD(P)-linked oxidoreductase superfamily protein 1Chr06:10995438–10999422 (-)9.74e-13
Glyma.06G136200 hypothetical protein AT5G54170:AT5G54170:Polyketide cyclase/dehydrase and lipid transport superfamily protein 1Chr06:11160066–11162505 (-)9.893e-11
Glyma.06G305300 hypothetical protein NA 1Chr06:49431590–49435985 (-)1.521e-12
Glyma.06G305600 hypothetical protein NA 1Chr06:49446542–49450635 (-)1.521e-12
Glyma.07G068400 hypothetical protein AT1G29320:AT1G29320:Transducin/WD40 repeat-like superfamily protein 1Chr07:6173172–6180430 (-)4.282e-11
Glyma.07G068600 hypothetical protein NA 1Chr07:6192764–6197166 (+)4.282e-11
Glyma.07G068700 hypothetical protein AT2G46060:AT2G46060:transmembrane protein-like protein 1Chr07:6200187–6208590 (+)1.783e-11
Glyma.07G068800 hypothetical protein NA 1Chr07:6211775–6221107 (-)1.783e-11
Glyma.07G069100 hypothetical protein NA 1Chr07:6246145–6250192 (+)4.282e-11
Glyma.07G069400 hypothetical protein AT2G46020:BRM:transcription regulatory protein SNF2 1Chr07:6270176–6283087 (-)6.257e-12
Glyma.07G069600 hypothetical protein AT4G00370:ANTR2:Major facilitator superfamily protein 1Chr07:6307073–6313498 (-)6.546e-11
Glyma.08G016700 hypothetical protein AT1G63840:AT1G63840:RING/U-box superfamily protein 1Chr08:1330226–1331366 (-)3.342e-19
Glyma.08G112600 hypothetical protein NA 1Chr08:8660670–8663379 (-)2.575e-11
Glyma.08G112700 hypothetical protein NA 1Chr08:8661027–8661191 (+)2.575e-11
Glyma.08G113900 hypothetical protein AT3G13560:AT3G13560:O-Glycosyl hydrolases family 17 protein 1Chr08:8730526–8734718 (-)2.032e-11
Glyma.08G114200 hypothetical protein AT4G08810:SUB1:calcium ion binding protein 1Chr08:8743328–8745667 (-)9.78e-11
Glyma.08G114400 hypothetical protein AT4G25650:ACD1-LIKE:ACD1-like protein 1Chr08:8750828–8756629 (-)9.78e-11
Glyma.08G114500 hypothetical protein AT4G38500:AT4G38500:Sept9 (DUF616) 1Chr08:8757033–8762145 (+)9.78e-11
Glyma.08G114600 hypothetical protein NA 1Chr08:8763388–8766206 (-)9.274e-11
Glyma.08G114700 hypothetical protein AT3G13600:AT3G13600:calmodulin-binding family protein 1Chr08:8768854–8772973 (-)4.924e-13
Glyma.08G122200 hypothetical protein NA 1Chr08:9416766–9429995 (-)1.496e-12
Glyma.08G122300 hypothetical protein AT1G29390:COR314-TM2:cold regulated 314 thylakoid membrane 2 1Chr08:9435391–9437279 (+)1.496e-12
Glyma.08G122500 hypothetical protein NA 1Chr08:9441329–9445315 (-)1.496e-12
Glyma.08G122700 hypothetical protein AT1G29350:AT1G29350:RNA polymerase II degradation factor-like protein (DUF1296) 1Chr08:9452604–9458932 (+)1.496e-12
Glyma.08G204800 hypothetical protein AT3G16140:PSAH-1:photosystem I subunit H-1 1Chr08:16601039–16602646 (+)3.363e-13
Glyma.08G211800 hypothetical protein NA 1Chr08:17104514–17105442 (-)1.232e-11
Glyma.08G226100 hypothetical protein AT3G13060:ECT5:evolutionarily conserved C-terminal region 5 1Chr08:18339384–18347070 (-)4.599e-12
Glyma.08G226400 hypothetical protein AT3G13050:NiaP:Major facilitator superfamily protein 1Chr08:18370226–18374060 (-)4.599e-12
Glyma.09G058900 hypothetical protein NA 1Chr09:5397968–5404650 (-)6.328e-13
Glyma.09G133800 hypothetical protein NA 1Chr09:33268295–33269240 (+)3.887e-12
Glyma.09G251800 hypothetical protein AT1G65380:CLV2:Leucine-rich repeat (LRR) family protein 1Chr09:47220796–47224266 (+)4.129e-11
Glyma.09G253800 hypothetical protein NA 1Chr09:47356240–47357763 (-)5.662e-11
Glyma.09G253900 hypothetical protein NA 1Chr09:47359742–47364806 (-)5.662e-11
Glyma.10G078700 hypothetical protein NA 1Chr10:8882318–8903950 (+)5.84e-14
Glyma.10G079100 hypothetical protein NA 1Chr10:8960669–8962364 (-)5.84e-14
Glyma.10G079800 hypothetical protein NA 1Chr10:9223520–9228511 (-)5.84e-14
Glyma.10G080000 hypothetical protein AT3G11660:NHL1:NDR1/HIN1-like 1__AT3G52470:AT3G52470:Late embryosis abundant (LEA) hydroxyproline-rich glycoprotein fam… 1Chr10:9258476–9260697 (-)5.84e-14
Glyma.10G081200 hypothetical protein NA 1Chr10:9600771–9603988 (-)3.097e-14
Glyma.10G081700 hypothetical protein NA 1Chr10:9752508–9758422 (+)1.522e-15
Glyma.11G049700 hypothetical protein NA 1Chr11:3731308–3734534 (+)6.227e-11
Glyma.11G094700 hypothetical protein AT5G08280:HEMC:hydroxymethylbilane synthase 1Chr11:7190632–7195838 (-)1.972e-11
Glyma.11G095100 hypothetical protein NA 1Chr11:7212438–7214276 (-)5.97e-15
Glyma.12G114500 hypothetical protein AT4G22930:PYR4:pyrimidin 4 1Chr12:11396572–11400825 (-)6.419e-12
Glyma.12G114900 hypothetical protein NA 1Chr12:11457987–11462951 (-)6.419e-12
Glyma.13G156000 hypothetical protein AT2G07560:HA6:H[+]-ATPase 6__AT3G42640:HA8:H[+]-ATPase 8 1Chr13:27104338–27109785 (+)5.907e-11
Glyma.13G201600 hypothetical protein NA 1Chr13:31521512–31522992 (+)9.666e-11
Glyma.14G094900 hypothetical protein AT1G60960:IRT3:iron regulated transporter 3 1Chr14:8824846–8827258 (-)3.583e-11
Glyma.15G009800 hypothetical protein NA 1Chr15:753771–758859 (-)7.291e-15
Glyma.15G121100 hypothetical protein NA 1Chr15:9567797–9570248 (+)1.361e-11
Glyma.15G121300 hypothetical protein AT5G47760:PGLP2:2-phosphoglycolate phosphatase 2 1Chr15:9584685–9590201 (-)1.546e-11
Glyma.15G121500 hypothetical protein AT1G03370:AT1G03370:C2 calcium/lipid-binding and GRAM domain containing protein 1Chr15:9602794–9615281 (+)1.361e-11
Glyma.15G121800 hypothetical protein NA 1Chr15:9643746–9648073 (+)1.361e-11
Glyma.15G124000 hypothetical protein NA 1Chr15:9845097–9849312 (-)1.012e-14
Glyma.15G124500 MLO-like protein 13 AT4G24250:MLO13:Seven transmembrane MLO family protein 1Chr15:9888761–9894068 (-)2.69e-12
Glyma.16G025300 hypothetical protein NA 1Chr16:2438122–2440528 (-)1.063e-11
Glyma.16G025400 hypothetical protein AT2G46430:CNGC3:cyclic nucleotide gated channel 3 1Chr16:2443212–2450834 (-)1.063e-11
Glyma.16G121500 hypothetical protein NA 1Chr16:27007186–27010856 (+)7.444e-11
Glyma.16G139500 hypothetical protein AT5G66550:AT5G66550:Maf-like protein 1Chr16:29686243–29690410 (-)3.11e-11
Glyma.16G210300 hypothetical protein AT1G73340:AT1G73340:Cytochrome P450 superfamily protein 1Chr16:36943073–36948828 (+)7.102e-11
Glyma.16G210400 hypothetical protein AT1G73350:AT1G73350:ankyrin repeat protein 1Chr16:36949685–36953467 (+)7.102e-11
Glyma.17G004500 hypothetical protein AT5G47800:AT5G47800:Phototropic-responsive NPH3 family protein 1Chr17:444580–451107 (-)1.929e-11
Glyma.17G005900 hypothetical protein AT4G17215:AT4G17215:Pollen Ole e 1 allergen and extensin family protein__AT2G40113:AT2G40113:Pollen Ole e 1 allergen an… 1Chr17:546212–548525 (+)1.929e-11
Glyma.17G215500 KNAT5 NA 1Chr17:36212363–36217688 (-)2.289e-13
Glyma.17G257100 hypothetical protein AT1G75660:XRN3:5'-3' exoribonuclease 3 1Chr17:41113121–41125026 (+)2.679e-11
Glyma.18G003300 hypothetical protein NA 1Chr18:276941–280909 (+)4.473e-11
Glyma.18G201700 hypothetical protein NA 1Chr18:48175554–48180264 (+)3.441e-11
Glyma.18G298600 hypothetical protein AT1G44960:AT1G44960:SNARE associated Golgi protein family 1Chr18:57614292–57617223 (+)7.281e-11
Glyma.19G128200 hypothetical protein NA 1Chr19:38739769–38743404 (+)1.87e-11
Glyma.19G150000 hypothetical protein AT3G58060:AT3G58060:Cation efflux family protein 1Chr19:41018746–41025024 (+)3.116e-12
Glyma.19G247800 hypothetical protein NA 1Chr19:49385792–49388122 (-)1.232e-12
Glyma.20G019500 hypothetical protein AT1G21065:AT1G21065:secondary thiamine-phosphate synthase enzyme 1Chr20:2039210–2040459 (+)4.075e-14
Glyma.20G019700 hypothetical protein NA 1Chr20:2047020–2050862 (-)3.784e-13
Glyma.20G019800 hypothetical protein AT1G49350:AT1G49350:pfkB-like carbohydrate kinase family protein 1Chr20:2051817–2057262 (+)2.406e-11
Glyma.20G098400 hypothetical protein AT1G56340:CRT1a:calreticulin 1a__AT1G09210:CRT1b:calreticulin 1b 1Chr20:34151918–34155417 (+)2.08e-11
Glyma.20G105100 hypothetical protein NA 1Chr20:34737596–34737811 (-)8.486e-11
Glyma.20G105500 hypothetical protein AT4G38540:AT4G38540:FAD/NAD(P)-binding oxidoreductase family protein__AT5G05320:AT5G05320:FAD/NAD(P)-binding oxidoreduc… 1Chr20:34813357–34815998 (-)7.291e-11
Glyma.20G106900 hypothetical protein NA 1Chr20:34962043–34967985 (+)5.453e-12
Glyma.20G107500 hypothetical protein AT2G16910:AMS:basic helix-loop-helix (bHLH) DNA-binding superfamily protein 1Chr20:35011922–35015196 (-)1.047e-12
Glyma.20G107700 hypothetical protein AT2G16860:AT2G16860:GCIP-interacting family protein 1Chr20:35033414–35036538 (+)6.311e-11
Glyma.20G108700 hypothetical protein AT1G09290:AT1G09290:uncharacterized protein 1Chr20:35109869–35115132 (-)7.307e-11
Glyma.20G108900 hypothetical protein AT4G24175:AT4G24175:kinesin-like protein 1Chr20:35119868–35122488 (+)1.07e-11
Glyma.20G109600 hypothetical protein AT3G14290:PAE2:20S proteasome alpha subunit E2__AT1G53850:PAE1:20S proteasome alpha subunit E1 1Chr20:35200934–35205885 (-)1.968e-11
Glyma.20G109800 hypothetical protein AT2G35130:AT2G35130:Tetratricopeptide repeat (TPR)-like superfamily protein 1Chr20:35213258–35219502 (+)2.937e-13
Glyma.20G122300 hypothetical protein NA 1Chr20:36506583–36511326 (-)3.282e-13