Soybean mGWAS DBExplore The Genetic Basis Of Soybean Metabolism Glycine max
Overview Annotation GWAS Evidence Associated genes

P50255

Metabolite ID
P50255
Deionized mass
732.4084 Da
Average m/z
733.4165
Average RT
26.7417
Adduct
[M+H]+
Association scope
Overlapping genes only
Associated genes
45
GWAS result file
Available
Open in Soybean Metabolome Repository

Candidate annotations

Search compound candidates by deionized mass and tolerance. Follow compound IDs for database records, or use name searches to explore chemistry and soybean literature. About candidate annotations

GWAS Evidence

Dataset: indexed GWAS records.

Settings

SNP counts, plot highlights, gene associations and downloads use P < 10⁻¹⁰. Changing the threshold updates this page together.

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Associated genes

45 genes linked to SNP records with P < 10⁻¹⁰ in the selected scope. Supporting SNP records are counted per feature–gene pair.

Gene ID Alias Description Arabidopsis ortholog Supporting SNP recordsGene interval (1-based)Minimum P
Glyma.16G196800 hypothetical protein AT5G07250:RBL3:RHOMBOID-like protein 3 4Chr16:35831912–35835153 (+)8.008e-14
Glyma.16G196900 hypothetical protein NA 4Chr16:35841279–35846894 (-)1.181e-15
Glyma.16G189100 hypothetical protein AT1G05190:emb2394:Ribosomal protein L6 family 3Chr16:35170253–35173950 (-)5.915e-18
Glyma.08G123500 hypothetical protein NA 2Chr08:9494946–9505931 (-)3.555e-11
Glyma.14G093100 hypothetical protein NA 2Chr14:8654730–8655892 (-)3.116e-15
Glyma.01G169700 hypothetical protein AT4G36410:UBC17:ubiquitin-conjugating enzyme 17 1Chr01:50715084–50719427 (-)5.204e-17
Glyma.01G169800 hypothetical protein AT4G36400:D2HGDH:FAD-linked oxidases family protein 1Chr01:50726088–50733347 (-)5.204e-17
Glyma.03G023000 hypothetical protein AT4G00220:JLO:Lateral organ boundaries (LOB) domain family protein 1Chr03:2423540–2428634 (-)1.709e-12
Glyma.05G127500 hypothetical protein NA 1Chr05:32041345–32049554 (+)1.288e-11
Glyma.05G127800 hypothetical protein AT4G18240:SS4:starch synthase 4 1Chr05:32125404–32138244 (+)2.659e-11
Glyma.05G127900 SAD1 AT5G48870:SAD1:Small nuclear ribonucleoprotein family protein 1Chr05:32139620–32141770 (-)2.659e-11
Glyma.05G128200 hypothetical protein AT5G46330:FLS2:Leucine-rich receptor-like protein kinase family protein 1Chr05:32158034–32162343 (-)2.659e-11
Glyma.05G130600 hypothetical protein AT1G30040:GA2OX2:gibberellin 2-oxidase 1Chr05:32352085–32354865 (+)5.843e-11
Glyma.05G130700 hypothetical protein AT2G34560:CCP1:P-loop containing nucleoside triphosphate hydrolases superfamily protein 1Chr05:32376592–32384905 (+)8.667e-11
Glyma.05G131200 hypothetical protein AT5G58230:MSI1:Transducin/WD40 repeat-like superfamily protein 1Chr05:32421116–32425198 (-)2.519e-12
Glyma.05G236700 hypothetical protein AT4G33760:AT4G33760:tRNA synthetase class II (D, K and N) family protein 1Chr05:41301540–41310727 (+)9.077e-15
Glyma.06G112300 hypothetical protein AT1G44780:AT1G44780:translation initiation factor__AT4G08310:AT4G08310:DNA ligase 1Chr06:9113982–9118848 (-)4.643e-11
Glyma.06G112600 hypothetical protein AT1G77620:AT1G77620:P-loop containing nucleoside triphosphate hydrolases superfamily protein 1Chr06:9134358–9144986 (+)4.643e-11
Glyma.06G112700 hypothetical protein AT1G44760:AT1G44760:Adenine nucleotide alpha hydrolases-like superfamily protein 1Chr06:9156973–9158659 (+)4.642e-11
Glyma.08G112600 hypothetical protein NA 1Chr08:8660670–8663379 (-)5.672e-11
Glyma.08G112700 hypothetical protein NA 1Chr08:8661027–8661191 (+)5.672e-11
Glyma.08G122200 hypothetical protein NA 1Chr08:9416766–9429995 (-)3.555e-11
Glyma.08G122300 hypothetical protein AT1G29390:COR314-TM2:cold regulated 314 thylakoid membrane 2 1Chr08:9435391–9437279 (+)3.555e-11
Glyma.08G122500 hypothetical protein NA 1Chr08:9441329–9445315 (-)3.555e-11
Glyma.08G122700 hypothetical protein AT1G29350:AT1G29350:RNA polymerase II degradation factor-like protein (DUF1296) 1Chr08:9452604–9458932 (+)3.555e-11
Glyma.09G053800 hypothetical protein NA 1Chr09:4737413–4755632 (-)1.082e-11
Glyma.09G060300 hypothetical protein AT5G57140:PAP28:purple acid phosphatase 28 1Chr09:5609003–5612943 (+)9.185e-13
Glyma.10G229600 hypothetical protein AT4G23630:BTI1:VIRB2-interacting protein 1 1Chr10:45968793–45973482 (-)3.096e-11
Glyma.10G238200 hypothetical protein AT5G07250:RBL3:RHOMBOID-like protein 3 1Chr10:46680865–46684088 (+)1.25e-12
Glyma.10G265400 hypothetical protein AT2G01290:RPI2: 1Chr10:48921268–48922795 (+)3.801e-12
Glyma.12G108600 hypothetical protein NA 1Chr12:9994609–9997302 (-)2.942e-11
Glyma.12G109500 hypothetical protein AT4G03415:PP2C52:Protein phosphatase 2C family protein 1Chr12:10308026–10314332 (-)2.942e-11
Glyma.12G114500 hypothetical protein AT4G22930:PYR4:pyrimidin 4 1Chr12:11396572–11400825 (-)1.403e-11
Glyma.12G114900 hypothetical protein NA 1Chr12:11457987–11462951 (-)1.403e-11
Glyma.12G202400 hypothetical protein AT4G03415:PP2C52:Protein phosphatase 2C family protein 1Chr12:36289704–36295084 (-)3.482e-11
Glyma.14G069500 hypothetical protein AT5G37810:NIP4;1:NOD26-like intrinsic protein 4;1 1Chr14:5822246–5825628 (-)6.95e-11
Glyma.14G201600 hypothetical protein NA 1Chr14:46703283–46706500 (+)1.644e-11
Glyma.14G201700 hypothetical protein NA 1Chr14:46711634–46715644 (-)1.644e-11
Glyma.16G182600 hypothetical protein AT5G52400:CYP715A1:cytochrome P450, family 715, subfamily A, polypeptide 1 1Chr16:34364037–34367765 (-)4.424e-16
Glyma.16G189500 hypothetical protein NA 1Chr16:35202920–35206459 (-)2.741e-11
Glyma.16G196200 HSF-32 heat stress transcription factor 32 AT5G62020:HSFB2A:heat shock transcription factor B2A 1Chr16:35760178–35761852 (+)5.957e-13
Glyma.16G196400 hypothetical protein AT5G07270:XBAT33:uncharacterized protein 1Chr16:35782198–35790495 (-)2.423e-13
Glyma.16G197200 hypothetical protein NA 1Chr16:35854742–35861472 (-)3.601e-11
Glyma.16G209300 hypothetical protein NA 1Chr16:36856833–36863994 (-)2.351e-11
Glyma.18G299100 hypothetical protein AT5G13420:TRA2:Aldolase-type TIM barrel family protein 1Chr18:57674222–57678396 (+)2.564e-12