Soybean mGWAS DBExplore The Genetic Basis Of Soybean Metabolism Glycine max
Overview Annotation GWAS Evidence Associated genes

P50295

Metabolite ID
P50295
Deionized mass
612.3906 Da
Average m/z
613.4050
Average RT
26.7653
Adduct
[M+H]+
Association scope
Overlapping genes only
Associated genes
45
GWAS result file
Available
Open in Soybean Metabolome Repository

Candidate annotations

Search compound candidates by deionized mass and tolerance. Follow compound IDs for database records, or use name searches to explore chemistry and soybean literature. About candidate annotations

GWAS Evidence

Dataset: indexed GWAS records.

Settings

SNP counts, plot highlights, gene associations and downloads use P < 10⁻¹⁰. Changing the threshold updates this page together.

Loading GWAS records…

Loading Manhattan plot…

This Q–Q plot describes the indexed records. For downsampled files, it does not represent the distribution across all tested variants. Data coverage

Loading Q–Q plot…
Loading GWAS summary…

Associated genes

45 genes linked to SNP records with P < 10⁻¹⁰ in the selected scope. Supporting SNP records are counted per feature–gene pair.

Gene ID Alias Description Arabidopsis ortholog Supporting SNP recordsGene interval (1-based)Minimum P
Glyma.16G209300 hypothetical protein NA 4Chr16:36856833–36863994 (-)5.188e-13
Glyma.06G305700 hypothetical protein AT2G05710:ACO3:aconitase 3 3Chr06:49451501–49461369 (-)1.584e-12
Glyma.16G145600 hypothetical protein AT1G11310:MLO2:Seven transmembrane MLO family protein__AT2G39200:MLO12:Seven transmembrane MLO family protein__AT1G6156… 3Chr16:30652378–30659548 (+)1.035e-11
Glyma.16G210200 hypothetical protein NA 3Chr16:36933402–36938940 (+)1.073e-11
Glyma.17G218600 hypothetical protein NA 3Chr17:36975400–36982812 (-)3.673e-15
Glyma.09G058900 hypothetical protein NA 2Chr09:5397968–5404650 (-)1.78e-12
Glyma.13G135700 hypothetical protein NA 2Chr13:24812720–24818735 (+)7.203e-12
Glyma.13G135800 hypothetical protein AT5G02800:CDL1:Protein kinase superfamily protein 2Chr13:24820151–24823999 (-)7.203e-12
Glyma.02G044600 hypothetical protein NA 1Chr02:4131829–4134877 (+)9.725e-12
Glyma.03G023000 hypothetical protein AT4G00220:JLO:Lateral organ boundaries (LOB) domain family protein 1Chr03:2423540–2428634 (-)1.109e-12
Glyma.05G124700 hypothetical protein NA 1Chr05:31807311–31817648 (+)7.775e-11
Glyma.05G137500 hypothetical protein NA 1Chr05:33012282–33015297 (-)1.588e-11
Glyma.05G137600 hypothetical protein NA 1Chr05:33018107–33020120 (-)4.503e-11
Glyma.05G224700 hypothetical protein NA 1Chr05:40351005–40361888 (+)1.962e-11
Glyma.05G226000 hypothetical protein AT5G19730:AT5G19730:Pectin lyase-like superfamily protein 1Chr05:40458098–40461736 (+)3.857e-11
Glyma.06G084800 hypothetical protein NA 1Chr06:6515571–6517480 (-)8.589e-11
Glyma.06G085000 hypothetical protein NA 1Chr06:6524339–6529016 (-)8.589e-11
Glyma.06G085100 hypothetical protein NA 1Chr06:6531956–6537295 (-)8.589e-11
Glyma.06G190300 hypothetical protein AT1G74730:AT1G74730:transmembrane protein, putative (DUF1118) 1Chr06:16709212–16710732 (-)6.381e-11
Glyma.06G261900 hypothetical protein NA 1Chr06:44875369–44879702 (-)2.377e-13
Glyma.06G305300 hypothetical protein NA 1Chr06:49431590–49435985 (-)1.584e-12
Glyma.06G305600 hypothetical protein NA 1Chr06:49446542–49450635 (-)1.584e-12
Glyma.08G016700 hypothetical protein AT1G63840:AT1G63840:RING/U-box superfamily protein 1Chr08:1330226–1331366 (-)9.875e-12
Glyma.08G150300 hypothetical protein NA 1Chr08:11550134–11555581 (+)2.5e-11
Glyma.09G039000 hypothetical protein NA 1Chr09:3270971–3276530 (-)4.264e-11
Glyma.12G202200 hypothetical protein AT2G20860:LIP1:lipoic acid synthase 1 1Chr12:36267599–36271584 (+)3.132e-12
Glyma.12G202300 hypothetical protein NA 1Chr12:36275438–36276838 (+)3.132e-12
Glyma.12G202400 hypothetical protein AT4G03415:PP2C52:Protein phosphatase 2C family protein 1Chr12:36289704–36295084 (-)3.27e-11
Glyma.13G135300 hypothetical protein NA 1Chr13:24770681–24773826 (+)4.524e-11
Glyma.13G135400 hypothetical protein AT5G12130:PDE149:integral membrane TerC family protein 1Chr13:24786242–24791938 (+)4.523e-11
Glyma.13G135500 hypothetical protein AT5G02780:GSTL1:glutathione transferase lambda 1 1Chr13:24798567–24801567 (+)7.203e-12
Glyma.13G162300 hypothetical protein NA 1Chr13:27773991–27778719 (-)4.555e-11
Glyma.13G201600 hypothetical protein NA 1Chr13:31521512–31522992 (+)3.205e-11
Glyma.14G194100 hypothetical protein AT5G58620:AT5G58620:zinc finger (CCCH-type) family protein 1Chr14:45920719–45923885 (+)8.93e-12
Glyma.16G139500 hypothetical protein AT5G66550:AT5G66550:Maf-like protein 1Chr16:29686243–29690410 (-)6.101e-11
Glyma.16G207900 hypothetical protein AT5G08450:AT5G08450:zinc finger CCCH domain protein 1Chr16:36754888–36763450 (+)2.934e-11
Glyma.16G208500 EIF6 AT3G55620:eIF6A:Translation initiation factor IF6 1Chr16:36806718–36809299 (+)1.722e-12
Glyma.16G209900 hypothetical protein NA 1Chr16:36919141–36924601 (+)1.073e-11
Glyma.16G210300 hypothetical protein AT1G73340:AT1G73340:Cytochrome P450 superfamily protein 1Chr16:36943073–36948828 (+)1.887e-13
Glyma.16G210400 hypothetical protein AT1G73350:AT1G73350:ankyrin repeat protein 1Chr16:36949685–36953467 (+)1.887e-13
Glyma.17G092800 hypothetical protein NA 1Chr17:7253511–7255621 (-)4.603e-11
Glyma.17G218700 hypothetical protein NA 1Chr17:36986191–36991558 (-)3.673e-15
Glyma.18G251900 hypothetical protein AT3G60320:AT3G60320:bZIP domain class transcription factor (DUF630 and DUF632)__AT1G02110:AT1G02110:bZIP domain class t… 1Chr18:53855786–53862322 (-)1.503e-12
Glyma.19G150000 hypothetical protein AT3G58060:AT3G58060:Cation efflux family protein 1Chr19:41018746–41025024 (+)3.962e-11
Glyma.20G099200 hypothetical protein AT3G55410:AT3G55410:2-oxoglutarate dehydrogenase, E1 component__AT5G65750:AT5G65750:2-oxoglutarate dehydrogenase, E1 co… 1Chr20:34242852–34248956 (-)7.608e-11