Soybean mGWAS DBExplore The Genetic Basis Of Soybean Metabolism Glycine max
Overview Annotation GWAS Evidence Associated genes

P50924

Metabolite ID
P50924
Deionized mass
512.3312 Da
Average m/z
513.3375
Average RT
27.2484
Adduct
[M+H]+
Association scope
Overlapping genes only
Associated genes
102
GWAS result file
Available
Open in Soybean Metabolome Repository

Candidate annotations

Search compound candidates by deionized mass and tolerance. Follow compound IDs for database records, or use name searches to explore chemistry and soybean literature. About candidate annotations

GWAS Evidence

Dataset: indexed GWAS records.

Settings

SNP counts, plot highlights, gene associations and downloads use P < 10⁻¹⁰. Changing the threshold updates this page together.

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Associated genes

102 genes linked to SNP records with P < 10⁻¹⁰ in the selected scope. Supporting SNP records are counted per feature–gene pair.

Gene ID Alias Description Arabidopsis ortholog Supporting SNP recordsGene interval (1-based)Minimum P
Glyma.16G209300 hypothetical protein NA 4Chr16:36856833–36863994 (-)1.988e-14
Glyma.06G305700 hypothetical protein AT2G05710:ACO3:aconitase 3 3Chr06:49451501–49461369 (-)3.592e-14
Glyma.16G210200 hypothetical protein NA 3Chr16:36933402–36938940 (+)1.544e-11
Glyma.02G188300 hypothetical protein NA 2Chr02:35008552–35027979 (-)3.329e-12
Glyma.02G200700 hypothetical protein AT3G11560:AT3G11560:LETM1-like protein__AT5G06220:AT5G06220:LETM1-like protein 2Chr02:38435454–38459254 (-)6.739e-11
Glyma.02G202100 hypothetical protein AT3G52610:AT3G52610:GATA zinc finger protein 2Chr02:38707852–38719801 (+)5.489e-11
Glyma.06G130300 hypothetical protein AT5G53080:AT5G53080:Tetratricopeptide repeat (TPR)-like superfamily protein 2Chr06:10709045–10716245 (-)7.575e-16
Glyma.08G123500 hypothetical protein NA 2Chr08:9494946–9505931 (-)2.592e-14
Glyma.09G277300 hypothetical protein NA 2Chr09:49271634–49276648 (-)1.419e-11
Glyma.14G093100 hypothetical protein NA 2Chr14:8654730–8655892 (-)1.676e-15
Glyma.14G149300 hypothetical protein NA 2Chr14:32235308–32258014 (+)4.083e-12
Glyma.16G031600 hypothetical protein NA 2Chr16:2964569–2985013 (+)4.809e-16
Glyma.19G011800 hypothetical protein AT3G01420:DOX1:Peroxidase superfamily protein 2Chr19:1134716–1143232 (+)6.745e-11
Glyma.20G107200 hypothetical protein AT4G38540:AT4G38540:FAD/NAD(P)-binding oxidoreductase family protein 2Chr20:34984922–34988496 (+)7.631e-11
Glyma.01G032400 hypothetical protein NA 1Chr01:3404831–3411453 (+)2.266e-13
Glyma.01G037200 hypothetical protein NA 1Chr01:3946315–3948100 (-)3.358e-11
Glyma.01G120000 hypothetical protein NA 1Chr01:41270985–41274854 (+)1.825e-11
Glyma.02G193800 hypothetical protein AT5G06470:AT5G06470:Glutaredoxin family protein 1Chr02:36706657–36712744 (-)2.454e-11
Glyma.02G200600 hypothetical protein AT3G11570:TBL8:TRICHOME BIREFRINGENCE-LIKE 8__AT5G06230:TBL9:TRICHOME BIREFRINGENCE-LIKE 9 1Chr02:38432334–38436063 (+)6.739e-11
Glyma.02G201100 hypothetical protein AT5G06200:CASP4:Uncharacterized protein family (UPF0497) 1Chr02:38497390–38499369 (-)6.739e-11
Glyma.02G201400 hypothetical protein AT5G06140:SNX1:sorting nexin 1 1Chr02:38539394–38547251 (+)6.739e-11
Glyma.02G205400 hypothetical protein AT5G57880:MPS1:multipolar spindle 1 1Chr02:39040135–39043181 (-)1.284e-12
Glyma.02G265700 hypothetical protein NA 1Chr02:45059017–45060529 (-)7.165e-12
Glyma.02G293100 hypothetical protein AT3G20800:AT3G20800:Cell differentiation, Rcd1-like protein 1Chr02:47183443–47188007 (-)5.895e-11
Glyma.02G294200 hypothetical protein AT3G20290:EHD1:EPS15 homology domain 1 1Chr02:47256480–47263517 (+)3.372e-11
Glyma.02G294900 hypothetical protein AT5G55220:AT5G55220:trigger factor type chaperone family protein 1Chr02:47300149–47306133 (+)2.93e-11
Glyma.02G295000 hypothetical protein AT4G26770:AT4G26770:Phosphatidate cytidylyltransferase family protein 1Chr02:47306160–47312036 (-)2.93e-11
Glyma.03G023000 hypothetical protein AT4G00220:JLO:Lateral organ boundaries (LOB) domain family protein 1Chr03:2423540–2428634 (-)3.942e-12
Glyma.03G209700 hypothetical protein NA 1Chr03:41646792–41648527 (+)2.744e-12
Glyma.04G018000 hypothetical protein AT5G42310:AT5G42310:Pentatricopeptide repeat (PPR-like) superfamily protein 1Chr04:1402993–1407323 (-)6.564e-11
Glyma.04G084200 hypothetical protein AT2G25830:AT2G25830:YebC-like protein 1Chr04:7137351–7146570 (-)5.732e-11
Glyma.05G127500 hypothetical protein NA 1Chr05:32041345–32049554 (+)4.484e-11
Glyma.05G127800 hypothetical protein AT4G18240:SS4:starch synthase 4 1Chr05:32125404–32138244 (+)9.16e-11
Glyma.05G127900 SAD1 AT5G48870:SAD1:Small nuclear ribonucleoprotein family protein 1Chr05:32139620–32141770 (-)9.16e-11
Glyma.05G128200 hypothetical protein AT5G46330:FLS2:Leucine-rich receptor-like protein kinase family protein 1Chr05:32158034–32162343 (-)9.16e-11
Glyma.05G224700 hypothetical protein NA 1Chr05:40351005–40361888 (+)3.12e-12
Glyma.05G226000 hypothetical protein AT5G19730:AT5G19730:Pectin lyase-like superfamily protein 1Chr05:40458098–40461736 (+)6.878e-12
Glyma.05G236400 hypothetical protein AT1G23210:GH9B6:glycosyl hydrolase 9B6__AT1G70710:GH9B1:glycosyl hydrolase 9B1 1Chr05:41274513–41279615 (-)3.497e-13
Glyma.05G236700 hypothetical protein AT4G33760:AT4G33760:tRNA synthetase class II (D, K and N) family protein 1Chr05:41301540–41310727 (+)3.066e-15
Glyma.05G237800 hypothetical protein AT1G48790:AMSH1:associated molecule with the SH3 domain of STAM 1 1Chr05:41406807–41413022 (-)2.517e-12
Glyma.06G129400 hypothetical protein AT5G24300:SS1:Glycogen/starch synthases, ADP-glucose type 1Chr06:10632042–10640023 (+)1.074e-13
Glyma.06G129800 hypothetical protein AT5G53030:AT5G53030:uncharacterized protein 1Chr06:10667029–10669377 (+)5.484e-16
Glyma.06G130100 hypothetical protein AT3G49290:ABIL2:ABL interactor-like protein 2 1Chr06:10695256–10699675 (+)5.484e-16
Glyma.06G130700 hypothetical protein AT5G53060:RCF3:RNA-binding KH domain-containing protein 1Chr06:10742110–10747597 (-)1.141e-13
Glyma.06G203300 hypothetical protein AT1G18640:PSP:3-phosphoserine phosphatase 1Chr06:19025714–19030363 (+)4.274e-11
Glyma.06G261900 hypothetical protein NA 1Chr06:44875369–44879702 (-)1.274e-11
Glyma.06G305300 hypothetical protein NA 1Chr06:49431590–49435985 (-)3.592e-14
Glyma.06G305600 hypothetical protein NA 1Chr06:49446542–49450635 (-)3.592e-14
Glyma.07G015700 hypothetical protein AT1G79750:NADP-ME4:NADP-malic enzyme 4 1Chr07:1244977–1251198 (-)8.818e-11
Glyma.08G122200 hypothetical protein NA 1Chr08:9416766–9429995 (-)2.592e-14
Glyma.08G122300 hypothetical protein AT1G29390:COR314-TM2:cold regulated 314 thylakoid membrane 2 1Chr08:9435391–9437279 (+)2.592e-14
Glyma.08G122500 hypothetical protein NA 1Chr08:9441329–9445315 (-)2.592e-14
Glyma.08G122700 hypothetical protein AT1G29350:AT1G29350:RNA polymerase II degradation factor-like protein (DUF1296) 1Chr08:9452604–9458932 (+)2.592e-14
Glyma.08G182400 hypothetical protein NA 1Chr08:14625596–14626713 (+)3.367e-11
Glyma.08G204800 hypothetical protein AT3G16140:PSAH-1:photosystem I subunit H-1 1Chr08:16601039–16602646 (+)3.057e-11
Glyma.08G211800 hypothetical protein NA 1Chr08:17104514–17105442 (-)1.165e-11
Glyma.09G082000 hypothetical protein NA 1Chr09:9638564–9650178 (+)2.698e-12
Glyma.09G084300 hypothetical protein AT2G34680:AIR9:Outer arm dynein light chain 1 protein 1Chr09:10129602–10197250 (-)1.641e-11
Glyma.09G186700 hypothetical protein AT1G20050:HYD1:C-8,7 sterol isomerase 1Chr09:41147591–41150204 (+)1.102e-11
Glyma.09G270500 hypothetical protein AT1G09780:iPGAM1:Phosphoglycerate mutase, 2,3-bisphosphoglycerate-independent 1Chr09:48745649–48751140 (+)7.771e-11
Glyma.09G282900 hypothetical protein AT2G29090:CYP707A2:cytochrome P450, family 707, subfamily A, polypeptide 2 1Chr09:49863377–49871270 (+)3.567e-12
Glyma.10G081700 hypothetical protein NA 1Chr10:9752508–9758422 (+)4.022e-12
Glyma.10G214700 hypothetical protein AT1G72000:A/N-InvF:Plant neutral invertase family protein__AT1G22650:A/N-InvD:Plant neutral invertase family protein__A… 1Chr10:44674211–44679550 (-)8.621e-11
Glyma.11G049700 hypothetical protein NA 1Chr11:3731308–3734534 (+)3.211e-11
Glyma.11G064300 hypothetical protein AT4G36780:BEH2:BES1/BZR1 homolog 2 1Chr11:4849799–4851673 (+)8.999e-11
Glyma.11G125600 hypothetical protein AT2G46200:AT2G46200:U11/U12 small nuclear ribonucleoprotein 1Chr11:9540747–9545520 (-)7.828e-11
Glyma.12G049300 hypothetical protein NA 1Chr12:3538428–3539170 (-)8.25e-14
Glyma.12G054700 hypothetical protein AT3G45140:LOX2:lipoxygenase 2 1Chr12:3949453–3957386 (-)8.638e-11
Glyma.13G161900 PAP25 purple acid phosphatase AT5G34850:PAP26:purple acid phosphatase 26 1Chr13:27748190–27752685 (-)1.085e-11
Glyma.13G181100 hypothetical protein AT2G47960:AT2G47960:trafficking protein particle complex subunit-like protein 1Chr13:29426889–29433599 (-)3.387e-14
Glyma.14G094900 hypothetical protein AT1G60960:IRT3:iron regulated transporter 3 1Chr14:8824846–8827258 (-)5.253e-11
Glyma.14G135100 hypothetical protein AT4G31540:EXO70G1:exocyst subunit exo70 family protein G1 1Chr14:23623422–23626499 (-)8.777e-11
Glyma.14G148800 hypothetical protein AT1G44760:AT1G44760:Adenine nucleotide alpha hydrolases-like superfamily protein 1Chr14:32154755–32157298 (+)4.083e-12
Glyma.14G191400 hypothetical protein NA 1Chr14:45610980–45612600 (+)2.605e-11
Glyma.14G201600 hypothetical protein NA 1Chr14:46703283–46706500 (+)2.06e-11
Glyma.14G201700 hypothetical protein NA 1Chr14:46711634–46715644 (-)2.06e-11
Glyma.15G009800 hypothetical protein NA 1Chr15:753771–758859 (-)1.278e-12
Glyma.15G124000 hypothetical protein NA 1Chr15:9845097–9849312 (-)1.113e-14
Glyma.16G020200 hypothetical protein NA 1Chr16:1828561–1835982 (-)8.03e-11
Glyma.16G032000 hypothetical protein AT4G01270:AT4G01270:RING/U-box superfamily protein 1Chr16:3031286–3036010 (+)7.887e-13
Glyma.16G139500 hypothetical protein AT5G66550:AT5G66550:Maf-like protein 1Chr16:29686243–29690410 (-)5.341e-11
Glyma.16G207900 hypothetical protein AT5G08450:AT5G08450:zinc finger CCCH domain protein 1Chr16:36754888–36763450 (+)1.67e-11
Glyma.16G208500 EIF6 AT3G55620:eIF6A:Translation initiation factor IF6 1Chr16:36806718–36809299 (+)1.503e-12
Glyma.16G209900 hypothetical protein NA 1Chr16:36919141–36924601 (+)1.544e-11
Glyma.16G210300 hypothetical protein AT1G73340:AT1G73340:Cytochrome P450 superfamily protein 1Chr16:36943073–36948828 (+)2.898e-13
Glyma.16G210400 hypothetical protein AT1G73350:AT1G73350:ankyrin repeat protein 1Chr16:36949685–36953467 (+)2.898e-13
Glyma.18G045700 hypothetical protein NA 1Chr18:3956176–3958846 (+)1.93e-11
Glyma.19G006900 hypothetical protein AT5G14700:AT5G14700:NAD(P)-binding Rossmann-fold superfamily protein 1Chr19:686556–692466 (-)9.591e-11
Glyma.19G011700 hypothetical protein AT3G01420:DOX1:Peroxidase superfamily protein 1Chr19:1123637–1130946 (+)2.292e-11
Glyma.19G012100 hypothetical protein AT3G28150:TBL22:TRICHOME BIREFRINGENCE-LIKE 22 1Chr19:1155711–1161298 (-)3.967e-14
Glyma.19G012300 hypothetical protein NA 1Chr19:1165111–1173031 (-)3.967e-14
Glyma.19G119100 hypothetical protein AT3G03650:EDA5:Exostosin family protein 1Chr19:37668759–37672434 (+)2.21e-11
Glyma.19G128200 hypothetical protein NA 1Chr19:38739769–38743404 (+)6.915e-13
Glyma.19G147000 hypothetical protein NA 1Chr19:40784257–40785271 (-)2.867e-12
Glyma.19G147100 hypothetical protein NA 1Chr19:40799107–40802473 (+)2.867e-12
Glyma.19G218100 hypothetical protein AT1G02390:GPAT2:glycerol-3-phosphate acyltransferase 2 1Chr19:47082133–47085750 (+)5.36e-11
Glyma.20G022500 hypothetical protein NA 1Chr20:2342943–2353164 (+)4.721e-11
Glyma.20G107900 hypothetical protein NA 1Chr20:35044042–35046452 (-)4.068e-11
Glyma.20G108000 hypothetical protein NA 1Chr20:35047833–35051623 (-)5.527e-11
Glyma.20G109600 hypothetical protein AT3G14290:PAE2:20S proteasome alpha subunit E2__AT1G53850:PAE1:20S proteasome alpha subunit E1 1Chr20:35200934–35205885 (-)2.728e-13
Glyma.20G109800 hypothetical protein AT2G35130:AT2G35130:Tetratricopeptide repeat (TPR)-like superfamily protein 1Chr20:35213258–35219502 (+)7.045e-14
Glyma.20G110000 hypothetical protein AT3G54260:TBL36:TRICHOME BIREFRINGENCE-LIKE 36 1Chr20:35229423–35231861 (+)7.142e-12