Soybean mGWAS DBExplore The Genetic Basis Of Soybean Metabolism Glycine max
Overview Annotation GWAS Evidence Associated genes

P50621

Metabolite ID
P50621
Deionized mass
353.2523 Da
Average m/z
354.2624
Average RT
27.0138
Adduct
[M+H]+
Association scope
Overlapping genes only
Associated genes
48
GWAS result file
Available
Open in Soybean Metabolome Repository

Candidate annotations

Search compound candidates by deionized mass and tolerance. Follow compound IDs for database records, or use name searches to explore chemistry and soybean literature. About candidate annotations

GWAS Evidence

Dataset: indexed GWAS records.

Settings

SNP counts, plot highlights, gene associations and downloads use P < 10⁻¹⁰. Changing the threshold updates this page together.

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Associated genes

48 genes linked to SNP records with P < 10⁻¹⁰ in the selected scope. Supporting SNP records are counted per feature–gene pair.

Gene ID Alias Description Arabidopsis ortholog Supporting SNP recordsGene interval (1-based)Minimum P
Glyma.16G161500 hypothetical protein NA 4Chr16:32076715–32092322 (-)2.542e-12
Glyma.13G134400 hypothetical protein AT2G37370:AT2G37370:centrosomal protein of 135 kDa-like protein 3Chr13:24677399–24693129 (-)8.584e-13
Glyma.16G196900 hypothetical protein NA 3Chr16:35841279–35846894 (-)1.513e-11
Glyma.07G021800 hypothetical protein AT1G80920:J8:Chaperone DnaJ-domain superfamily protein 2Chr07:1697119–1698666 (+)7.112e-12
Glyma.12G203700 hypothetical protein AT4G28260:AT4G28260:acyl-UDP-N-acetylglucosamine O-acyltransferase 2Chr12:36406747–36413696 (+)2.185e-11
Glyma.13G135700 hypothetical protein NA 2Chr13:24812720–24818735 (+)2.341e-13
Glyma.13G135800 hypothetical protein AT5G02800:CDL1:Protein kinase superfamily protein 2Chr13:24820151–24823999 (-)2.341e-13
Glyma.14G201600 hypothetical protein NA 2Chr14:46703283–46706500 (+)4.63e-12
Glyma.03G023000 hypothetical protein AT4G00220:JLO:Lateral organ boundaries (LOB) domain family protein 1Chr03:2423540–2428634 (-)7.178e-12
Glyma.03G136000 hypothetical protein NA 1Chr03:35138670–35188160 (-)7.684e-11
Glyma.06G125200 hypothetical protein AT4G27940:MTM1:manganese tracking factor for mitochondrial SOD2 1Chr06:10209787–10215982 (+)9.393e-12
Glyma.06G125300 hypothetical protein AT5G24105:AGP41:arabinogalactan protein 41 1Chr06:10216506–10218901 (-)9.393e-12
Glyma.06G290400 hypothetical protein AT1G03770:RING1B:RING 1B 1Chr06:47927556–47934410 (-)2.543e-11
Glyma.06G290600 hypothetical protein AT4G28390:AAC3:ADP/ATP carrier 3 1Chr06:47946032–47949236 (+)2.543e-11
Glyma.06G290800 hypothetical protein AT2G20650:AT2G20650:RING/U-box superfamily protein__AT4G28370:AT4G28370:RING/U-box superfamily protein 1Chr06:47954710–47964808 (-)2.543e-11
Glyma.06G291300 hypothetical protein NA 1Chr06:48016841–48019943 (+)2.449e-12
Glyma.06G292900 hypothetical protein AT4G03540:AT4G03540:Uncharacterized protein family (UPF0497) 1Chr06:48170133–48173010 (-)1.292e-11
Glyma.07G068400 hypothetical protein AT1G29320:AT1G29320:Transducin/WD40 repeat-like superfamily protein 1Chr07:6173172–6180430 (-)9.832e-11
Glyma.07G068600 hypothetical protein NA 1Chr07:6192764–6197166 (+)9.832e-11
Glyma.07G068700 hypothetical protein AT2G46060:AT2G46060:transmembrane protein-like protein 1Chr07:6200187–6208590 (+)4.896e-11
Glyma.07G068800 hypothetical protein NA 1Chr07:6211775–6221107 (-)4.896e-11
Glyma.07G069100 hypothetical protein NA 1Chr07:6246145–6250192 (+)9.832e-11
Glyma.07G087700 hypothetical protein AT3G24495:MSH7:MUTS homolog 7 1Chr07:8111751–8121053 (+)4.415e-12
Glyma.11G064300 hypothetical protein AT4G36780:BEH2:BES1/BZR1 homolog 2 1Chr11:4849799–4851673 (+)9.845e-11
Glyma.12G202200 hypothetical protein AT2G20860:LIP1:lipoic acid synthase 1 1Chr12:36267599–36271584 (+)1.875e-12
Glyma.12G202300 hypothetical protein NA 1Chr12:36275438–36276838 (+)1.875e-12
Glyma.12G202400 hypothetical protein AT4G03415:PP2C52:Protein phosphatase 2C family protein 1Chr12:36289704–36295084 (-)3.659e-11
Glyma.12G203600 EXPB8 AT2G20750:EXPB1:expansin B1 1Chr12:36390283–36394245 (-)7.65e-11
Glyma.13G134300 hypothetical protein NA 1Chr13:24664171–24665742 (-)8.584e-13
Glyma.13G134500 hypothetical protein AT3G09560:PAH1:Lipin family protein 1Chr13:24696109–24705068 (-)3.679e-11
Glyma.13G135300 hypothetical protein NA 1Chr13:24770681–24773826 (+)1.188e-11
Glyma.13G135400 hypothetical protein AT5G12130:PDE149:integral membrane TerC family protein 1Chr13:24786242–24791938 (+)1.188e-11
Glyma.13G135500 hypothetical protein AT5G02780:GSTL1:glutathione transferase lambda 1 1Chr13:24798567–24801567 (+)2.341e-13
Glyma.14G094900 hypothetical protein AT1G60960:IRT3:iron regulated transporter 3 1Chr14:8824846–8827258 (-)9.347e-11
Glyma.14G197700 hypothetical protein AT5G58470:TAF15b:TBP-associated factor 15B 1Chr14:46291986–46298337 (+)8.874e-15
Glyma.14G198000 hypothetical protein NA 1Chr14:46334117–46336863 (+)8.874e-15
Glyma.14G198100 hypothetical protein NA 1Chr14:46337677–46340654 (+)7.354e-11
Glyma.14G201700 hypothetical protein NA 1Chr14:46711634–46715644 (-)4.63e-12
Glyma.14G201800 hypothetical protein AT5G58390:AT5G58390:Peroxidase superfamily protein 1Chr14:46728613–46733836 (+)1.011e-11
Glyma.15G172900 hypothetical protein AT5G57070:AT5G57070:hydroxyproline-rich glycoprotein family protein 1Chr15:15847563–15849835 (+)4.027e-11
Glyma.16G139500 hypothetical protein AT5G66550:AT5G66550:Maf-like protein 1Chr16:29686243–29690410 (-)8.157e-13
Glyma.16G157200 hypothetical protein AT1G71850:AT1G71850:Ubiquitin carboxyl-terminal hydrolase family protein 1Chr16:31774664–31777363 (+)1.467e-11
Glyma.16G160900 hypothetical protein NA 1Chr16:32013447–32016235 (+)3.018e-11
Glyma.16G161000 hypothetical protein NA 1Chr16:32027849–32031609 (-)6.687e-11
Glyma.17G064000 hypothetical protein AT2G18840:AT2G18840:Integral membrane Yip1 family protein__AT4G30260:AT4G30260:Integral membrane Yip1 family protein 1Chr17:4924830–4930155 (-)1.354e-11
Glyma.17G064200 hypothetical protein AT5G57500:AT5G57500:Galactosyltransferase family protein 1Chr17:4943412–4944357 (-)1.354e-11
Glyma.18G236700 hypothetical protein AT3G61490:AT3G61490:Pectin lyase-like superfamily protein 1Chr18:52558809–52562720 (+)4.629e-11
Glyma.18G251900 hypothetical protein AT3G60320:AT3G60320:bZIP domain class transcription factor (DUF630 and DUF632)__AT1G02110:AT1G02110:bZIP domain class t… 1Chr18:53855786–53862322 (-)2.343e-11