Soybean mGWAS DBExplore The Genetic Basis Of Soybean Metabolism Glycine max
Overview Annotation GWAS Evidence Associated genes

P50641

Metabolite ID
P50641
Deionized mass
716.3946 Da
Average m/z
717.4055
Average RT
27.0245
Adduct
[M+H]+
Association scope
Overlapping genes only
Associated genes
52
GWAS result file
Available
Open in Soybean Metabolome Repository

Candidate annotations

Search compound candidates by deionized mass and tolerance. Follow compound IDs for database records, or use name searches to explore chemistry and soybean literature. About candidate annotations

GWAS Evidence

Dataset: indexed GWAS records.

Settings

SNP counts, plot highlights, gene associations and downloads use P < 10⁻¹⁰. Changing the threshold updates this page together.

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Associated genes

52 genes linked to SNP records with P < 10⁻¹⁰ in the selected scope. Supporting SNP records are counted per feature–gene pair.

Gene ID Alias Description Arabidopsis ortholog Supporting SNP recordsGene interval (1-based)Minimum P
Glyma.04G096100 hypothetical protein AT1G58230:AT1G58230:binding protein 4Chr04:8566631–8625328 (+)2.797e-11
Glyma.16G114900 hypothetical protein NA 3Chr16:25456379–25485759 (+)4.354e-11
Glyma.16G118100 hypothetical protein AT2G17570:cPT1:Undecaprenyl pyrophosphate synthetase family protein 3Chr16:26324650–26336836 (+)3.155e-13
Glyma.16G118400 hypothetical protein AT2G17190:AT2G17190:ubiquitin family protein 3Chr16:26356863–26371741 (-)8.567e-12
Glyma.16G196900 hypothetical protein NA 3Chr16:35841279–35846894 (-)2.839e-12
Glyma.08G123500 hypothetical protein NA 2Chr08:9494946–9505931 (-)8.833e-11
Glyma.13G135700 hypothetical protein NA 2Chr13:24812720–24818735 (+)5.72e-12
Glyma.13G135800 hypothetical protein AT5G02800:CDL1:Protein kinase superfamily protein 2Chr13:24820151–24823999 (-)5.72e-12
Glyma.16G196800 hypothetical protein AT5G07250:RBL3:RHOMBOID-like protein 3 2Chr16:35831912–35835153 (+)5.258e-11
Glyma.18G196200 hypothetical protein AT3G09100:AT3G09100:mRNA capping enzyme family protein 2Chr18:47102746–47129707 (+)7.748e-12
Glyma.03G019600 hypothetical protein AT2G45640:SAP18:SIN3 associated polypeptide P18 1Chr03:2007617–2009871 (+)8.966e-11
Glyma.03G177700 hypothetical protein NA 1Chr03:39046772–39051158 (+)4.171e-12
Glyma.04G094300 hypothetical protein NA 1Chr04:8395141–8401517 (-)1.896e-11
Glyma.04G096200 hypothetical protein AT4G24470:ZIM:GATA-type zinc finger protein with TIFY domain-containing protein 1Chr04:8627546–8632713 (+)2.797e-11
Glyma.06G084800 hypothetical protein NA 1Chr06:6515571–6517480 (-)9.881e-11
Glyma.06G085000 hypothetical protein NA 1Chr06:6524339–6529016 (-)9.881e-11
Glyma.06G085100 hypothetical protein NA 1Chr06:6531956–6537295 (-)9.881e-11
Glyma.06G085200 hypothetical protein NA 1Chr06:6540849–6545557 (+)1.719e-11
Glyma.06G112300 hypothetical protein AT1G44780:AT1G44780:translation initiation factor__AT4G08310:AT4G08310:DNA ligase 1Chr06:9113982–9118848 (-)1.569e-12
Glyma.06G112600 hypothetical protein AT1G77620:AT1G77620:P-loop containing nucleoside triphosphate hydrolases superfamily protein 1Chr06:9134358–9144986 (+)1.569e-12
Glyma.06G112700 hypothetical protein AT1G44760:AT1G44760:Adenine nucleotide alpha hydrolases-like superfamily protein 1Chr06:9156973–9158659 (+)1.568e-12
Glyma.07G015700 hypothetical protein AT1G79750:NADP-ME4:NADP-malic enzyme 4 1Chr07:1244977–1251198 (-)1.044e-11
Glyma.08G122200 hypothetical protein NA 1Chr08:9416766–9429995 (-)8.833e-11
Glyma.08G122300 hypothetical protein AT1G29390:COR314-TM2:cold regulated 314 thylakoid membrane 2 1Chr08:9435391–9437279 (+)8.833e-11
Glyma.08G122500 hypothetical protein NA 1Chr08:9441329–9445315 (-)8.833e-11
Glyma.08G122700 hypothetical protein AT1G29350:AT1G29350:RNA polymerase II degradation factor-like protein (DUF1296) 1Chr08:9452604–9458932 (+)8.833e-11
Glyma.12G108600 hypothetical protein NA 1Chr12:9994609–9997302 (-)4.98e-11
Glyma.12G109500 hypothetical protein AT4G03415:PP2C52:Protein phosphatase 2C family protein 1Chr12:10308026–10314332 (-)4.98e-11
Glyma.12G204000 hypothetical protein AT1G03687:AT1G03687:DTW domain-containing protein 1Chr12:36428558–36432835 (+)2.539e-11
Glyma.12G204400 hypothetical protein AT4G03560:TPC1:two-pore channel 1 1Chr12:36473422–36498915 (+)2.539e-11
Glyma.13G135300 hypothetical protein NA 1Chr13:24770681–24773826 (+)6.524e-11
Glyma.13G135400 hypothetical protein AT5G12130:PDE149:integral membrane TerC family protein 1Chr13:24786242–24791938 (+)6.524e-11
Glyma.13G135500 hypothetical protein AT5G02780:GSTL1:glutathione transferase lambda 1 1Chr13:24798567–24801567 (+)5.72e-12
Glyma.14G201600 hypothetical protein NA 1Chr14:46703283–46706500 (+)2.126e-11
Glyma.14G201700 hypothetical protein NA 1Chr14:46711634–46715644 (-)2.126e-11
Glyma.16G115300 hypothetical protein NA 1Chr16:25584135–25585667 (+)4.354e-11
Glyma.16G115400 hypothetical protein NA 1Chr16:25604547–25606360 (+)4.354e-11
Glyma.16G115500 hypothetical protein NA 1Chr16:25622503–25630816 (+)4.354e-11
Glyma.16G115600 hypothetical protein AT1G13410:AT1G13410:Tetratricopeptide repeat (TPR)-like superfamily protein 1Chr16:25661245–25664376 (-)4.354e-11
Glyma.16G116200 hypothetical protein AT4G35560:DAW1:Transducin/WD40 repeat-like superfamily protein 1Chr16:25892277–25904773 (+)1.512e-11
Glyma.16G116500 hypothetical protein AT4G16444:AT4G16444:tail-anchored protein insertion receptor WRB-like protein 1Chr16:26057276–26069534 (+)8.805e-12
Glyma.16G117400 hypothetical protein NA 1Chr16:26234552–26238233 (-)1.629e-13
Glyma.16G118200 hypothetical protein NA 1Chr16:26337169–26338323 (+)8.567e-12
Glyma.16G118600 hypothetical protein NA 1Chr16:26442194–26445922 (+)8.567e-12
Glyma.16G119300 hypothetical protein NA 1Chr16:26643902–26644416 (+)8.015e-12
Glyma.16G119400 hypothetical protein NA 1Chr16:26684278–26687087 (+)2.161e-13
Glyma.16G209300 hypothetical protein NA 1Chr16:36856833–36863994 (-)6.958e-11
Glyma.17G212300 hypothetical protein AT5G25310:AT5G25310:Exostosin family protein 1Chr17:35122156–35129564 (-)3.927e-11
Glyma.17G214600 hypothetical protein NA 1Chr17:36049053–36054871 (-)6.465e-12
Glyma.17G215500 KNAT5 NA 1Chr17:36212363–36217688 (-)9.162e-12
Glyma.18G266100 hypothetical protein NA 1Chr18:55052591–55056489 (-)5.581e-11
Glyma.18G266500 hypothetical protein NA 1Chr18:55088284–55091427 (-)2.305e-11