Overview Annotation GWAS Evidence Associated genes

P50939

Metabolite ID
P50939
Deionized mass
392.2459 Da
Average m/z
393.2569
Average RT
27.2786
Adduct
[M+H]+
Association scope
Overlapping genes only
Associated genes
24
GWAS result file
Available

Candidate annotations

Search compound candidates by deionized mass and tolerance. Follow compound IDs for database records, or use name searches to explore chemistry and soybean literature. About candidate annotations

GWAS Evidence

Dataset: indexed GWAS records.

Settings

SNP counts, plot highlights, gene associations and downloads use P < 10⁻¹⁰. Changing the threshold updates this page together.

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This Q–Q plot describes the indexed records. For downsampled files, it does not represent the distribution across all tested variants. Data coverage

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Associated genes

24 genes linked to SNP records with P < 10⁻¹⁰ in the selected scope. Supporting SNP records are counted per feature–gene pair.

Gene ID Alias Description Arabidopsis ortholog Supporting SNP recordsGene interval (1-based)Minimum P
Glyma.16G118100 hypothetical protein AT2G17570:cPT1:Undecaprenyl pyrophosphate synthetase family protein 2Chr16:26324650–26336836 (+)1.386e-13
Glyma.16G196900 hypothetical protein NA 2Chr16:35841279–35846894 (-)8.426e-11
Glyma.05G137500 hypothetical protein NA 1Chr05:33012282–33015297 (-)7.329e-11
Glyma.05G137600 hypothetical protein NA 1Chr05:33018107–33020120 (-)9.891e-11
Glyma.06G126900 hypothetical protein AT5G04520:AT5G04520:3-oxoacyl-acyl-carrier synthase-like protein (Protein of unknown function DUF455) 1Chr06:10403126–10408307 (-)5.302e-11
Glyma.07G017600 hypothetical protein NA 1Chr07:1415837–1422680 (+)4.582e-12
Glyma.09G052700 hypothetical protein AT1G31120:KUP10:K+ uptake permease 10 1Chr09:4617652–4626364 (+)8.644e-11
Glyma.09G246700 hypothetical protein AT1G22840:CYTC-1:CYTOCHROME C-1 1Chr09:46835469–46838091 (-)3.754e-11
Glyma.15G124500 MLO-like protein 13 AT4G24250:MLO13:Seven transmembrane MLO family protein 1Chr15:9888761–9894068 (-)3.384e-11
Glyma.16G117400 hypothetical protein NA 1Chr16:26234552–26238233 (-)2.16e-12
Glyma.16G119300 hypothetical protein NA 1Chr16:26643902–26644416 (+)7.449e-11
Glyma.16G119400 hypothetical protein NA 1Chr16:26684278–26687087 (+)2.911e-14
Glyma.16G189000 hypothetical protein NA 1Chr16:35160485–35167548 (-)1.282e-13
Glyma.16G189100 hypothetical protein AT1G05190:emb2394:Ribosomal protein L6 family 1Chr16:35170253–35173950 (-)1.891e-14
Glyma.16G189200 hypothetical protein AT3G48970:AT3G48970:Heavy metal transport/detoxification superfamily protein 1Chr16:35177846–35179798 (+)8.378e-15
Glyma.16G194000 hypothetical protein AT3G48900:AT3G48900:single-stranded DNA endonuclease family protein 1Chr16:35625666–35634395 (-)9.235e-11
Glyma.16G194100 hypothetical protein NA 1Chr16:35633570–35637343 (+)9.235e-11
Glyma.16G196200 HSF-32 heat stress transcription factor 32 AT5G62020:HSFB2A:heat shock transcription factor B2A 1Chr16:35760178–35761852 (+)1.082e-11
Glyma.16G209300 hypothetical protein NA 1Chr16:36856833–36863994 (-)3.386e-11
Glyma.18G052100 hypothetical protein AT2G30470:HSI2:B3 domain-containing transcription repressor VAL1 1Chr18:4503897–4512049 (+)3.355e-14
Glyma.18G052300 hypothetical protein NA 1Chr18:4521958–4525815 (+)6.812e-11
Glyma.18G112600 hypothetical protein NA 1Chr18:13398219–13405422 (+)1.375e-11
Glyma.18G266500 hypothetical protein NA 1Chr18:55088284–55091427 (-)3.485e-11
Glyma.19G005200 hypothetical protein AT3G27640:AT3G27640:Transducin/WD40 repeat-like superfamily protein 1Chr19:472201–476152 (-)1.199e-12