Soybean mGWAS DBExplore The Genetic Basis Of Soybean Metabolism Glycine max
Overview Annotation GWAS Evidence Associated genes

P50831

Metabolite ID
P50831
Deionized mass
523.3469 Da
Average m/z
524.3524
Average RT
27.1890
Adduct
[M+H]+
Association scope
Overlapping genes only
Associated genes
49
GWAS result file
Available
Open in Soybean Metabolome Repository

Candidate annotations

Search compound candidates by deionized mass and tolerance. Follow compound IDs for database records, or use name searches to explore chemistry and soybean literature. About candidate annotations

GWAS Evidence

Dataset: indexed GWAS records.

Settings

SNP counts, plot highlights, gene associations and downloads use P < 10⁻¹⁰. Changing the threshold updates this page together.

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Associated genes

49 genes linked to SNP records with P < 10⁻¹⁰ in the selected scope. Supporting SNP records are counted per feature–gene pair.

Gene ID Alias Description Arabidopsis ortholog Supporting SNP recordsGene interval (1-based)Minimum P
Glyma.08G226000 hypothetical protein AT3G13062:AT3G13062:Polyketide cyclase/dehydrase and lipid transport superfamily protein 3Chr08:18321377–18335864 (-)9.762e-11
Glyma.16G114900 hypothetical protein NA 3Chr16:25456379–25485759 (+)5.83e-11
Glyma.16G189100 hypothetical protein AT1G05190:emb2394:Ribosomal protein L6 family 3Chr16:35170253–35173950 (-)8.794e-15
Glyma.14G093100 hypothetical protein NA 2Chr14:8654730–8655892 (-)1.939e-11
Glyma.14G201600 hypothetical protein NA 2Chr14:46703283–46706500 (+)2.225e-11
Glyma.16G196900 hypothetical protein NA 2Chr16:35841279–35846894 (-)4.586e-11
Glyma.01G117000 hypothetical protein NA 1Chr01:40366281–40370122 (+)5.445e-11
Glyma.01G117200 hypothetical protein NA 1Chr01:40497525–40501709 (-)5.445e-11
Glyma.01G120000 hypothetical protein NA 1Chr01:41270985–41274854 (+)1.559e-11
Glyma.01G123900 hypothetical protein AT3G51770:ETO1:tetratricopeptide repeat (TPR)-containing protein 1Chr01:42831758–42837350 (+)2.391e-11
Glyma.01G124100 hypothetical protein NA 1Chr01:42886229–42892204 (-)8.7e-11
Glyma.05G124700 hypothetical protein NA 1Chr05:31807311–31817648 (+)2.657e-11
Glyma.05G236700 hypothetical protein AT4G33760:AT4G33760:tRNA synthetase class II (D, K and N) family protein 1Chr05:41301540–41310727 (+)5.752e-11
Glyma.06G019800 hypothetical protein NA 1Chr06:1494230–1501925 (+)6.895e-11
Glyma.06G112300 hypothetical protein AT1G44780:AT1G44780:translation initiation factor__AT4G08310:AT4G08310:DNA ligase 1Chr06:9113982–9118848 (-)7.879e-11
Glyma.06G112600 hypothetical protein AT1G77620:AT1G77620:P-loop containing nucleoside triphosphate hydrolases superfamily protein 1Chr06:9134358–9144986 (+)7.879e-11
Glyma.06G112700 hypothetical protein AT1G44760:AT1G44760:Adenine nucleotide alpha hydrolases-like superfamily protein 1Chr06:9156973–9158659 (+)7.879e-11
Glyma.08G226100 hypothetical protein AT3G13060:ECT5:evolutionarily conserved C-terminal region 5 1Chr08:18339384–18347070 (-)9.762e-11
Glyma.08G226400 hypothetical protein AT3G13050:NiaP:Major facilitator superfamily protein 1Chr08:18370226–18374060 (-)9.762e-11
Glyma.09G082000 hypothetical protein NA 1Chr09:9638564–9650178 (+)8.518e-12
Glyma.09G084300 hypothetical protein AT2G34680:AIR9:Outer arm dynein light chain 1 protein 1Chr09:10129602–10197250 (-)7.093e-11
Glyma.10G078700 hypothetical protein NA 1Chr10:8882318–8903950 (+)1.995e-12
Glyma.10G079100 hypothetical protein NA 1Chr10:8960669–8962364 (-)1.995e-12
Glyma.10G079800 hypothetical protein NA 1Chr10:9223520–9228511 (-)1.995e-12
Glyma.10G080000 hypothetical protein AT3G11660:NHL1:NDR1/HIN1-like 1__AT3G52470:AT3G52470:Late embryosis abundant (LEA) hydroxyproline-rich glycoprotein fam… 1Chr10:9258476–9260697 (-)1.995e-12
Glyma.10G081700 hypothetical protein NA 1Chr10:9752508–9758422 (+)3.42e-11
Glyma.12G108600 hypothetical protein NA 1Chr12:9994609–9997302 (-)8.869e-11
Glyma.12G109500 hypothetical protein AT4G03415:PP2C52:Protein phosphatase 2C family protein 1Chr12:10308026–10314332 (-)8.869e-11
Glyma.12G114500 hypothetical protein AT4G22930:PYR4:pyrimidin 4 1Chr12:11396572–11400825 (-)2.683e-12
Glyma.12G114900 hypothetical protein NA 1Chr12:11457987–11462951 (-)2.683e-12
Glyma.14G201700 hypothetical protein NA 1Chr14:46711634–46715644 (-)2.225e-11
Glyma.15G121100 hypothetical protein NA 1Chr15:9567797–9570248 (+)1.45e-12
Glyma.15G121300 hypothetical protein AT5G47760:PGLP2:2-phosphoglycolate phosphatase 2 1Chr15:9584685–9590201 (-)1.912e-12
Glyma.15G121500 hypothetical protein AT1G03370:AT1G03370:C2 calcium/lipid-binding and GRAM domain containing protein 1Chr15:9602794–9615281 (+)1.45e-12
Glyma.15G121800 hypothetical protein NA 1Chr15:9643746–9648073 (+)1.45e-12
Glyma.16G115300 hypothetical protein NA 1Chr16:25584135–25585667 (+)5.83e-11
Glyma.16G115400 hypothetical protein NA 1Chr16:25604547–25606360 (+)5.83e-11
Glyma.16G115500 hypothetical protein NA 1Chr16:25622503–25630816 (+)5.83e-11
Glyma.16G115600 hypothetical protein AT1G13410:AT1G13410:Tetratricopeptide repeat (TPR)-like superfamily protein 1Chr16:25661245–25664376 (-)5.83e-11
Glyma.16G117400 hypothetical protein NA 1Chr16:26234552–26238233 (-)6.817e-12
Glyma.16G118100 hypothetical protein AT2G17570:cPT1:Undecaprenyl pyrophosphate synthetase family protein 1Chr16:26324650–26336836 (+)5.955e-12
Glyma.16G180100 hypothetical protein NA 1Chr16:34070806–34076053 (+)7.905e-12
Glyma.16G189000 hypothetical protein NA 1Chr16:35160485–35167548 (-)6.384e-11
Glyma.16G196200 HSF-32 heat stress transcription factor 32 AT5G62020:HSFB2A:heat shock transcription factor B2A 1Chr16:35760178–35761852 (+)5.582e-11
Glyma.17G215500 KNAT5 NA 1Chr17:36212363–36217688 (-)1.544e-11
Glyma.18G108400 hypothetical protein NA 1Chr18:12370997–12390275 (-)5.694e-11
Glyma.18G201700 hypothetical protein NA 1Chr18:48175554–48180264 (+)1.003e-11
Glyma.19G005200 hypothetical protein AT3G27640:AT3G27640:Transducin/WD40 repeat-like superfamily protein 1Chr19:472201–476152 (-)1.068e-12
Glyma.19G006900 hypothetical protein AT5G14700:AT5G14700:NAD(P)-binding Rossmann-fold superfamily protein 1Chr19:686556–692466 (-)6.33e-11