Soybean mGWAS DBExplore The Genetic Basis Of Soybean Metabolism Glycine max
Overview Annotation GWAS Evidence Associated genes

P50710

Metabolite ID
P50710
Deionized mass
688.2698 Da
Average m/z
689.2785
Average RT
27.0922
Adduct
[M+H]+
Association scope
Overlapping genes only
Associated genes
47
GWAS result file
Available
Open in Soybean Metabolome Repository

Candidate annotations

Search compound candidates by deionized mass and tolerance. Follow compound IDs for database records, or use name searches to explore chemistry and soybean literature. About candidate annotations

GWAS Evidence

Dataset: indexed GWAS records.

Settings

SNP counts, plot highlights, gene associations and downloads use P < 10⁻¹⁰. Changing the threshold updates this page together.

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Associated genes

47 genes linked to SNP records with P < 10⁻¹⁰ in the selected scope. Supporting SNP records are counted per feature–gene pair.

Gene ID Alias Description Arabidopsis ortholog Supporting SNP recordsGene interval (1-based)Minimum P
Glyma.16G209300 hypothetical protein NA 4Chr16:36856833–36863994 (-)2.873e-14
Glyma.06G305700 hypothetical protein AT2G05710:ACO3:aconitase 3 3Chr06:49451501–49461369 (-)3.542e-13
Glyma.16G147900 hypothetical protein NA 3Chr16:30864919–30872425 (+)1.219e-11
Glyma.06G130300 hypothetical protein AT5G53080:AT5G53080:Tetratricopeptide repeat (TPR)-like superfamily protein 2Chr06:10709045–10716245 (-)2.62e-16
Glyma.16G145600 hypothetical protein AT1G11310:MLO2:Seven transmembrane MLO family protein__AT2G39200:MLO12:Seven transmembrane MLO family protein__AT1G6156… 2Chr16:30652378–30659548 (+)2.861e-11
Glyma.01G168800 hypothetical protein AT1G24430:AT1G24430:HXXXD-type acyl-transferase family protein 1Chr01:50633986–50636589 (+)1.077e-12
Glyma.01G230800 hypothetical protein AT4G10050:AT4G10050:esterase/lipase/thioesterase family protein 1Chr01:55803995–55808033 (+)3.635e-12
Glyma.01G231400 hypothetical protein AT4G25340:FKBP53:FK506 BINDING PROTEIN 53 1Chr01:55836387–55840615 (+)1.387e-12
Glyma.01G231700 hypothetical protein AT4G10180:DET1:light-mediated development protein 1 / deetiolated1 (DET1) 1Chr01:55856415–55863866 (+)3.205e-11
Glyma.01G231900 hypothetical protein AT1G71500:AT1G71500:Rieske (2Fe-2S) domain-containing protein 1Chr01:55869836–55872417 (+)3.853e-12
Glyma.03G013500 hypothetical protein AT1G01700:ROPGEF2:RHO guanyl-nucleotide exchange factor 2 1Chr03:1370977–1375024 (+)8.161e-11
Glyma.06G129400 hypothetical protein AT5G24300:SS1:Glycogen/starch synthases, ADP-glucose type 1Chr06:10632042–10640023 (+)9.582e-14
Glyma.06G129800 hypothetical protein AT5G53030:AT5G53030:uncharacterized protein 1Chr06:10667029–10669377 (+)6.851e-17
Glyma.06G130100 hypothetical protein AT3G49290:ABIL2:ABL interactor-like protein 2 1Chr06:10695256–10699675 (+)6.851e-17
Glyma.06G130700 hypothetical protein AT5G53060:RCF3:RNA-binding KH domain-containing protein 1Chr06:10742110–10747597 (-)1.051e-13
Glyma.06G305300 hypothetical protein NA 1Chr06:49431590–49435985 (-)3.542e-13
Glyma.06G305600 hypothetical protein NA 1Chr06:49446542–49450635 (-)3.542e-13
Glyma.08G117500 hypothetical protein AT4G18780:IRX1:cellulose synthase family protein 1Chr08:9065033–9071774 (-)8.118e-11
Glyma.08G118400 hypothetical protein AT4G18810:AT4G18810:NAD(P)-binding Rossmann-fold superfamily protein 1Chr08:9147404–9153858 (-)8.118e-11
Glyma.08G119300 hypothetical protein AT1G29330:ERD2:ER lumen protein retaining receptor family protein 1Chr08:9198213–9201688 (-)5.953e-11
Glyma.09G016500 hypothetical protein NA 1Chr09:1274652–1276853 (-)9.289e-11
Glyma.09G082000 hypothetical protein NA 1Chr09:9638564–9650178 (+)7.324e-11
Glyma.09G133800 hypothetical protein NA 1Chr09:33268295–33269240 (+)7.057e-11
Glyma.09G280300 hypothetical protein AT2G38480:AT2G38480:Uncharacterized protein family (UPF0497) 1Chr09:49547489–49550731 (-)9.58e-11
Glyma.10G081700 hypothetical protein NA 1Chr10:9752508–9758422 (+)4.014e-11
Glyma.11G070700 hypothetical protein NA 1Chr11:5282926–5287258 (+)8.113e-11
Glyma.11G125600 hypothetical protein AT2G46200:AT2G46200:U11/U12 small nuclear ribonucleoprotein 1Chr11:9540747–9545520 (-)4.812e-12
Glyma.11G127100 hypothetical protein AT1G06040:STO:B-box zinc finger family protein 1Chr11:9656242–9659517 (+)8.95e-11
Glyma.11G127200 hypothetical protein AT3G59480:AT3G59480:pfkB-like carbohydrate kinase family protein 1Chr11:9660434–9665570 (-)8.95e-11
Glyma.11G127300 hypothetical protein AT2G28480:AT2G28480:RNA-binding CRS1 / YhbY (CRM) domain protein 1Chr11:9667918–9671917 (-)8.95e-11
Glyma.11G239100 hypothetical protein NA 1Chr11:33341784–33344981 (+)3.374e-11
Glyma.13G181100 hypothetical protein AT2G47960:AT2G47960:trafficking protein particle complex subunit-like protein 1Chr13:29426889–29433599 (-)7.317e-13
Glyma.14G066800 hypothetical protein NA 1Chr14:5511222–5513114 (+)4.043e-11
Glyma.15G111000 hypothetical protein AT1G62305:AT1G62305:Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein__AT1G11940:AT1G11940:Cor… 1Chr15:8692505–8697919 (-)6.343e-11
Glyma.15G124000 hypothetical protein NA 1Chr15:9845097–9849312 (-)1.492e-12
Glyma.16G020200 hypothetical protein NA 1Chr16:1828561–1835982 (-)3.047e-12
Glyma.16G051900 hypothetical protein NA 1Chr16:5009359–5009660 (+)2.69e-11
Glyma.16G207900 hypothetical protein AT5G08450:AT5G08450:zinc finger CCCH domain protein 1Chr16:36754888–36763450 (+)1.009e-12
Glyma.16G208500 EIF6 AT3G55620:eIF6A:Translation initiation factor IF6 1Chr16:36806718–36809299 (+)6.352e-11
Glyma.16G209400 hypothetical protein AT1G17840:ABCG11:white-brown complex-like protein 1Chr16:36871978–36878151 (-)1.364e-12
Glyma.16G210300 hypothetical protein AT1G73340:AT1G73340:Cytochrome P450 superfamily protein 1Chr16:36943073–36948828 (+)1.831e-11
Glyma.16G210400 hypothetical protein AT1G73350:AT1G73350:ankyrin repeat protein 1Chr16:36949685–36953467 (+)1.831e-11
Glyma.18G202600 FAD7-1 omega-3 fatty acid desaturase NA 1Chr18:48365045–48368299 (-)8.353e-11
Glyma.19G012100 hypothetical protein AT3G28150:TBL22:TRICHOME BIREFRINGENCE-LIKE 22 1Chr19:1155711–1161298 (-)1.389e-15
Glyma.19G012300 hypothetical protein NA 1Chr19:1165111–1173031 (-)1.389e-15
Glyma.19G128200 hypothetical protein NA 1Chr19:38739769–38743404 (+)3.625e-14
Glyma.20G109600 hypothetical protein AT3G14290:PAE2:20S proteasome alpha subunit E2__AT1G53850:PAE1:20S proteasome alpha subunit E1 1Chr20:35200934–35205885 (-)5.965e-11