Soybean mGWAS DBExplore The Genetic Basis Of Soybean Metabolism Glycine max
Overview Annotation GWAS Evidence Associated genes

P50228

Metabolite ID
P50228
Deionized mass
658.4722 Da
Average m/z
659.4824
Average RT
26.7339
Adduct
[M+H]+
Association scope
Overlapping genes only
Associated genes
75
GWAS result file
Available
Open in Soybean Metabolome Repository

Candidate annotations

Search compound candidates by deionized mass and tolerance. Follow compound IDs for database records, or use name searches to explore chemistry and soybean literature. About candidate annotations

GWAS Evidence

Dataset: indexed GWAS records.

Settings

SNP counts, plot highlights, gene associations and downloads use P < 10⁻¹⁰. Changing the threshold updates this page together.

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Associated genes

75 genes linked to SNP records with P < 10⁻¹⁰ in the selected scope. Supporting SNP records are counted per feature–gene pair.

Gene ID Alias Description Arabidopsis ortholog Supporting SNP recordsGene interval (1-based)Minimum P
Glyma.03G251100 hypothetical protein AT3G04490:AT3G04490:exportin-4 protein 2Chr03:44673965–44702804 (-)2.24e-11
Glyma.07G243600 hypothetical protein NA 2Chr07:42336266–42345196 (+)8.269e-12
Glyma.08G303400 hypothetical protein NA 2Chr08:42139097–42147365 (+)5.898e-13
Glyma.14G149300 hypothetical protein NA 2Chr14:32235308–32258014 (+)7.706e-11
Glyma.16G072000 hypothetical protein AT1G52800:AT1G52800:2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein 2Chr16:7255773–7261809 (+)3.808e-11
Glyma.01G021600 hypothetical protein AT5G65540:AT5G65540:transcription initiation factor TFIID subunit 1Chr01:2189923–2194362 (-)8.873e-11
Glyma.03G023000 hypothetical protein AT4G00220:JLO:Lateral organ boundaries (LOB) domain family protein 1Chr03:2423540–2428634 (-)7.333e-15
Glyma.03G042500 hypothetical protein NA 1Chr03:5367447–5370281 (+)1.015e-11
Glyma.03G135600 hypothetical protein NA 1Chr03:35109981–35110632 (-)5.261e-12
Glyma.03G177700 hypothetical protein NA 1Chr03:39046772–39051158 (+)3.892e-11
Glyma.03G250400 hypothetical protein AT3G04470:AT3G04470:Ankyrin repeat family protein 1Chr03:44616824–44621636 (-)9.091e-11
Glyma.05G182500 hypothetical protein AT5G65210:TGA1:bZIP transcription factor family protein 1Chr05:37029299–37037313 (+)2.96e-11
Glyma.05G219200 hypothetical protein NA 1Chr05:39875137–39879113 (-)4.555e-11
Glyma.05G236400 hypothetical protein AT1G23210:GH9B6:glycosyl hydrolase 9B6__AT1G70710:GH9B1:glycosyl hydrolase 9B1 1Chr05:41274513–41279615 (-)2.333e-13
Glyma.05G236700 hypothetical protein AT4G33760:AT4G33760:tRNA synthetase class II (D, K and N) family protein 1Chr05:41301540–41310727 (+)1.591e-14
Glyma.05G237800 hypothetical protein AT1G48790:AMSH1:associated molecule with the SH3 domain of STAM 1 1Chr05:41406807–41413022 (-)9.526e-12
Glyma.06G097300 hypothetical protein AT4G24510:CER2:HXXXD-type acyl-transferase family protein 1Chr06:7685576–7689497 (-)8.818e-11
Glyma.07G019900 hypothetical protein AT1G79870:AT1G79870:D-isomer specific 2-hydroxyacid dehydrogenase family protein 1Chr07:1561952–1564494 (+)3.181e-12
Glyma.07G242700 hypothetical protein NA 1Chr07:42245320–42251504 (-)8.269e-12
Glyma.07G243800 hypothetical protein NA 1Chr07:42339489–42341742 (-)8.269e-12
Glyma.07G244300 hypothetical protein AT3G16810:PUM24:pumilio 24 1Chr07:42386941–42393489 (+)8.269e-12
Glyma.07G244500 hypothetical protein AT4G16070:AT4G16070:lipase class 3 family protein 1Chr07:42405215–42407262 (+)8.269e-12
Glyma.07G244700 hypothetical protein NA 1Chr07:42413071–42416331 (-)8.269e-12
Glyma.07G245200 hypothetical protein NA 1Chr07:42448391–42448648 (-)8.269e-12
Glyma.07G245500 hypothetical protein NA 1Chr07:42462950–42472062 (+)8.269e-12
Glyma.07G245600 hypothetical protein NA 1Chr07:42463861–42466282 (-)8.269e-12
Glyma.07G245900 hypothetical protein AT4G15940:AT4G15940:Fumarylacetoacetate (FAA) hydrolase family 1Chr07:42479727–42483842 (-)8.269e-12
Glyma.08G202000 hypothetical protein AT1G52150:ATHB-15:Homeobox-leucine zipper family protein / lipid-binding START domain-containing protein 1Chr08:16375907–16384294 (-)3.945e-13
Glyma.09G082000 hypothetical protein NA 1Chr09:9638564–9650178 (+)2.013e-11
Glyma.10G263800 hypothetical protein AT1G23010:LPR1:Cupredoxin superfamily protein 1Chr10:48805999–48811533 (-)1.323e-11
Glyma.11G015300 hypothetical protein AT3G60500:CER7:3'-5'-exoribonuclease family protein 1Chr11:1048122–1055388 (+)1.491e-11
Glyma.11G048300 hypothetical protein AT4G37640:ACA2:calcium ATPase 2 1Chr11:3601241–3607177 (+)1.74e-11
Glyma.11G049700 hypothetical protein NA 1Chr11:3731308–3734534 (+)2.72e-14
Glyma.11G050300 hypothetical protein AT2G23093:AT2G23093:Major facilitator superfamily protein 1Chr11:3765453–3771565 (+)1.584e-14
Glyma.11G050500 hypothetical protein AT5G67370:CGLD27:DUF1230 family protein (DUF1230) 1Chr11:3778152–3782174 (+)1.584e-14
Glyma.11G050600 hypothetical protein NA 1Chr11:3779988–3786583 (-)1.584e-14
Glyma.11G051600 hypothetical protein NA 1Chr11:3857225–3859564 (-)1.584e-14
Glyma.11G058500 hypothetical protein AT4G37190:AT4G37190:plasma membrane, autoregulation-binding site, misato segment II, myosin-like, tubulin/FtsZ protein 1Chr11:4417029–4423791 (-)7.622e-11
Glyma.11G090300 hypothetical protein AT4G19190:AT4G19190:zinc knuckle (CCHC-type) family protein 1Chr11:6849007–6855564 (+)5.67e-11
Glyma.11G179000 hypothetical protein AT2G27230:LHW:transcription factor-like protein 1Chr11:24412040–24417199 (+)1.992e-12
Glyma.11G182600 hypothetical protein AT5G22400:AT5G22400:Rho GTPase activating protein with PAK-box/P21-Rho-binding domain-containing protein 1Chr11:24998933–25003549 (-)1.263e-12
Glyma.11G182700 hypothetical protein AT1G32250:AT1G32250:Calcium-binding EF-hand family protein 1Chr11:25028353–25031056 (-)5.806e-12
Glyma.11G182800 hypothetical protein AT2G27460:AT2G27460:sec23/sec24 transport family protein 1Chr11:25044939–25052549 (+)5.46e-11
Glyma.12G108600 hypothetical protein NA 1Chr12:9994609–9997302 (-)8.649e-12
Glyma.12G109500 hypothetical protein AT4G03415:PP2C52:Protein phosphatase 2C family protein 1Chr12:10308026–10314332 (-)8.649e-12
Glyma.12G114500 hypothetical protein AT4G22930:PYR4:pyrimidin 4 1Chr12:11396572–11400825 (-)1.181e-11
Glyma.12G114900 hypothetical protein NA 1Chr12:11457987–11462951 (-)1.181e-11
Glyma.12G198700 hypothetical protein AT5G62990:emb1692:Ubiquitin carboxyl-terminal hydrolase family protein 1Chr12:36001658–36004086 (+)4.672e-12
Glyma.12G202200 hypothetical protein AT2G20860:LIP1:lipoic acid synthase 1 1Chr12:36267599–36271584 (+)1.825e-11
Glyma.12G202300 hypothetical protein NA 1Chr12:36275438–36276838 (+)1.825e-11
Glyma.12G202400 hypothetical protein AT4G03415:PP2C52:Protein phosphatase 2C family protein 1Chr12:36289704–36295084 (-)4.793e-11
Glyma.12G203600 EXPB8 AT2G20750:EXPB1:expansin B1 1Chr12:36390283–36394245 (-)2.872e-11
Glyma.12G203700 hypothetical protein AT4G28260:AT4G28260:acyl-UDP-N-acetylglucosamine O-acyltransferase 1Chr12:36406747–36413696 (+)3.824e-11
Glyma.12G204000 hypothetical protein AT1G03687:AT1G03687:DTW domain-containing protein 1Chr12:36428558–36432835 (+)1.083e-11
Glyma.12G204400 hypothetical protein AT4G03560:TPC1:two-pore channel 1 1Chr12:36473422–36498915 (+)1.083e-11
Glyma.13G203300 hypothetical protein AT3G63530:BB:RING/U-box superfamily protein 1Chr13:31727841–31735910 (-)6.772e-11
Glyma.14G069500 hypothetical protein AT5G37810:NIP4;1:NOD26-like intrinsic protein 4;1 1Chr14:5822246–5825628 (-)1.015e-11
Glyma.14G094900 hypothetical protein AT1G60960:IRT3:iron regulated transporter 3 1Chr14:8824846–8827258 (-)1.834e-11
Glyma.14G148800 hypothetical protein AT1G44760:AT1G44760:Adenine nucleotide alpha hydrolases-like superfamily protein 1Chr14:32154755–32157298 (+)7.706e-11
Glyma.14G213400 hypothetical protein NA 1Chr14:47844823–47847028 (+)6.981e-11
Glyma.15G035600 hypothetical protein AT3G46740:TOC75-III:translocon at the outer envelope membrane of chloroplasts 75-III 1Chr15:2830678–2835534 (+)2.186e-13
Glyma.15G037400 hypothetical protein AT5G59420:ORP3C:OSBP(oxysterol binding protein)-related protein 3C 1Chr15:2950291–2955686 (-)1.27e-11
Glyma.15G037600 hypothetical protein AT2G29050:RBL1:RHOMBOID-like 1 1Chr15:2964304–2967785 (+)8.609e-12
Glyma.15G124500 MLO-like protein 13 AT4G24250:MLO13:Seven transmembrane MLO family protein 1Chr15:9888761–9894068 (-)2.496e-11
Glyma.15G256300 hypothetical protein NA 1Chr15:48546007–48547401 (-)8.015e-16
Glyma.15G257100 hypothetical protein AT1G56070:LOS1:Ribosomal protein S5/Elongation factor G/III/V family protein 1Chr15:48661607–48665946 (-)3.262e-11
Glyma.16G062500 hypothetical protein NA 1Chr16:6099546–6105267 (-)3.534e-11
Glyma.16G066000 hypothetical protein AT5G40660:AT5G40660:ATP12 protein-like protein 1Chr16:6570689–6574950 (+)5.131e-12
Glyma.16G069300 hypothetical protein AT3G01600:NAC044:NAC domain containing protein 44 1Chr16:6914905–6920531 (+)2.073e-11
Glyma.16G209300 hypothetical protein NA 1Chr16:36856833–36863994 (-)9.797e-11
Glyma.18G266500 hypothetical protein NA 1Chr18:55088284–55091427 (-)4.22e-11
Glyma.19G012100 hypothetical protein AT3G28150:TBL22:TRICHOME BIREFRINGENCE-LIKE 22 1Chr19:1155711–1161298 (-)9.811e-11
Glyma.19G012300 hypothetical protein NA 1Chr19:1165111–1173031 (-)9.811e-11
Glyma.19G128200 hypothetical protein NA 1Chr19:38739769–38743404 (+)1.374e-12
Glyma.19G218100 hypothetical protein AT1G02390:GPAT2:glycerol-3-phosphate acyltransferase 2 1Chr19:47082133–47085750 (+)3.721e-14