Soybean mGWAS DBExplore The Genetic Basis Of Soybean Metabolism Glycine max
Overview Annotation GWAS Evidence Associated genes

P50536

Metabolite ID
P50536
Deionized mass
170.1042 Da
Average m/z
171.1107
Average RT
26.9730
Adduct
[M+H]+
Association scope
Overlapping genes only
Associated genes
60
GWAS result file
Available
Open in Soybean Metabolome Repository

Candidate annotations

Search compound candidates by deionized mass and tolerance. Follow compound IDs for database records, or use name searches to explore chemistry and soybean literature. About candidate annotations

GWAS Evidence

Dataset: indexed GWAS records.

Settings

SNP counts, plot highlights, gene associations and downloads use P < 10⁻¹⁰. Changing the threshold updates this page together.

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Associated genes

60 genes linked to SNP records with P < 10⁻¹⁰ in the selected scope. Supporting SNP records are counted per feature–gene pair.

Gene ID Alias Description Arabidopsis ortholog Supporting SNP recordsGene interval (1-based)Minimum P
Glyma.13G134400 hypothetical protein AT2G37370:AT2G37370:centrosomal protein of 135 kDa-like protein 3Chr13:24677399–24693129 (-)1.484e-11
Glyma.16G209300 hypothetical protein NA 3Chr16:36856833–36863994 (-)4.983e-12
Glyma.02G188300 hypothetical protein NA 2Chr02:35008552–35027979 (-)1.338e-11
Glyma.10G081700 hypothetical protein NA 2Chr10:9752508–9758422 (+)4.975e-13
Glyma.02G151500 hypothetical protein AT2G47990:SWA1:transducin family protein / WD-40 repeat family protein 1Chr02:15586732–15588774 (+)7.663e-12
Glyma.02G205300 hypothetical protein NA 1Chr02:39037472–39038396 (-)8.358e-11
Glyma.03G023000 hypothetical protein AT4G00220:JLO:Lateral organ boundaries (LOB) domain family protein 1Chr03:2423540–2428634 (-)1.936e-16
Glyma.03G209700 hypothetical protein NA 1Chr03:41646792–41648527 (+)4.717e-11
Glyma.04G044800 LBD16 LBD domain-containing transcription factor NA 1Chr04:3582233–3583098 (-)6.763e-11
Glyma.04G086300 hypothetical protein NA 1Chr04:7340889–7346287 (+)2.059e-12
Glyma.04G086600 hypothetical protein NA 1Chr04:7374806–7380808 (+)6.742e-12
Glyma.05G124700 hypothetical protein NA 1Chr05:31807311–31817648 (+)1.784e-12
Glyma.05G236400 hypothetical protein AT1G23210:GH9B6:glycosyl hydrolase 9B6__AT1G70710:GH9B1:glycosyl hydrolase 9B1 1Chr05:41274513–41279615 (-)3.388e-12
Glyma.05G236700 hypothetical protein AT4G33760:AT4G33760:tRNA synthetase class II (D, K and N) family protein 1Chr05:41301540–41310727 (+)1.164e-13
Glyma.07G040200 hypothetical protein NA 1Chr07:3324393–3329481 (-)3.745e-11
Glyma.07G091400 COL21 CONSTANS-like zinc finger protein AT1G25440:BBX15:B-box type zinc finger protein with CCT domain-containing protein 1Chr07:8539101–8547001 (+)1.956e-12
Glyma.08G114700 hypothetical protein AT3G13600:AT3G13600:calmodulin-binding family protein 1Chr08:8768854–8772973 (-)8.364e-11
Glyma.08G202000 hypothetical protein AT1G52150:ATHB-15:Homeobox-leucine zipper family protein / lipid-binding START domain-containing protein 1Chr08:16375907–16384294 (-)7.625e-11
Glyma.09G004900 hypothetical protein AT4G22030:AT4G22030:F-box protein with a domain protein 1Chr09:397361–398713 (-)6.269e-11
Glyma.09G011700 hypothetical protein NA 1Chr09:894858–897607 (-)1.63e-11
Glyma.09G012200 hypothetical protein AT2G35760:AT2G35760:Uncharacterized protein family (UPF0497) 1Chr09:937048–940244 (+)1.543e-11
Glyma.09G016500 hypothetical protein NA 1Chr09:1274652–1276853 (-)1.932e-11
Glyma.09G016800 hypothetical protein NA 1Chr09:1300913–1311894 (+)4e-11
Glyma.10G078700 hypothetical protein NA 1Chr10:8882318–8903950 (+)5.269e-11
Glyma.10G079100 hypothetical protein NA 1Chr10:8960669–8962364 (-)5.269e-11
Glyma.10G079700 hypothetical protein AT2G35980:YLS9:Late embryosis abundant (LEA) hydroxyproline-rich glycoprotein family 1Chr10:9218478–9219468 (-)2.41e-12
Glyma.10G079800 hypothetical protein NA 1Chr10:9223520–9228511 (-)5.269e-11
Glyma.10G080000 hypothetical protein AT3G11660:NHL1:NDR1/HIN1-like 1__AT3G52470:AT3G52470:Late embryosis abundant (LEA) hydroxyproline-rich glycoprotein fam… 1Chr10:9258476–9260697 (-)5.269e-11
Glyma.10G080600 hypothetical protein NA 1Chr10:9501678–9504456 (+)3.36e-12
Glyma.10G080700 hypothetical protein NA 1Chr10:9510013–9512097 (+)3.36e-12
Glyma.10G080900 hypothetical protein NA 1Chr10:9552268–9552854 (+)3.36e-12
Glyma.10G081200 hypothetical protein NA 1Chr10:9600771–9603988 (-)3.853e-11
Glyma.10G082100 hypothetical protein AT3G05680:EMB2016:embryo defective 2016 1Chr10:9934486–9960586 (-)5.065e-11
Glyma.11G048300 hypothetical protein AT4G37640:ACA2:calcium ATPase 2 1Chr11:3601241–3607177 (+)1.619e-11
Glyma.11G049700 hypothetical protein NA 1Chr11:3731308–3734534 (+)2.738e-11
Glyma.11G050300 hypothetical protein AT2G23093:AT2G23093:Major facilitator superfamily protein 1Chr11:3765453–3771565 (+)9.478e-11
Glyma.11G050500 hypothetical protein AT5G67370:CGLD27:DUF1230 family protein (DUF1230) 1Chr11:3778152–3782174 (+)9.478e-11
Glyma.11G050600 hypothetical protein NA 1Chr11:3779988–3786583 (-)9.478e-11
Glyma.11G051600 hypothetical protein NA 1Chr11:3857225–3859564 (-)9.478e-11
Glyma.11G182600 hypothetical protein AT5G22400:AT5G22400:Rho GTPase activating protein with PAK-box/P21-Rho-binding domain-containing protein 1Chr11:24998933–25003549 (-)1.11e-11
Glyma.11G182700 hypothetical protein AT1G32250:AT1G32250:Calcium-binding EF-hand family protein 1Chr11:25028353–25031056 (-)2.172e-11
Glyma.12G108600 hypothetical protein NA 1Chr12:9994609–9997302 (-)6.258e-11
Glyma.12G109500 hypothetical protein AT4G03415:PP2C52:Protein phosphatase 2C family protein 1Chr12:10308026–10314332 (-)6.258e-11
Glyma.12G183400 hypothetical protein NA 1Chr12:34427496–34440319 (-)1.946e-11
Glyma.13G134300 hypothetical protein NA 1Chr13:24664171–24665742 (-)1.484e-11
Glyma.13G134500 hypothetical protein AT3G09560:PAH1:Lipin family protein 1Chr13:24696109–24705068 (-)4.392e-11
Glyma.15G121100 hypothetical protein NA 1Chr15:9567797–9570248 (+)8.957e-14
Glyma.15G121300 hypothetical protein AT5G47760:PGLP2:2-phosphoglycolate phosphatase 2 1Chr15:9584685–9590201 (-)1.115e-13
Glyma.15G121500 hypothetical protein AT1G03370:AT1G03370:C2 calcium/lipid-binding and GRAM domain containing protein 1Chr15:9602794–9615281 (+)8.957e-14
Glyma.15G121800 hypothetical protein NA 1Chr15:9643746–9648073 (+)8.957e-14
Glyma.16G208500 EIF6 AT3G55620:eIF6A:Translation initiation factor IF6 1Chr16:36806718–36809299 (+)2.821e-11
Glyma.16G210300 hypothetical protein AT1G73340:AT1G73340:Cytochrome P450 superfamily protein 1Chr16:36943073–36948828 (+)4.031e-12
Glyma.16G210400 hypothetical protein AT1G73350:AT1G73350:ankyrin repeat protein 1Chr16:36949685–36953467 (+)4.031e-12
Glyma.17G064000 hypothetical protein AT2G18840:AT2G18840:Integral membrane Yip1 family protein__AT4G30260:AT4G30260:Integral membrane Yip1 family protein 1Chr17:4924830–4930155 (-)8.861e-13
Glyma.17G064200 hypothetical protein AT5G57500:AT5G57500:Galactosyltransferase family protein 1Chr17:4943412–4944357 (-)8.861e-13
Glyma.18G227400 hypothetical protein AT2G45720:AT2G45720:ARM repeat superfamily protein 1Chr18:51650951–51654636 (-)3.986e-11
Glyma.18G230700 hypothetical protein AT3G61290:AT3G61290:O-glucosyltransferase rumi-like protein (DUF821) 1Chr18:51943730–51947645 (+)8.86e-11
Glyma.20G013100 hypothetical protein NA 1Chr20:1134080–1135710 (-)3.476e-13
Glyma.20G019800 hypothetical protein AT1G49350:AT1G49350:pfkB-like carbohydrate kinase family protein 1Chr20:2051817–2057262 (+)3.417e-12
Glyma.20G106900 hypothetical protein NA 1Chr20:34962043–34967985 (+)3.623e-11