Soybean mGWAS DBExplore The Genetic Basis Of Soybean Metabolism Glycine max
Overview Annotation GWAS Evidence Associated genes

P50422

Metabolite ID
P50422
Deionized mass
206.0852 Da
Average m/z
207.0938
Average RT
26.9026
Adduct
[M+H]+
Association scope
Overlapping genes only
Associated genes
62
GWAS result file
Available
Open in Soybean Metabolome Repository

Candidate annotations

Search compound candidates by deionized mass and tolerance. Follow compound IDs for database records, or use name searches to explore chemistry and soybean literature. About candidate annotations

GWAS Evidence

Dataset: indexed GWAS records.

Settings

SNP counts, plot highlights, gene associations and downloads use P < 10⁻¹⁰. Changing the threshold updates this page together.

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Associated genes

62 genes linked to SNP records with P < 10⁻¹⁰ in the selected scope. Supporting SNP records are counted per feature–gene pair.

Gene ID Alias Description Arabidopsis ortholog Supporting SNP recordsGene interval (1-based)Minimum P
Glyma.08G114400 hypothetical protein AT4G25650:ACD1-LIKE:ACD1-like protein 2Chr08:8750828–8756629 (-)1.996e-11
Glyma.16G121500 hypothetical protein NA 2Chr16:27007186–27010856 (+)7.517e-12
Glyma.16G203300 hypothetical protein AT5G62230:ERL1:ERECTA-like 1 2Chr16:36437330–36445131 (+)2.026e-11
Glyma.01G169700 hypothetical protein AT4G36410:UBC17:ubiquitin-conjugating enzyme 17 1Chr01:50715084–50719427 (-)1.279e-12
Glyma.01G169800 hypothetical protein AT4G36400:D2HGDH:FAD-linked oxidases family protein 1Chr01:50726088–50733347 (-)1.279e-12
Glyma.03G023000 hypothetical protein AT4G00220:JLO:Lateral organ boundaries (LOB) domain family protein 1Chr03:2423540–2428634 (-)4.209e-18
Glyma.03G042500 hypothetical protein NA 1Chr03:5367447–5370281 (+)2.878e-11
Glyma.03G177700 hypothetical protein NA 1Chr03:39046772–39051158 (+)2.37e-11
Glyma.05G236400 hypothetical protein AT1G23210:GH9B6:glycosyl hydrolase 9B6__AT1G70710:GH9B1:glycosyl hydrolase 9B1 1Chr05:41274513–41279615 (-)1.354e-15
Glyma.05G236700 hypothetical protein AT4G33760:AT4G33760:tRNA synthetase class II (D, K and N) family protein 1Chr05:41301540–41310727 (+)1.955e-14
Glyma.05G237800 hypothetical protein AT1G48790:AMSH1:associated molecule with the SH3 domain of STAM 1 1Chr05:41406807–41413022 (-)7.135e-12
Glyma.06G125200 hypothetical protein AT4G27940:MTM1:manganese tracking factor for mitochondrial SOD2 1Chr06:10209787–10215982 (+)4.087e-12
Glyma.06G125300 hypothetical protein AT5G24105:AGP41:arabinogalactan protein 41 1Chr06:10216506–10218901 (-)4.087e-12
Glyma.06G126900 hypothetical protein AT5G04520:AT5G04520:3-oxoacyl-acyl-carrier synthase-like protein (Protein of unknown function DUF455) 1Chr06:10403126–10408307 (-)8.386e-15
Glyma.06G260900 hypothetical protein NA 1Chr06:44662225–44665728 (-)3.967e-11
Glyma.07G021800 hypothetical protein AT1G80920:J8:Chaperone DnaJ-domain superfamily protein 1Chr07:1697119–1698666 (+)7.139e-12
Glyma.08G112600 hypothetical protein NA 1Chr08:8660670–8663379 (-)4.97e-18
Glyma.08G112700 hypothetical protein NA 1Chr08:8661027–8661191 (+)4.97e-18
Glyma.08G113900 hypothetical protein AT3G13560:AT3G13560:O-Glycosyl hydrolases family 17 protein 1Chr08:8730526–8734718 (-)3.051e-12
Glyma.08G114000 hypothetical protein AT5G46430:AT5G46430:Ribosomal protein L32e 1Chr08:8737686–8739958 (+)7.766e-11
Glyma.08G114200 hypothetical protein AT4G08810:SUB1:calcium ion binding protein 1Chr08:8743328–8745667 (-)1.996e-11
Glyma.08G114500 hypothetical protein AT4G38500:AT4G38500:Sept9 (DUF616) 1Chr08:8757033–8762145 (+)1.996e-11
Glyma.08G114600 hypothetical protein NA 1Chr08:8763388–8766206 (-)3.078e-12
Glyma.09G058900 hypothetical protein NA 1Chr09:5397968–5404650 (-)7.893e-14
Glyma.09G082000 hypothetical protein NA 1Chr09:9638564–9650178 (+)9.22e-11
Glyma.11G179000 hypothetical protein AT2G27230:LHW:transcription factor-like protein 1Chr11:24412040–24417199 (+)1.89e-12
Glyma.12G108600 hypothetical protein NA 1Chr12:9994609–9997302 (-)5.309e-12
Glyma.12G109500 hypothetical protein AT4G03415:PP2C52:Protein phosphatase 2C family protein 1Chr12:10308026–10314332 (-)5.309e-12
Glyma.12G114500 hypothetical protein AT4G22930:PYR4:pyrimidin 4 1Chr12:11396572–11400825 (-)1.366e-12
Glyma.12G114900 hypothetical protein NA 1Chr12:11457987–11462951 (-)1.366e-12
Glyma.12G183400 hypothetical protein NA 1Chr12:34427496–34440319 (-)9.897e-13
Glyma.12G198700 hypothetical protein AT5G62990:emb1692:Ubiquitin carboxyl-terminal hydrolase family protein 1Chr12:36001658–36004086 (+)5.574e-11
Glyma.12G202200 hypothetical protein AT2G20860:LIP1:lipoic acid synthase 1 1Chr12:36267599–36271584 (+)8.02e-11
Glyma.12G202300 hypothetical protein NA 1Chr12:36275438–36276838 (+)8.02e-11
Glyma.12G202400 hypothetical protein AT4G03415:PP2C52:Protein phosphatase 2C family protein 1Chr12:36289704–36295084 (-)4.85e-11
Glyma.12G203600 EXPB8 AT2G20750:EXPB1:expansin B1 1Chr12:36390283–36394245 (-)2.101e-11
Glyma.12G203700 hypothetical protein AT4G28260:AT4G28260:acyl-UDP-N-acetylglucosamine O-acyltransferase 1Chr12:36406747–36413696 (+)9.382e-11
Glyma.12G204000 hypothetical protein AT1G03687:AT1G03687:DTW domain-containing protein 1Chr12:36428558–36432835 (+)6.8e-12
Glyma.12G204400 hypothetical protein AT4G03560:TPC1:two-pore channel 1 1Chr12:36473422–36498915 (+)6.8e-12
Glyma.13G049100 hypothetical protein NA 1Chr13:14498952–14506408 (-)3.406e-13
Glyma.13G135500 hypothetical protein AT5G02780:GSTL1:glutathione transferase lambda 1 1Chr13:24798567–24801567 (+)5.488e-11
Glyma.13G135700 hypothetical protein NA 1Chr13:24812720–24818735 (+)5.488e-11
Glyma.13G135800 hypothetical protein AT5G02800:CDL1:Protein kinase superfamily protein 1Chr13:24820151–24823999 (-)5.489e-11
Glyma.14G069500 hypothetical protein AT5G37810:NIP4;1:NOD26-like intrinsic protein 4;1 1Chr14:5822246–5825628 (-)3.499e-13
Glyma.14G190300 hypothetical protein AT2G04240:XERICO:RING/U-box superfamily protein 1Chr14:45531920–45533895 (-)3.508e-11
Glyma.14G190400 hypothetical protein AT3G07650:COL9:CONSTANS-like 9 1Chr14:45536719–45544087 (-)3.508e-11
Glyma.16G118100 hypothetical protein AT2G17570:cPT1:Undecaprenyl pyrophosphate synthetase family protein 1Chr16:26324650–26336836 (+)3.712e-11
Glyma.16G119400 hypothetical protein NA 1Chr16:26684278–26687087 (+)1.031e-11
Glyma.16G121000 IQD20 AT3G51380:IQD20:IQ-domain 20 1Chr16:26909514–26910355 (+)1.884e-12
Glyma.16G121400 hypothetical protein NA 1Chr16:26989007–26992349 (+)4.951e-11
Glyma.16G189100 hypothetical protein AT1G05190:emb2394:Ribosomal protein L6 family 1Chr16:35170253–35173950 (-)3.981e-11
Glyma.17G257100 hypothetical protein AT1G75660:XRN3:5'-3' exoribonuclease 3 1Chr17:41113121–41125026 (+)9.933e-11
Glyma.17G258400 hypothetical protein AT1G30755:AT1G30755:elongation factor G, putative (DUF668) 1Chr17:41248979–41254225 (+)1.594e-11
Glyma.18G266400 hypothetical protein AT3G29390:RIK:RS2-interacting KH protein 1Chr18:55076548–55086297 (+)2.86e-11
Glyma.18G266500 hypothetical protein NA 1Chr18:55088284–55091427 (-)1.002e-14
Glyma.18G274100 hypothetical protein AT5G38880:AUG5:HAUS augmin-like complex subunit 1Chr18:55672621–55681964 (+)1.792e-11
Glyma.19G009400 hypothetical protein AT5G40270:AT5G40270:HD domain-containing metal-dependent phosphohydrolase family protein 1Chr19:885045–893253 (+)4.03e-11
Glyma.19G012100 hypothetical protein AT3G28150:TBL22:TRICHOME BIREFRINGENCE-LIKE 22 1Chr19:1155711–1161298 (-)1.19e-11
Glyma.19G012300 hypothetical protein NA 1Chr19:1165111–1173031 (-)1.19e-11
Glyma.19G119200 hypothetical protein AT3G03630:CS26:cysteine synthase 26 1Chr19:37677773–37683394 (+)9.311e-11
Glyma.20G019800 hypothetical protein AT1G49350:AT1G49350:pfkB-like carbohydrate kinase family protein 1Chr20:2051817–2057262 (+)9.438e-11
Glyma.20G107200 hypothetical protein AT4G38540:AT4G38540:FAD/NAD(P)-binding oxidoreductase family protein 1Chr20:34984922–34988496 (+)9.819e-11