Overview Annotation GWAS Evidence Associated genes

P50876

Metabolite ID
P50876
Deionized mass
352.6530 Da
Average m/z
353.6589
Average RT
27.2203
Adduct
[M+H]+
Association scope
Overlapping genes only
Associated genes
18
GWAS result file
Available

Candidate annotations

Search compound candidates by deionized mass and tolerance. Follow compound IDs for database records, or use name searches to explore chemistry and soybean literature. About candidate annotations

GWAS Evidence

Dataset: indexed GWAS records.

Settings

SNP counts, plot highlights, gene associations and downloads use P < 10⁻¹⁰. Changing the threshold updates this page together.

Loading GWAS records…

Loading Manhattan plot…

This Q–Q plot describes the indexed records. For downsampled files, it does not represent the distribution across all tested variants. Data coverage

Loading Q–Q plot…
Loading GWAS summary…

Associated genes

18 genes linked to SNP records with P < 10⁻¹⁰ in the selected scope. Supporting SNP records are counted per feature–gene pair.

Gene ID Alias Description Arabidopsis ortholog Supporting SNP recordsGene interval (1-based)Minimum P
Glyma.02G109400 hypothetical protein NA 1Chr02:10495046–10497626 (-)3.014e-13
Glyma.02G109700 hypothetical protein NA 1Chr02:10518501–10523556 (+)8.645e-12
Glyma.02G109900 hypothetical protein AT2G03150:emb1579:ATP/GTP-binding protein family 1Chr02:10547851–10557930 (+)3.014e-13
Glyma.02G113000 hypothetical protein AT1G69370:CM3:chorismate mutase 3 1Chr02:10939096–10941983 (-)2.91e-14
Glyma.03G021700 hypothetical protein AT2G45490:AUR3:ataurora3 1Chr03:2248429–2251737 (+)4.36e-11
Glyma.03G022100 hypothetical protein AT4G32430:AT4G32430:Pentatricopeptide repeat (PPR) superfamily protein 1Chr03:2301675–2307263 (+)1.682e-11
Glyma.04G098400 hypothetical protein AT1G22490:AT1G22490:basic helix-loop-helix (bHLH) DNA-binding superfamily protein__AT1G72210:AT1G72210:basic helix-loop… 1Chr04:8914410–8916406 (+)1.279e-11
Glyma.12G198700 hypothetical protein AT5G62990:emb1692:Ubiquitin carboxyl-terminal hydrolase family protein 1Chr12:36001658–36004086 (+)8.441e-11
Glyma.12G202200 hypothetical protein AT2G20860:LIP1:lipoic acid synthase 1 1Chr12:36267599–36271584 (+)1.684e-13
Glyma.12G202300 hypothetical protein NA 1Chr12:36275438–36276838 (+)1.684e-13
Glyma.12G202400 hypothetical protein AT4G03415:PP2C52:Protein phosphatase 2C family protein 1Chr12:36289704–36295084 (-)5.739e-11
Glyma.16G003000 hypothetical protein AT1G58025:AT1G58025:DNA-binding bromodomain-containing protein 1Chr16:164584–168767 (+)2.894e-11
Glyma.16G003200 hypothetical protein NA 1Chr16:172940–178668 (-)2.894e-11
Glyma.16G003600 hypothetical protein AT5G49945:AT5G49945: 1Chr16:198072–202486 (-)5.146e-12
Glyma.17G153900 hypothetical protein AT5G46580:AT5G46580:pentatricopeptide (PPR) repeat-containing protein 1Chr17:12919733–12922117 (-)1.955e-11
Glyma.17G154300 hypothetical protein AT5G46610:AT5G46610:aluminum activated malate transporter family protein 1Chr17:12986575–12990804 (-)7.214e-11
Glyma.17G154400 hypothetical protein AT1G32530:AT1G32530:RING/U-box superfamily protein__AT2G35330:AT2G35330:RING/U-box superfamily protein 1Chr17:13022389–13028100 (-)5.519e-11
Glyma.20G019800 hypothetical protein AT1G49350:AT1G49350:pfkB-like carbohydrate kinase family protein 1Chr20:2051817–2057262 (+)3.134e-11