Soybean mGWAS DBExplore The Genetic Basis Of Soybean Metabolism Glycine max
Overview Annotation GWAS Evidence Associated genes

P50645

Metabolite ID
P50645
Deionized mass
701.4363 Da
Average m/z
702.4404
Average RT
27.0294
Adduct
[M+H]+
Association scope
Overlapping genes only
Associated genes
44
GWAS result file
Available
Open in Soybean Metabolome Repository

Candidate annotations

Search compound candidates by deionized mass and tolerance. Follow compound IDs for database records, or use name searches to explore chemistry and soybean literature. About candidate annotations

GWAS Evidence

Dataset: indexed GWAS records.

Settings

SNP counts, plot highlights, gene associations and downloads use P < 10⁻¹⁰. Changing the threshold updates this page together.

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Associated genes

44 genes linked to SNP records with P < 10⁻¹⁰ in the selected scope. Supporting SNP records are counted per feature–gene pair.

Gene ID Alias Description Arabidopsis ortholog Supporting SNP recordsGene interval (1-based)Minimum P
Glyma.09G274700 hypothetical protein NA 2Chr09:49057465–49065986 (-)8.701e-11
Glyma.09G275800 hypothetical protein NA 2Chr09:49116424–49122191 (-)8.701e-11
Glyma.09G276100 hypothetical protein AT2G38510:AT2G38510:MATE efflux family protein 2Chr09:49139110–49143810 (-)8.701e-11
Glyma.14G093100 hypothetical protein NA 2Chr14:8654730–8655892 (-)3.573e-12
Glyma.16G031600 hypothetical protein NA 2Chr16:2964569–2985013 (+)6.74e-13
Glyma.19G011800 hypothetical protein AT3G01420:DOX1:Peroxidase superfamily protein 2Chr19:1134716–1143232 (+)1.482e-11
Glyma.01G037200 hypothetical protein NA 1Chr01:3946315–3948100 (-)3.578e-11
Glyma.02G294000 hypothetical protein NA 1Chr02:47237993–47240495 (+)3.49e-11
Glyma.02G295900 hypothetical protein NA 1Chr02:47375932–47378006 (+)4.67e-12
Glyma.02G296200 hypothetical protein AT5G55390:EDM2:ENHANCED DOWNY MILDEW 2 1Chr02:47383044–47395946 (-)4.67e-12
Glyma.02G296300 hypothetical protein AT5G55400:AT5G55400:Actin binding Calponin homology (CH) domain-containing protein 1Chr02:47399263–47406220 (-)9.158e-11
Glyma.05G224700 hypothetical protein NA 1Chr05:40351005–40361888 (+)1.44e-13
Glyma.05G226000 hypothetical protein AT5G19730:AT5G19730:Pectin lyase-like superfamily protein 1Chr05:40458098–40461736 (+)8.018e-13
Glyma.06G078400 hypothetical protein AT4G31290:AT4G31290:ChaC-like family protein 1Chr06:6068728–6071360 (+)8.537e-11
Glyma.06G079400 hypothetical protein NA 1Chr06:6105463–6107101 (+)1.372e-11
Glyma.06G126500 hypothetical protein AT5G04070:AT5G04070:NAD(P)-binding Rossmann-fold superfamily protein 1Chr06:10367536–10373426 (-)8.991e-12
Glyma.07G069400 hypothetical protein AT2G46020:BRM:transcription regulatory protein SNF2 1Chr07:6270176–6283087 (-)9.094e-11
Glyma.07G091400 COL21 CONSTANS-like zinc finger protein AT1G25440:BBX15:B-box type zinc finger protein with CCT domain-containing protein 1Chr07:8539101–8547001 (+)4.211e-13
Glyma.08G296900 hypothetical protein NA 1Chr08:41297891–41301852 (+)1.936e-13
Glyma.09G082000 hypothetical protein NA 1Chr09:9638564–9650178 (+)2.408e-11
Glyma.09G268900 hypothetical protein NA 1Chr09:48638803–48644136 (+)7.014e-11
Glyma.09G270200 hypothetical protein AT5G01020:AT5G01020:Protein kinase superfamily protein 1Chr09:48725417–48728520 (-)9.557e-12
Glyma.09G270400 hypothetical protein NA 1Chr09:48735991–48740879 (+)8.054e-11
Glyma.09G274900 hypothetical protein AT5G02280:AT5G02280:SNARE-like superfamily protein 1Chr09:49069946–49073277 (-)8.701e-11
Glyma.09G275100 hypothetical protein AT3G08760:ATSIK:Protein kinase superfamily protein 1Chr09:49079101–49084269 (-)8.701e-11
Glyma.09G275300 hypothetical protein NA 1Chr09:49094668–49096996 (-)8.701e-11
Glyma.09G275900 hypothetical protein AT5G01850:AT5G01850:Protein kinase superfamily protein 1Chr09:49128687–49133154 (-)8.701e-11
Glyma.09G276000 hypothetical protein NA 1Chr09:49131662–49132187 (+)8.701e-11
Glyma.09G282900 hypothetical protein AT2G29090:CYP707A2:cytochrome P450, family 707, subfamily A, polypeptide 2 1Chr09:49863377–49871270 (+)8.281e-11
Glyma.11G064300 hypothetical protein AT4G36780:BEH2:BES1/BZR1 homolog 2 1Chr11:4849799–4851673 (+)7.206e-11
Glyma.13G181100 hypothetical protein AT2G47960:AT2G47960:trafficking protein particle complex subunit-like protein 1Chr13:29426889–29433599 (-)2.897e-13
Glyma.14G094900 hypothetical protein AT1G60960:IRT3:iron regulated transporter 3 1Chr14:8824846–8827258 (-)1.412e-13
Glyma.14G135100 hypothetical protein AT4G31540:EXO70G1:exocyst subunit exo70 family protein G1 1Chr14:23623422–23626499 (-)3.28e-11
Glyma.15G035600 hypothetical protein AT3G46740:TOC75-III:translocon at the outer envelope membrane of chloroplasts 75-III 1Chr15:2830678–2835534 (+)2.882e-11
Glyma.15G124000 hypothetical protein NA 1Chr15:9845097–9849312 (-)1.876e-12
Glyma.16G025300 hypothetical protein NA 1Chr16:2438122–2440528 (-)2.839e-12
Glyma.16G025400 hypothetical protein AT2G46430:CNGC3:cyclic nucleotide gated channel 3 1Chr16:2443212–2450834 (-)2.839e-12
Glyma.16G032000 hypothetical protein AT4G01270:AT4G01270:RING/U-box superfamily protein 1Chr16:3031286–3036010 (+)5.871e-11
Glyma.16G041700 hypothetical protein AT1G64770:PnsB2:NDH-dependent cyclic electron flow 1 1Chr16:3909907–3912569 (+)2.673e-11
Glyma.16G041800 hypothetical protein NA 1Chr16:3914214–3917387 (-)5.597e-11
Glyma.16G042100 hypothetical protein NA 1Chr16:3931670–3933390 (-)1.056e-12
Glyma.16G042200 hypothetical protein AT2G23840:AT2G23840:HNH endonuclease 1Chr16:3933842–3940818 (+)1.056e-12
Glyma.16G042600 hypothetical protein AT5G18230:AT5G18230:transcription regulator NOT2/NOT3/NOT5 family protein 1Chr16:3964264–3976083 (-)2.17e-12
Glyma.16G042700 hypothetical protein AT1G08570:ACHT4:atypical CYS HIS rich thioredoxin 4 1Chr16:3982381–3984873 (-)1.412e-13