Soybean mGWAS DBExplore The Genetic Basis Of Soybean Metabolism Glycine max
Overview Annotation GWAS Evidence Associated genes

P50749

Metabolite ID
P50749
Deionized mass
391.2684 Da
Average m/z
392.2763
Average RT
27.1231
Adduct
[M+H]+
Association scope
Overlapping genes only
Associated genes
45
GWAS result file
Available
Open in Soybean Metabolome Repository

Candidate annotations

Search compound candidates by deionized mass and tolerance. Follow compound IDs for database records, or use name searches to explore chemistry and soybean literature. About candidate annotations

GWAS Evidence

Dataset: indexed GWAS records.

Settings

SNP counts, plot highlights, gene associations and downloads use P < 10⁻¹⁰. Changing the threshold updates this page together.

Loading GWAS records…

Loading Manhattan plot…

This Q–Q plot describes the indexed records. For downsampled files, it does not represent the distribution across all tested variants. Data coverage

Loading Q–Q plot…
Loading GWAS summary…

Associated genes

45 genes linked to SNP records with P < 10⁻¹⁰ in the selected scope. Supporting SNP records are counted per feature–gene pair.

Gene ID Alias Description Arabidopsis ortholog Supporting SNP recordsGene interval (1-based)Minimum P
Glyma.03G251100 hypothetical protein AT3G04490:AT3G04490:exportin-4 protein 2Chr03:44673965–44702804 (-)6.214e-11
Glyma.07G243600 hypothetical protein NA 2Chr07:42336266–42345196 (+)1.972e-12
Glyma.08G303400 hypothetical protein NA 2Chr08:42139097–42147365 (+)2.177e-12
Glyma.03G023000 hypothetical protein AT4G00220:JLO:Lateral organ boundaries (LOB) domain family protein 1Chr03:2423540–2428634 (-)4.039e-13
Glyma.03G042500 hypothetical protein NA 1Chr03:5367447–5370281 (+)1.744e-11
Glyma.03G135600 hypothetical protein NA 1Chr03:35109981–35110632 (-)3.103e-12
Glyma.05G182500 hypothetical protein AT5G65210:TGA1:bZIP transcription factor family protein 1Chr05:37029299–37037313 (+)8.224e-11
Glyma.05G236400 hypothetical protein AT1G23210:GH9B6:glycosyl hydrolase 9B6__AT1G70710:GH9B1:glycosyl hydrolase 9B1 1Chr05:41274513–41279615 (-)3.591e-12
Glyma.05G236700 hypothetical protein AT4G33760:AT4G33760:tRNA synthetase class II (D, K and N) family protein 1Chr05:41301540–41310727 (+)7.501e-13
Glyma.07G019900 hypothetical protein AT1G79870:AT1G79870:D-isomer specific 2-hydroxyacid dehydrogenase family protein 1Chr07:1561952–1564494 (+)1.438e-11
Glyma.07G242700 hypothetical protein NA 1Chr07:42245320–42251504 (-)1.972e-12
Glyma.07G243800 hypothetical protein NA 1Chr07:42339489–42341742 (-)1.972e-12
Glyma.07G244300 hypothetical protein AT3G16810:PUM24:pumilio 24 1Chr07:42386941–42393489 (+)1.972e-12
Glyma.07G244500 hypothetical protein AT4G16070:AT4G16070:lipase class 3 family protein 1Chr07:42405215–42407262 (+)1.972e-12
Glyma.07G244700 hypothetical protein NA 1Chr07:42413071–42416331 (-)1.972e-12
Glyma.07G245200 hypothetical protein NA 1Chr07:42448391–42448648 (-)1.972e-12
Glyma.07G245500 hypothetical protein NA 1Chr07:42462950–42472062 (+)1.972e-12
Glyma.07G245600 hypothetical protein NA 1Chr07:42463861–42466282 (-)1.972e-12
Glyma.07G245900 hypothetical protein AT4G15940:AT4G15940:Fumarylacetoacetate (FAA) hydrolase family 1Chr07:42479727–42483842 (-)1.972e-12
Glyma.08G202000 hypothetical protein AT1G52150:ATHB-15:Homeobox-leucine zipper family protein / lipid-binding START domain-containing protein 1Chr08:16375907–16384294 (-)3.935e-12
Glyma.10G263800 hypothetical protein AT1G23010:LPR1:Cupredoxin superfamily protein 1Chr10:48805999–48811533 (-)8.98e-11
Glyma.11G006200 hypothetical protein AT4G14820:AT4G14820:Pentatricopeptide repeat (PPR) superfamily protein 1Chr11:439236–441685 (+)9.232e-11
Glyma.11G015300 hypothetical protein AT3G60500:CER7:3'-5'-exoribonuclease family protein 1Chr11:1048122–1055388 (+)1.199e-11
Glyma.11G049700 hypothetical protein NA 1Chr11:3731308–3734534 (+)2.696e-13
Glyma.11G050300 hypothetical protein AT2G23093:AT2G23093:Major facilitator superfamily protein 1Chr11:3765453–3771565 (+)1.666e-13
Glyma.11G050500 hypothetical protein AT5G67370:CGLD27:DUF1230 family protein (DUF1230) 1Chr11:3778152–3782174 (+)1.666e-13
Glyma.11G050600 hypothetical protein NA 1Chr11:3779988–3786583 (-)1.666e-13
Glyma.11G051600 hypothetical protein NA 1Chr11:3857225–3859564 (-)1.666e-13
Glyma.11G179000 hypothetical protein AT2G27230:LHW:transcription factor-like protein 1Chr11:24412040–24417199 (+)3.947e-12
Glyma.11G182600 hypothetical protein AT5G22400:AT5G22400:Rho GTPase activating protein with PAK-box/P21-Rho-binding domain-containing protein 1Chr11:24998933–25003549 (-)2.944e-12
Glyma.11G182700 hypothetical protein AT1G32250:AT1G32250:Calcium-binding EF-hand family protein 1Chr11:25028353–25031056 (-)1.276e-11
Glyma.12G198700 hypothetical protein AT5G62990:emb1692:Ubiquitin carboxyl-terminal hydrolase family protein 1Chr12:36001658–36004086 (+)2.355e-11
Glyma.12G204000 hypothetical protein AT1G03687:AT1G03687:DTW domain-containing protein 1Chr12:36428558–36432835 (+)6.679e-11
Glyma.12G204400 hypothetical protein AT4G03560:TPC1:two-pore channel 1 1Chr12:36473422–36498915 (+)6.679e-11
Glyma.14G094900 hypothetical protein AT1G60960:IRT3:iron regulated transporter 3 1Chr14:8824846–8827258 (-)7.676e-11
Glyma.15G035600 hypothetical protein AT3G46740:TOC75-III:translocon at the outer envelope membrane of chloroplasts 75-III 1Chr15:2830678–2835534 (+)7.904e-13
Glyma.15G037400 hypothetical protein AT5G59420:ORP3C:OSBP(oxysterol binding protein)-related protein 3C 1Chr15:2950291–2955686 (-)1.089e-11
Glyma.15G037600 hypothetical protein AT2G29050:RBL1:RHOMBOID-like 1 1Chr15:2964304–2967785 (+)7.403e-12
Glyma.15G256300 hypothetical protein NA 1Chr15:48546007–48547401 (-)4.588e-15
Glyma.15G257100 hypothetical protein AT1G56070:LOS1:Ribosomal protein S5/Elongation factor G/III/V family protein 1Chr15:48661607–48665946 (-)5.51e-11
Glyma.16G062500 hypothetical protein NA 1Chr16:6099546–6105267 (-)2.316e-11
Glyma.16G066000 hypothetical protein AT5G40660:AT5G40660:ATP12 protein-like protein 1Chr16:6570689–6574950 (+)8.597e-12
Glyma.16G069300 hypothetical protein AT3G01600:NAC044:NAC domain containing protein 44 1Chr16:6914905–6920531 (+)5.43e-11
Glyma.19G128200 hypothetical protein NA 1Chr19:38739769–38743404 (+)1.304e-11
Glyma.19G218100 hypothetical protein AT1G02390:GPAT2:glycerol-3-phosphate acyltransferase 2 1Chr19:47082133–47085750 (+)3.338e-13