Soybean mGWAS DBExplore The Genetic Basis Of Soybean Metabolism Glycine max
Overview Annotation GWAS Evidence Associated genes

P50482

Metabolite ID
P50482
Deionized mass
154.0987 Da
Average m/z
155.1055
Average RT
26.9527
Adduct
[M+H]+
Association scope
Overlapping genes only
Associated genes
148
GWAS result file
Available
Open in Soybean Metabolome Repository

Candidate annotations

Search compound candidates by deionized mass and tolerance. Follow compound IDs for database records, or use name searches to explore chemistry and soybean literature. About candidate annotations

GWAS Evidence

Dataset: indexed GWAS records.

Settings

SNP counts, plot highlights, gene associations and downloads use P < 10⁻¹⁰. Changing the threshold updates this page together.

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Associated genes

148 genes linked to SNP records with P < 10⁻¹⁰ in the selected scope. Supporting SNP records are counted per feature–gene pair.

Gene ID Alias Description Arabidopsis ortholog Supporting SNP recordsGene interval (1-based)Minimum P
Glyma.16G209300 hypothetical protein NA 4Chr16:36856833–36863994 (-)2.54e-13
Glyma.03G023000 hypothetical protein AT4G00220:JLO:Lateral organ boundaries (LOB) domain family protein 3Chr03:2423540–2428634 (-)8.78e-18
Glyma.16G147900 hypothetical protein NA 3Chr16:30864919–30872425 (+)4.874e-11
Glyma.16G210200 hypothetical protein NA 3Chr16:36933402–36938940 (+)6.709e-11
Glyma.03G040600 hypothetical protein AT2G38400:AGT3:alanine:glyoxylate aminotransferase 3 2Chr03:5113019–5121557 (+)3.369e-13
Glyma.03G242800 hypothetical protein AT4G08630:AT4G08630:fas-binding factor-like protein 2Chr03:44064511–44073939 (+)1.996e-11
Glyma.03G251100 hypothetical protein AT3G04490:AT3G04490:exportin-4 protein 2Chr03:44673965–44702804 (-)2.331e-14
Glyma.04G084800 hypothetical protein AT5G11630:NOXY2:uncharacterized protein 2Chr04:7187985–7192897 (+)9.281e-12
Glyma.06G183500 hypothetical protein AT5G50000:AT5G50000:Protein kinase superfamily protein 2Chr06:15828917–15834067 (+)3.982e-11
Glyma.07G021800 hypothetical protein AT1G80920:J8:Chaperone DnaJ-domain superfamily protein 2Chr07:1697119–1698666 (+)2.486e-11
Glyma.12G212300 hypothetical protein AT3G58710:WRKY69:WRKY DNA-binding protein 69 2Chr12:37131153–37134096 (+)3.195e-12
Glyma.13G134400 hypothetical protein AT2G37370:AT2G37370:centrosomal protein of 135 kDa-like protein 2Chr13:24677399–24693129 (-)8.914e-12
Glyma.13G135700 hypothetical protein NA 2Chr13:24812720–24818735 (+)7.871e-14
Glyma.13G135800 hypothetical protein AT5G02800:CDL1:Protein kinase superfamily protein 2Chr13:24820151–24823999 (-)7.871e-14
Glyma.17G215800 Aberrant root formation protein 4 AT5G11030:ALF4:aberrant root formation protein 2Chr17:36328551–36338097 (+)4.457e-11
Glyma.01G045600 hypothetical protein NA 1Chr01:5242432–5245038 (-)9.366e-11
Glyma.01G169700 hypothetical protein AT4G36410:UBC17:ubiquitin-conjugating enzyme 17 1Chr01:50715084–50719427 (-)5.394e-12
Glyma.01G169800 hypothetical protein AT4G36400:D2HGDH:FAD-linked oxidases family protein 1Chr01:50726088–50733347 (-)5.394e-12
Glyma.02G204700 hypothetical protein AT4G30610:BRS1:alpha/beta-Hydrolases superfamily protein 1Chr02:38993365–39000790 (+)8.488e-11
Glyma.02G205300 hypothetical protein NA 1Chr02:39037472–39038396 (-)1.299e-11
Glyma.03G007100 hypothetical protein AT5G17780:AT5G17780:alpha/beta-Hydrolases superfamily protein__AT5G17720:AT5G17720:alpha/beta-Hydrolases superfamily pr… 1Chr03:647777–651152 (-)2.043e-11
Glyma.03G008300 hypothetical protein AT4G00400:GPAT8:glycerol-3-phosphate acyltransferase 8 1Chr03:801855–806650 (-)7.432e-11
Glyma.03G021700 hypothetical protein AT2G45490:AUR3:ataurora3 1Chr03:2248429–2251737 (+)5.923e-13
Glyma.03G022100 hypothetical protein AT4G32430:AT4G32430:Pentatricopeptide repeat (PPR) superfamily protein 1Chr03:2301675–2307263 (+)1.871e-14
Glyma.03G124500 hypothetical protein NA 1Chr03:33758928–33762195 (+)8.052e-11
Glyma.03G135600 hypothetical protein NA 1Chr03:35109981–35110632 (-)3.699e-11
Glyma.03G136000 hypothetical protein NA 1Chr03:35138670–35188160 (-)8.877e-12
Glyma.03G177700 hypothetical protein NA 1Chr03:39046772–39051158 (+)6.376e-11
Glyma.03G250400 hypothetical protein AT3G04470:AT3G04470:Ankyrin repeat family protein 1Chr03:44616824–44621636 (-)2.212e-13
Glyma.03G252800 hypothetical protein AT5G18430:AT5G18430:GDSL-like Lipase/Acylhydrolase superfamily protein 1Chr03:44849419–44851672 (+)1.358e-12
Glyma.04G014300 hypothetical protein AT1G20880:AT1G20880:RNA-binding (RRM/RBD/RNP motifs) family protein 1Chr04:1101709–1106543 (+)3.316e-11
Glyma.04G014600 hypothetical protein NA 1Chr04:1119108–1123175 (+)3.316e-11
Glyma.04G084200 hypothetical protein AT2G25830:AT2G25830:YebC-like protein 1Chr04:7137351–7146570 (-)6.446e-11
Glyma.04G084300 hypothetical protein AT2G25800:AT2G25800:elongation factor Ts (DUF810) 1Chr04:7153009–7158438 (+)2.233e-12
Glyma.04G086600 hypothetical protein NA 1Chr04:7374806–7380808 (+)5.61e-12
Glyma.04G116900 hypothetical protein NA 1Chr04:13696275–13700803 (+)3.1e-12
Glyma.05G124700 hypothetical protein NA 1Chr05:31807311–31817648 (+)3.557e-12
Glyma.05G126400 hypothetical protein NA 1Chr05:31961493–31968339 (+)1.555e-12
Glyma.05G164700 hypothetical protein NA 1Chr05:35543931–35549196 (-)9.157e-11
Glyma.05G231800 ALDH2C1 aldehyde dehydrogenase family 2 member C1 AT3G24503:ALDH2C4:aldehyde dehydrogenase 2C4 1Chr05:40924505–40929251 (+)3.767e-12
Glyma.05G236400 hypothetical protein AT1G23210:GH9B6:glycosyl hydrolase 9B6__AT1G70710:GH9B1:glycosyl hydrolase 9B1 1Chr05:41274513–41279615 (-)1.61e-16
Glyma.05G236700 hypothetical protein AT4G33760:AT4G33760:tRNA synthetase class II (D, K and N) family protein 1Chr05:41301540–41310727 (+)7.727e-17
Glyma.05G237800 hypothetical protein AT1G48790:AMSH1:associated molecule with the SH3 domain of STAM 1 1Chr05:41406807–41413022 (-)7.801e-11
Glyma.06G084800 hypothetical protein NA 1Chr06:6515571–6517480 (-)6.288e-11
Glyma.06G085000 hypothetical protein NA 1Chr06:6524339–6529016 (-)6.288e-11
Glyma.06G085100 hypothetical protein NA 1Chr06:6531956–6537295 (-)6.288e-11
Glyma.06G085200 hypothetical protein NA 1Chr06:6540849–6545557 (+)2.989e-11
Glyma.06G261900 hypothetical protein NA 1Chr06:44875369–44879702 (-)9.681e-11
Glyma.06G291600 hypothetical protein AT4G22930:PYR4:pyrimidin 4 1Chr06:48024204–48029614 (+)1.874e-11
Glyma.06G292000 hypothetical protein NA 1Chr06:48081084–48084476 (-)1.874e-11
Glyma.06G292100 hypothetical protein NA 1Chr06:48095366–48097378 (+)1.874e-11
Glyma.07G013400 hypothetical protein AT3G21310:AT3G21310:Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein 1Chr07:1028243–1033837 (-)9.179e-12
Glyma.07G013500 hypothetical protein NA 1Chr07:1036819–1041984 (-)9.179e-12
Glyma.07G075000 hypothetical protein AT5G60990:AT5G60990:DEA(D/H)-box RNA helicase family protein 1Chr07:6821674–6829551 (-)1.746e-11
Glyma.07G075300 hypothetical protein NA 1Chr07:6843882–6845602 (-)1.746e-11
Glyma.07G087700 hypothetical protein AT3G24495:MSH7:MUTS homolog 7 1Chr07:8111751–8121053 (+)3.077e-11
Glyma.07G091400 COL21 CONSTANS-like zinc finger protein AT1G25440:BBX15:B-box type zinc finger protein with CCT domain-containing protein 1Chr07:8539101–8547001 (+)4.016e-11
Glyma.07G100400 hypothetical protein AT3G18050:AT3G18050:GPI-anchored protein 1Chr07:9523110–9526319 (+)6.912e-11
Glyma.08G016700 hypothetical protein AT1G63840:AT1G63840:RING/U-box superfamily protein 1Chr08:1330226–1331366 (-)2.421e-14
Glyma.08G139300 hypothetical protein AT2G22125:CSI1:binding protein 1Chr08:10653279–10664544 (-)2.368e-11
Glyma.08G149500 hypothetical protein NA 1Chr08:11460264–11465243 (-)8.511e-11
Glyma.08G202000 hypothetical protein AT1G52150:ATHB-15:Homeobox-leucine zipper family protein / lipid-binding START domain-containing protein 1Chr08:16375907–16384294 (-)4.156e-14
Glyma.08G210200 hypothetical protein NA 1Chr08:17010526–17012557 (+)1.95e-11
Glyma.08G210300 hypothetical protein NA 1Chr08:17011623–17012548 (-)1.95e-11
Glyma.08G211800 hypothetical protein NA 1Chr08:17104514–17105442 (-)7.833e-13
Glyma.09G058900 hypothetical protein NA 1Chr09:5397968–5404650 (-)7.391e-11
Glyma.09G238200 NIP2-1 putative Si transporter NIP2-1 NA 1Chr09:46029192–46034136 (+)6.958e-11
Glyma.09G253800 hypothetical protein NA 1Chr09:47356240–47357763 (-)9.61e-11
Glyma.09G253900 hypothetical protein NA 1Chr09:47359742–47364806 (-)9.61e-11
Glyma.10G078700 hypothetical protein NA 1Chr10:8882318–8903950 (+)1.468e-12
Glyma.10G079100 hypothetical protein NA 1Chr10:8960669–8962364 (-)1.468e-12
Glyma.10G079800 hypothetical protein NA 1Chr10:9223520–9228511 (-)1.468e-12
Glyma.10G080000 hypothetical protein AT3G11660:NHL1:NDR1/HIN1-like 1__AT3G52470:AT3G52470:Late embryosis abundant (LEA) hydroxyproline-rich glycoprotein fam… 1Chr10:9258476–9260697 (-)1.468e-12
Glyma.10G081200 hypothetical protein NA 1Chr10:9600771–9603988 (-)1.288e-12
Glyma.10G081700 hypothetical protein NA 1Chr10:9752508–9758422 (+)3.303e-11
Glyma.10G172600 hypothetical protein AT5G41900:AT5G41900:alpha/beta-Hydrolases superfamily protein__AT1G64670:BDG1:alpha/beta-Hydrolases superfamily protein 1Chr10:40628401–40633140 (-)7.455e-12
Glyma.10G238200 hypothetical protein AT5G07250:RBL3:RHOMBOID-like protein 3 1Chr10:46680865–46684088 (+)1.059e-12
Glyma.11G015300 hypothetical protein AT3G60500:CER7:3'-5'-exoribonuclease family protein 1Chr11:1048122–1055388 (+)2.315e-11
Glyma.11G048300 hypothetical protein AT4G37640:ACA2:calcium ATPase 2 1Chr11:3601241–3607177 (+)1.047e-14
Glyma.11G049700 hypothetical protein NA 1Chr11:3731308–3734534 (+)5.558e-18
Glyma.11G050300 hypothetical protein AT2G23093:AT2G23093:Major facilitator superfamily protein 1Chr11:3765453–3771565 (+)3.515e-18
Glyma.11G050500 hypothetical protein AT5G67370:CGLD27:DUF1230 family protein (DUF1230) 1Chr11:3778152–3782174 (+)3.515e-18
Glyma.11G050600 hypothetical protein NA 1Chr11:3779988–3786583 (-)3.515e-18
Glyma.11G051600 hypothetical protein NA 1Chr11:3857225–3859564 (-)3.515e-18
Glyma.11G095100 hypothetical protein NA 1Chr11:7212438–7214276 (-)4.251e-11
Glyma.11G105500 hypothetical protein AT2G16640:TOC132:multimeric translocon complex in the outer envelope membrane 132 1Chr11:8015639–8020644 (-)3.28e-11
Glyma.11G127100 hypothetical protein AT1G06040:STO:B-box zinc finger family protein 1Chr11:9656242–9659517 (+)1.735e-11
Glyma.11G127200 hypothetical protein AT3G59480:AT3G59480:pfkB-like carbohydrate kinase family protein 1Chr11:9660434–9665570 (-)1.735e-11
Glyma.11G127300 hypothetical protein AT2G28480:AT2G28480:RNA-binding CRS1 / YhbY (CRM) domain protein 1Chr11:9667918–9671917 (-)1.735e-11
Glyma.11G182600 hypothetical protein AT5G22400:AT5G22400:Rho GTPase activating protein with PAK-box/P21-Rho-binding domain-containing protein 1Chr11:24998933–25003549 (-)7.529e-13
Glyma.11G182700 hypothetical protein AT1G32250:AT1G32250:Calcium-binding EF-hand family protein 1Chr11:25028353–25031056 (-)3.244e-12
Glyma.11G182800 hypothetical protein AT2G27460:AT2G27460:sec23/sec24 transport family protein 1Chr11:25044939–25052549 (+)2.019e-11
Glyma.12G108600 hypothetical protein NA 1Chr12:9994609–9997302 (-)1.819e-13
Glyma.12G109500 hypothetical protein AT4G03415:PP2C52:Protein phosphatase 2C family protein 1Chr12:10308026–10314332 (-)1.819e-13
Glyma.12G114500 hypothetical protein AT4G22930:PYR4:pyrimidin 4 1Chr12:11396572–11400825 (-)1.167e-16
Glyma.12G114900 hypothetical protein NA 1Chr12:11457987–11462951 (-)1.167e-16
Glyma.12G186200 hypothetical protein AT3G44350:NAC061:NAC domain containing protein 61 1Chr12:34708678–34710549 (+)1.186e-11
Glyma.12G193800 hypothetical protein AT2G05710:ACO3:aconitase 3 1Chr12:35551596–35559129 (+)1.298e-11
Glyma.12G202200 hypothetical protein AT2G20860:LIP1:lipoic acid synthase 1 1Chr12:36267599–36271584 (+)7.002e-13
Glyma.12G202300 hypothetical protein NA 1Chr12:36275438–36276838 (+)7.002e-13
Glyma.12G202400 hypothetical protein AT4G03415:PP2C52:Protein phosphatase 2C family protein 1Chr12:36289704–36295084 (-)3.188e-11
Glyma.12G204000 hypothetical protein AT1G03687:AT1G03687:DTW domain-containing protein 1Chr12:36428558–36432835 (+)2.043e-11
Glyma.12G204400 hypothetical protein AT4G03560:TPC1:two-pore channel 1 1Chr12:36473422–36498915 (+)2.043e-11
Glyma.12G212800 hypothetical protein NA 1Chr12:37179924–37185798 (-)3.468e-12
Glyma.13G134300 hypothetical protein NA 1Chr13:24664171–24665742 (-)8.914e-12
Glyma.13G135300 hypothetical protein NA 1Chr13:24770681–24773826 (+)6.088e-12
Glyma.13G135400 hypothetical protein AT5G12130:PDE149:integral membrane TerC family protein 1Chr13:24786242–24791938 (+)6.088e-12
Glyma.13G135500 hypothetical protein AT5G02780:GSTL1:glutathione transferase lambda 1 1Chr13:24798567–24801567 (+)7.871e-14
Glyma.13G197700 hypothetical protein AT5G38730:AT5G38730:Tetratricopeptide repeat (TPR)-like superfamily protein 1Chr13:31174654–31180595 (-)2.999e-12
Glyma.13G201600 hypothetical protein NA 1Chr13:31521512–31522992 (+)5.45e-12
Glyma.13G319700 hypothetical protein NA 1Chr13:41414504–41418957 (+)8.241e-11
Glyma.14G013500 hypothetical protein AT4G25434:NUDT10:nudix hydrolase homolog 10 1Chr14:1009519–1014238 (+)7.829e-11
Glyma.14G066800 hypothetical protein NA 1Chr14:5511222–5513114 (+)1.213e-11
Glyma.14G094200 hypothetical protein AT5G11840:AT5G11840:YCF36, putative (DUF1230) 1Chr14:8770378–8774149 (-)2.589e-12
Glyma.14G094300 hypothetical protein NA 1Chr14:8771316–8772515 (+)2.589e-12
Glyma.14G094900 hypothetical protein AT1G60960:IRT3:iron regulated transporter 3 1Chr14:8824846–8827258 (-)2.329e-15
Glyma.14G204400 hypothetical protein AT2G30470:HSI2:B3 domain-containing transcription repressor VAL1 1Chr14:46936057–46943868 (-)3.711e-11
Glyma.15G121100 hypothetical protein NA 1Chr15:9567797–9570248 (+)2.114e-13
Glyma.15G121300 hypothetical protein AT5G47760:PGLP2:2-phosphoglycolate phosphatase 2 1Chr15:9584685–9590201 (-)2.947e-13
Glyma.15G121500 hypothetical protein AT1G03370:AT1G03370:C2 calcium/lipid-binding and GRAM domain containing protein 1Chr15:9602794–9615281 (+)2.114e-13
Glyma.15G121800 hypothetical protein NA 1Chr15:9643746–9648073 (+)2.114e-13
Glyma.15G124000 hypothetical protein NA 1Chr15:9845097–9849312 (-)1.785e-13
Glyma.15G124500 MLO-like protein 13 AT4G24250:MLO13:Seven transmembrane MLO family protein 1Chr15:9888761–9894068 (-)4.402e-16
Glyma.15G139000 hypothetical protein NA 1Chr15:11314329–11317181 (-)5.319e-11
Glyma.15G256300 hypothetical protein NA 1Chr15:48546007–48547401 (-)3.504e-15
Glyma.15G257100 hypothetical protein AT1G56070:LOS1:Ribosomal protein S5/Elongation factor G/III/V family protein 1Chr15:48661607–48665946 (-)5.604e-11
Glyma.16G025300 hypothetical protein NA 1Chr16:2438122–2440528 (-)4.443e-11
Glyma.16G025400 hypothetical protein AT2G46430:CNGC3:cyclic nucleotide gated channel 3 1Chr16:2443212–2450834 (-)4.443e-11
Glyma.16G028100 hypothetical protein AT3G07570:AT3G07570:Cytochrome b561/ferric reductase transmembrane with DOMON related domain-containing protein 1Chr16:2725294–2733429 (-)1.055e-12
Glyma.16G139500 hypothetical protein AT5G66550:AT5G66550:Maf-like protein 1Chr16:29686243–29690410 (-)8.499e-13
Glyma.16G160900 hypothetical protein NA 1Chr16:32013447–32016235 (+)7.881e-12
Glyma.16G161500 hypothetical protein NA 1Chr16:32076715–32092322 (-)3.8e-12
Glyma.16G207900 hypothetical protein AT5G08450:AT5G08450:zinc finger CCCH domain protein 1Chr16:36754888–36763450 (+)2.973e-11
Glyma.16G208500 EIF6 AT3G55620:eIF6A:Translation initiation factor IF6 1Chr16:36806718–36809299 (+)6.016e-13
Glyma.16G209000 hypothetical protein NA 1Chr16:36841786–36845498 (-)7.243e-12
Glyma.16G209900 hypothetical protein NA 1Chr16:36919141–36924601 (+)6.709e-11
Glyma.16G210300 hypothetical protein AT1G73340:AT1G73340:Cytochrome P450 superfamily protein 1Chr16:36943073–36948828 (+)2.65e-14
Glyma.16G210400 hypothetical protein AT1G73350:AT1G73350:ankyrin repeat protein 1Chr16:36949685–36953467 (+)2.65e-14
Glyma.17G064000 hypothetical protein AT2G18840:AT2G18840:Integral membrane Yip1 family protein__AT4G30260:AT4G30260:Integral membrane Yip1 family protein 1Chr17:4924830–4930155 (-)5.295e-12
Glyma.17G064200 hypothetical protein AT5G57500:AT5G57500:Galactosyltransferase family protein 1Chr17:4943412–4944357 (-)5.295e-12
Glyma.17G211500 hypothetical protein AT4G32272:AT4G32272:Nucleotide/sugar transporter family protein 1Chr17:34916813–34922875 (+)6.557e-11
Glyma.17G211600 hypothetical protein NA 1Chr17:34925097–34929797 (+)4.074e-11
Glyma.17G215500 KNAT5 NA 1Chr17:36212363–36217688 (-)1.057e-13
Glyma.17G215700 hypothetical protein AT5G11040:TRS120:TRS120 1Chr17:36319785–36329259 (-)4.457e-11
Glyma.18G251900 hypothetical protein AT3G60320:AT3G60320:bZIP domain class transcription factor (DUF630 and DUF632)__AT1G02110:AT1G02110:bZIP domain class t… 1Chr18:53855786–53862322 (-)5.128e-11
Glyma.19G218100 hypothetical protein AT1G02390:GPAT2:glycerol-3-phosphate acyltransferase 2 1Chr19:47082133–47085750 (+)4.572e-12
Glyma.19G247800 hypothetical protein NA 1Chr19:49385792–49388122 (-)2.783e-12
Glyma.20G019800 hypothetical protein AT1G49350:AT1G49350:pfkB-like carbohydrate kinase family protein 1Chr20:2051817–2057262 (+)2.265e-11