Soybean mGWAS DBExplore The Genetic Basis Of Soybean Metabolism Glycine max
Overview Annotation GWAS Evidence Associated genes

P50691

Metabolite ID
P50691
Deionized mass
513.3263 Da
Average m/z
514.3342
Average RT
27.0669
Adduct
[M+H]+
Association scope
Overlapping genes only
Associated genes
64
GWAS result file
Available
Open in Soybean Metabolome Repository

Candidate annotations

Search compound candidates by deionized mass and tolerance. Follow compound IDs for database records, or use name searches to explore chemistry and soybean literature. About candidate annotations

GWAS Evidence

Dataset: indexed GWAS records.

Settings

SNP counts, plot highlights, gene associations and downloads use P < 10⁻¹⁰. Changing the threshold updates this page together.

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Associated genes

64 genes linked to SNP records with P < 10⁻¹⁰ in the selected scope. Supporting SNP records are counted per feature–gene pair.

Gene ID Alias Description Arabidopsis ortholog Supporting SNP recordsGene interval (1-based)Minimum P
Glyma.01G045600 hypothetical protein NA 3Chr01:5242432–5245038 (-)6.775e-12
Glyma.06G305700 hypothetical protein AT2G05710:ACO3:aconitase 3 3Chr06:49451501–49461369 (-)5.76e-12
Glyma.14G149300 hypothetical protein NA 3Chr14:32235308–32258014 (+)1.013e-11
Glyma.16G210200 hypothetical protein NA 3Chr16:36933402–36938940 (+)1.274e-11
Glyma.14G093100 hypothetical protein NA 2Chr14:8654730–8655892 (-)6.205e-15
Glyma.14G135400 hypothetical protein AT2G24570:WRKY17:WRKY DNA-binding protein 17 2Chr14:23729201–23732285 (-)4.439e-12
Glyma.01G037200 hypothetical protein NA 1Chr01:3946315–3948100 (-)1.946e-11
Glyma.01G045400 hypothetical protein NA 1Chr01:5140834–5144197 (-)3.168e-11
Glyma.01G045700 hypothetical protein AT1G69680:AT1G69680:ran guanine nucleotide release factor, putative (Mog1/PsbP/DUF1795-like photosystem II reaction cen… 1Chr01:5265956–5271379 (-)6.775e-12
Glyma.01G119600 SLE3 AT2G40170:GEA6:Stress induced protein 1Chr01:41172520–41174209 (-)6.072e-11
Glyma.01G120000 hypothetical protein NA 1Chr01:41270985–41274854 (+)2.745e-14
Glyma.01G121400 hypothetical protein AT5G01400:ESP4:HEAT repeat-containing protein 1Chr01:41808055–41828625 (-)8.152e-12
Glyma.02G287700 hypothetical protein AT3G58780:SHP1:K-box region and MADS-box transcription factor family protein__AT2G42830:SHP2:K-box region and MADS-box … 1Chr02:46797935–46805223 (-)5.312e-11
Glyma.02G294000 hypothetical protein NA 1Chr02:47237993–47240495 (+)1.765e-11
Glyma.02G294500 hypothetical protein AT5G50850:MAB1:Transketolase family protein 1Chr02:47272683–47277831 (-)4.446e-12
Glyma.02G295900 hypothetical protein NA 1Chr02:47375932–47378006 (+)2.84e-14
Glyma.02G296200 hypothetical protein AT5G55390:EDM2:ENHANCED DOWNY MILDEW 2 1Chr02:47383044–47395946 (-)2.84e-14
Glyma.02G296300 hypothetical protein AT5G55400:AT5G55400:Actin binding Calponin homology (CH) domain-containing protein 1Chr02:47399263–47406220 (-)1.397e-13
Glyma.03G023000 hypothetical protein AT4G00220:JLO:Lateral organ boundaries (LOB) domain family protein 1Chr03:2423540–2428634 (-)1.143e-11
Glyma.05G236400 hypothetical protein AT1G23210:GH9B6:glycosyl hydrolase 9B6__AT1G70710:GH9B1:glycosyl hydrolase 9B1 1Chr05:41274513–41279615 (-)2.167e-11
Glyma.05G236700 hypothetical protein AT4G33760:AT4G33760:tRNA synthetase class II (D, K and N) family protein 1Chr05:41301540–41310727 (+)5.501e-13
Glyma.06G019800 hypothetical protein NA 1Chr06:1494230–1501925 (+)6.54e-11
Glyma.06G078400 hypothetical protein AT4G31290:AT4G31290:ChaC-like family protein 1Chr06:6068728–6071360 (+)9.277e-13
Glyma.06G079400 hypothetical protein NA 1Chr06:6105463–6107101 (+)2.621e-11
Glyma.06G203300 hypothetical protein AT1G18640:PSP:3-phosphoserine phosphatase 1Chr06:19025714–19030363 (+)3.111e-11
Glyma.06G305300 hypothetical protein NA 1Chr06:49431590–49435985 (-)5.76e-12
Glyma.06G305600 hypothetical protein NA 1Chr06:49446542–49450635 (-)5.76e-12
Glyma.07G091400 COL21 CONSTANS-like zinc finger protein AT1G25440:BBX15:B-box type zinc finger protein with CCT domain-containing protein 1Chr07:8539101–8547001 (+)3.973e-12
Glyma.08G296900 hypothetical protein NA 1Chr08:41297891–41301852 (+)3.054e-12
Glyma.09G082000 hypothetical protein NA 1Chr09:9638564–9650178 (+)3.633e-11
Glyma.09G233700 hypothetical protein AT1G33430:AT1G33430:Galactosyltransferase family protein 1Chr09:45632775–45635630 (-)4.883e-11
Glyma.11G049700 hypothetical protein NA 1Chr11:3731308–3734534 (+)1.244e-11
Glyma.11G064300 hypothetical protein AT4G36780:BEH2:BES1/BZR1 homolog 2 1Chr11:4849799–4851673 (+)2.887e-15
Glyma.12G202200 hypothetical protein AT2G20860:LIP1:lipoic acid synthase 1 1Chr12:36267599–36271584 (+)3.463e-11
Glyma.12G202300 hypothetical protein NA 1Chr12:36275438–36276838 (+)3.463e-11
Glyma.13G135500 hypothetical protein AT5G02780:GSTL1:glutathione transferase lambda 1 1Chr13:24798567–24801567 (+)2.645e-11
Glyma.13G135700 hypothetical protein NA 1Chr13:24812720–24818735 (+)2.645e-11
Glyma.13G135800 hypothetical protein AT5G02800:CDL1:Protein kinase superfamily protein 1Chr13:24820151–24823999 (-)2.645e-11
Glyma.13G180300 hypothetical protein NA 1Chr13:29378090–29379784 (-)1.347e-11
Glyma.13G181100 hypothetical protein AT2G47960:AT2G47960:trafficking protein particle complex subunit-like protein 1Chr13:29426889–29433599 (-)2.803e-15
Glyma.13G183400 hypothetical protein NA 1Chr13:29666942–29670201 (+)3.029e-11
Glyma.14G094900 hypothetical protein AT1G60960:IRT3:iron regulated transporter 3 1Chr14:8824846–8827258 (-)4.148e-15
Glyma.14G135100 hypothetical protein AT4G31540:EXO70G1:exocyst subunit exo70 family protein G1 1Chr14:23623422–23626499 (-)6.366e-12
Glyma.14G148800 hypothetical protein AT1G44760:AT1G44760:Adenine nucleotide alpha hydrolases-like superfamily protein 1Chr14:32154755–32157298 (+)1.013e-11
Glyma.14G149000 hypothetical protein NA 1Chr14:32164321–32167686 (+)1.219e-11
Glyma.14G201600 hypothetical protein NA 1Chr14:46703283–46706500 (+)1.957e-12
Glyma.14G201700 hypothetical protein NA 1Chr14:46711634–46715644 (-)1.957e-12
Glyma.15G124000 hypothetical protein NA 1Chr15:9845097–9849312 (-)1.604e-14
Glyma.16G024600 hypothetical protein AT1G01320:AT1G01320:Tetratricopeptide repeat (TPR)-like superfamily protein 1Chr16:2374161–2391216 (-)5.353e-11
Glyma.16G025300 hypothetical protein NA 1Chr16:2438122–2440528 (-)1.471e-14
Glyma.16G025400 hypothetical protein AT2G46430:CNGC3:cyclic nucleotide gated channel 3 1Chr16:2443212–2450834 (-)1.471e-14
Glyma.16G031600 hypothetical protein NA 1Chr16:2964569–2985013 (+)8.849e-11
Glyma.16G209300 hypothetical protein NA 1Chr16:36856833–36863994 (-)4.997e-11
Glyma.16G209900 hypothetical protein NA 1Chr16:36919141–36924601 (+)1.274e-11
Glyma.17G064000 hypothetical protein AT2G18840:AT2G18840:Integral membrane Yip1 family protein__AT4G30260:AT4G30260:Integral membrane Yip1 family protein 1Chr17:4924830–4930155 (-)3.34e-11
Glyma.17G064200 hypothetical protein AT5G57500:AT5G57500:Galactosyltransferase family protein 1Chr17:4943412–4944357 (-)3.34e-11
Glyma.18G021700 hypothetical protein NA 1Chr18:1590986–1596262 (-)2.921e-12
Glyma.19G012100 hypothetical protein AT3G28150:TBL22:TRICHOME BIREFRINGENCE-LIKE 22 1Chr19:1155711–1161298 (-)2.668e-13
Glyma.19G012300 hypothetical protein NA 1Chr19:1165111–1173031 (-)2.668e-13
Glyma.19G102000 ICE2 AT3G26744:ICE1:basic helix-loop-helix (bHLH) DNA-binding superfamily protein 1Chr19:34998146–35001862 (+)1.121e-11
Glyma.19G102200 hypothetical protein AT2G31410:AT2G31410:coiled-coil protein 1Chr19:35024582–35025690 (+)1.121e-11
Glyma.19G218100 hypothetical protein AT1G02390:GPAT2:glycerol-3-phosphate acyltransferase 2 1Chr19:47082133–47085750 (+)5.262e-11
Glyma.20G026300 hypothetical protein AT1G26560:BGLU40:beta glucosidase 40 1Chr20:2894580–2905241 (+)5.103e-11
Glyma.20G105500 hypothetical protein AT4G38540:AT4G38540:FAD/NAD(P)-binding oxidoreductase family protein__AT5G05320:AT5G05320:FAD/NAD(P)-binding oxidoreduc… 1Chr20:34813357–34815998 (-)1.156e-11