Overview Annotation GWAS Evidence Associated genes

P50538

Metabolite ID
P50538
Deionized mass
626.3812 Da
Average m/z
627.3893
Average RT
26.9733
Adduct
[M+H]+
Association scope
Overlapping genes only
Associated genes
8
GWAS result file
Available

Candidate annotations

Search compound candidates by deionized mass and tolerance. Follow compound IDs for database records, or use name searches to explore chemistry and soybean literature. About candidate annotations

GWAS Evidence

Dataset: indexed GWAS records.

Settings

SNP counts, plot highlights, gene associations and downloads use P < 10⁻¹⁰. Changing the threshold updates this page together.

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This Q–Q plot describes the indexed records. For downsampled files, it does not represent the distribution across all tested variants. Data coverage

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Associated genes

8 genes linked to SNP records with P < 10⁻¹⁰ in the selected scope. Supporting SNP records are counted per feature–gene pair.

Gene ID Alias Description Arabidopsis ortholog Supporting SNP recordsGene interval (1-based)Minimum P
Glyma.02G137500 hypothetical protein AT3G59660:AT3G59660:C2 domain-containing protein / GRAM domain-containing protein 1Chr02:14220675–14226291 (-)1.751e-11
Glyma.02G137800 hypothetical protein AT3G59670:AT3G59670:elongation factor 1Chr02:14259785–14264648 (+)1.751e-11
Glyma.17G119400 hypothetical protein NA 1Chr17:9422086–9440192 (-)3.647e-16
Glyma.17G119600 hypothetical protein AT2G03500:AT2G03500:Homeodomain-like superfamily protein 1Chr17:9458535–9461660 (-)3.647e-16
Glyma.17G120000 hypothetical protein NA 1Chr17:9504779–9513690 (+)5.773e-16
Glyma.17G120800 hypothetical protein AT3G24330:AT3G24330:O-Glycosyl hydrolases family 17 protein 1Chr17:9619511–9629020 (-)5.773e-16
Glyma.17G121900 hypothetical protein AT3G18560:AT3G18560:uncharacterized protein__AT1G49000:AT1G49000:uncharacterized protein 1Chr17:9763577–9764504 (+)5.773e-16
Glyma.17G122800 hypothetical protein NA 1Chr17:9810524–9811673 (+)5.773e-16