Soybean mGWAS DBExplore The Genetic Basis Of Soybean Metabolism Glycine max
Overview Annotation GWAS Evidence Associated genes

P50573

Metabolite ID
P50573
Deionized mass
432.0890 Da
Average m/z
433.0965
Average RT
26.9850
Adduct
[M+H]+
Association scope
Overlapping genes only
Associated genes
42
GWAS result file
Available
Open in Soybean Metabolome Repository

Candidate annotations

Search compound candidates by deionized mass and tolerance. Follow compound IDs for database records, or use name searches to explore chemistry and soybean literature. About candidate annotations

GWAS Evidence

Dataset: indexed GWAS records.

Settings

SNP counts, plot highlights, gene associations and downloads use P < 10⁻¹⁰. Changing the threshold updates this page together.

Loading GWAS records…

Loading Manhattan plot…

This Q–Q plot describes the indexed records. For downsampled files, it does not represent the distribution across all tested variants. Data coverage

Loading Q–Q plot…
Loading GWAS summary…

Associated genes

42 genes linked to SNP records with P < 10⁻¹⁰ in the selected scope. Supporting SNP records are counted per feature–gene pair.

Gene ID Alias Description Arabidopsis ortholog Supporting SNP recordsGene interval (1-based)Minimum P
Glyma.16G135000 hypothetical protein AT3G50910:AT3G50910:netrin receptor DCC 2Chr16:29248080–29253429 (-)3.117e-12
Glyma.16G144700 hypothetical protein AT5G66960:AT5G66960:Prolyl oligopeptidase family protein 2Chr16:30514629–30519598 (+)3.699e-13
Glyma.16G146700 hypothetical protein NA 2Chr16:30755899–30759360 (-)8.441e-12
Glyma.19G118900 hypothetical protein NA 2Chr19:37651114–37657346 (+)9.973e-12
Glyma.04G116900 hypothetical protein NA 1Chr04:13696275–13700803 (+)4.685e-11
Glyma.05G231800 ALDH2C1 aldehyde dehydrogenase family 2 member C1 AT3G24503:ALDH2C4:aldehyde dehydrogenase 2C4 1Chr05:40924505–40929251 (+)2.769e-12
Glyma.05G236400 hypothetical protein AT1G23210:GH9B6:glycosyl hydrolase 9B6__AT1G70710:GH9B1:glycosyl hydrolase 9B1 1Chr05:41274513–41279615 (-)2.322e-12
Glyma.05G236700 hypothetical protein AT4G33760:AT4G33760:tRNA synthetase class II (D, K and N) family protein 1Chr05:41301540–41310727 (+)2.197e-11
Glyma.06G125200 hypothetical protein AT4G27940:MTM1:manganese tracking factor for mitochondrial SOD2 1Chr06:10209787–10215982 (+)2.174e-11
Glyma.06G125300 hypothetical protein AT5G24105:AGP41:arabinogalactan protein 41 1Chr06:10216506–10218901 (-)2.174e-11
Glyma.08G303300 hypothetical protein NA 1Chr08:42134782–42139026 (+)4.839e-11
Glyma.08G303400 hypothetical protein NA 1Chr08:42139097–42147365 (+)4.839e-11
Glyma.12G202200 hypothetical protein AT2G20860:LIP1:lipoic acid synthase 1 1Chr12:36267599–36271584 (+)4.501e-13
Glyma.12G202300 hypothetical protein NA 1Chr12:36275438–36276838 (+)4.501e-13
Glyma.12G202400 hypothetical protein AT4G03415:PP2C52:Protein phosphatase 2C family protein 1Chr12:36289704–36295084 (-)6.837e-12
Glyma.12G203600 EXPB8 AT2G20750:EXPB1:expansin B1 1Chr12:36390283–36394245 (-)1.315e-12
Glyma.12G203700 hypothetical protein AT4G28260:AT4G28260:acyl-UDP-N-acetylglucosamine O-acyltransferase 1Chr12:36406747–36413696 (+)9.574e-12
Glyma.12G204000 hypothetical protein AT1G03687:AT1G03687:DTW domain-containing protein 1Chr12:36428558–36432835 (+)6.386e-11
Glyma.12G204400 hypothetical protein AT4G03560:TPC1:two-pore channel 1 1Chr12:36473422–36498915 (+)6.386e-11
Glyma.13G183400 hypothetical protein NA 1Chr13:29666942–29670201 (+)6.45e-11
Glyma.14G069500 hypothetical protein AT5G37810:NIP4;1:NOD26-like intrinsic protein 4;1 1Chr14:5822246–5825628 (-)3.532e-11
Glyma.14G093100 hypothetical protein NA 1Chr14:8654730–8655892 (-)8.162e-11
Glyma.14G190300 hypothetical protein AT2G04240:XERICO:RING/U-box superfamily protein 1Chr14:45531920–45533895 (-)3.594e-11
Glyma.14G190400 hypothetical protein AT3G07650:COL9:CONSTANS-like 9 1Chr14:45536719–45544087 (-)3.593e-11
Glyma.15G141100 hypothetical protein NA 1Chr15:11554310–11555089 (+)4.836e-13
Glyma.16G105100 hypothetical protein NA 1Chr16:21259552–21267517 (-)1.753e-11
Glyma.16G106300 hypothetical protein AT5G23900:AT5G23900:Ribosomal protein L13e family protein 1Chr16:21495147–21497932 (+)1.084e-12
Glyma.16G118200 hypothetical protein NA 1Chr16:26337169–26338323 (+)6.355e-11
Glyma.16G119400 hypothetical protein NA 1Chr16:26684278–26687087 (+)9.416e-11
Glyma.16G134900 hypothetical protein AT5G66470:AT5G66470:GTP-binding protein Era-like protein 1Chr16:29214758–29219443 (-)1.293e-13
Glyma.16G137000 hypothetical protein NA 1Chr16:29418205–29421765 (-)3.791e-11
Glyma.16G137100 hypothetical protein NA 1Chr16:29421091–29421534 (+)3.791e-11
Glyma.16G140600 hypothetical protein NA 1Chr16:29836830–29839178 (+)6.846e-11
Glyma.16G144100 hypothetical protein NA 1Chr16:30432951–30434052 (-)1.957e-12
Glyma.16G145100 hypothetical protein NA 1Chr16:30578388–30581421 (-)2.933e-13
Glyma.16G145600 hypothetical protein AT1G11310:MLO2:Seven transmembrane MLO family protein__AT2G39200:MLO12:Seven transmembrane MLO family protein__AT1G6156… 1Chr16:30652378–30659548 (+)2.933e-13
Glyma.16G146300 hypothetical protein NA 1Chr16:30714315–30716624 (+)8.44e-12
Glyma.16G147000 hypothetical protein NA 1Chr16:30773803–30777822 (-)9.958e-13
Glyma.19G119100 hypothetical protein AT3G03650:EDA5:Exostosin family protein 1Chr19:37668759–37672434 (+)9.973e-12
Glyma.19G119200 hypothetical protein AT3G03630:CS26:cysteine synthase 26 1Chr19:37677773–37683394 (+)4.833e-11
Glyma.20G198400 hypothetical protein NA 1Chr20:43601702–43633244 (+)3.657e-11
Glyma.20G198600 hypothetical protein AT5G51150:AT5G51150:Mitochondrial import inner membrane translocase subunit Tim17/Tim22/Tim23 family protein 1Chr20:43634710–43639892 (-)3.657e-11